RNA–Protein interactions for RNA: ENST00000518931.1

SQLE-203, Transcript of squalene epoxidase, humanhuman

TSL 4

Gene SQLE, Length 554 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQLE-203ENST00000518931 LRRK2Q5S007 2527 aa2.06□□□□□ -2.08
SQLE-203ENST00000518931 RELNP78509 3460 aa2.04□□□□□ -2.08
SQLE-203ENST00000518931 HIVEP3Q5T1R4 2406 aa2.04□□□□□ -2.08
SQLE-203ENST00000518931 CSMD1Q96PZ7 3565 aa2.04□□□□□ -2.08
SQLE-203ENST00000518931 DMXL2Q8TDJ6 3036 aa2.04□□□□□ -2.08
SQLE-203ENST00000518931 CELSR3Q9NYQ7 3312 aa2.03□□□□□ -2.08
SQLE-203ENST00000518931 ANKHD1Q8IWZ3 2542 aaKnown RBP2.03□□□□□ -2.08
SQLE-203ENST00000518931 CCDC168Q8NDH2 2452 aa2.03□□□□□ -2.08
SQLE-203ENST00000518931 FREM2Q5SZK8 3169 aa2.02□□□□□ -2.09
SQLE-203ENST00000518931 DNAH1Q9P2D7 4330 aa2.02□□□□□ -2.09
SQLE-203ENST00000518931 NBEAL1Q6ZS30 2694 aa2.02□□□□□ -2.09
SQLE-203ENST00000518931 NOTCH1P46531 2555 aa2.02□□□□□ -2.09
SQLE-203ENST00000518931 SPENQ96T58 3664 aaKnown RBP2.01□□□□□ -2.09
SQLE-203ENST00000518931 NF1P21359 2839 aa2.01□□□□□ -2.09
SQLE-203ENST00000518931 ATRQ13535 2644 aa2.01□□□□□ -2.09
SQLE-203ENST00000518931 FRAS1Q86XX4 4008 aa2.01□□□□□ -2.09
SQLE-203ENST00000518931 SRRM2Q9UQ35 2752 aaKnown RBP2□□□□□ -2.09
SQLE-203ENST00000518931 LAMA1P25391 3075 aa2□□□□□ -2.09
SQLE-203ENST00000518931 WDFY3Q8IZQ1 3526 aa2□□□□□ -2.09
SQLE-203ENST00000518931 STAB1Q9NY15 2570 aa1.99□□□□□ -2.09
SQLE-203ENST00000518931 TNP1P09430 55 aa1.99□□□□□ -2.09
SQLE-203ENST00000518931 MEGF8Q7Z7M0 2845 aa1.99□□□□□ -2.09
SQLE-203ENST00000518931 LAMA5O15230 3695 aa1.98□□□□□ -2.09
SQLE-203ENST00000518931 ATMQ13315 3056 aa1.98□□□□□ -2.09
SQLE-203ENST00000518931 FLNCQ14315 2725 aa1.97□□□□□ -2.09
SQLE-203ENST00000518931 SMR3AQ99954 134 aa1.97□□□□□ -2.09
SQLE-203ENST00000518931 DNAH8Q96JB1 4490 aa1.97□□□□□ -2.09
SQLE-203ENST00000518931 DMBT1Q9UGM3 2413 aaPredicted RBP1.96□□□□□ -2.1
SQLE-203ENST00000518931 KRTAP10-4P60372 401 aaPredicted RBP1.96□□□□□ -2.1
SQLE-203ENST00000518931 TACC2O95359 2948 aa1.96□□□□□ -2.1
SQLE-203ENST00000518931 FLNAP21333 2647 aaKnown RBP1.95□□□□□ -2.1
SQLE-203ENST00000518931 USP9YO00507 2555 aaPredicted RBP1.95□□□□□ -2.1
SQLE-203ENST00000518931 SONP18583 2426 aaKnown RBP1.93□□□□□ -2.1
SQLE-203ENST00000518931 APCP25054 2843 aa1.92□□□□□ -2.1
SQLE-203ENST00000518931 NBEAL2Q6ZNJ1 2754 aa1.92□□□□□ -2.1
SQLE-203ENST00000518931 ITPR2Q14571 2701 aa1.92□□□□□ -2.1
SQLE-203ENST00000518931 DCHS2Q6V1P9 2916 aa1.92□□□□□ -2.1
SQLE-203ENST00000518931 ANK3Q12955 4377 aaKnown RBP1.91□□□□□ -2.1
SQLE-203ENST00000518931 PKD1L1Q8TDX9 2849 aa1.9□□□□□ -2.1
SQLE-203ENST00000518931 ADGRG4Q8IZF6 3080 aa1.9□□□□□ -2.1
SQLE-203ENST00000518931 DNAH2Q9P225 4427 aa1.9□□□□□ -2.11
SQLE-203ENST00000518931 C9orf92A6NGG3 77 aa1.9□□□□□ -2.11
SQLE-203ENST00000518931 BIRC6Q9NR09 4857 aa1.89□□□□□ -2.11
SQLE-203ENST00000518931 PCLOQ9Y6V0 5065 aa1.89□□□□□ -2.11
SQLE-203ENST00000518931 HIVEP1P15822 2718 aa1.89□□□□□ -2.11
SQLE-203ENST00000518931 COL7A1Q02388 2944 aa1.89□□□□□ -2.11
SQLE-203ENST00000518931 BSNQ9UPA5 3926 aa1.88□□□□□ -2.11
SQLE-203ENST00000518931 DYNC2H1Q8NCM8 4307 aaKnown RBP1.88□□□□□ -2.11
SQLE-203ENST00000518931 DNAH17Q9UFH2 4485 aa1.88□□□□□ -2.11
SQLE-203ENST00000518931 TRRAPQ9Y4A5 3859 aa1.88□□□□□ -2.11
SQLE-203ENST00000518931 SACSQ9NZJ4 4579 aa1.88□□□□□ -2.11
SQLE-203ENST00000518931 TLN2Q9Y4G6 2542 aa1.88□□□□□ -2.11
SQLE-203ENST00000518931 PDZD2O15018 2839 aa1.88□□□□□ -2.11
SQLE-203ENST00000518931 DNAH10Q8IVF4 4471 aa1.87□□□□□ -2.11
SQLE-203ENST00000518931 NIPBLQ6KC79 2804 aaeCLIP1.87□□□□□ -2.11
SQLE-203ENST00000518931 RYR3Q15413 4870 aa1.87□□□□□ -2.11
SQLE-203ENST00000518931 DNAH9Q9NYC9 4486 aa1.87□□□□□ -2.11
SQLE-203ENST00000518931 CMYA5Q8N3K9 4069 aa1.86□□□□□ -2.11
SQLE-203ENST00000518931 HUWE1Q7Z6Z7 4374 aaKnown RBP1.85□□□□□ -2.11
SQLE-203ENST00000518931 CRCT1Q9UGL9 99 aa1.85□□□□□ -2.11
SQLE-203ENST00000518931 ANK2Q01484 3957 aa1.84□□□□□ -2.11
SQLE-203ENST00000518931 CENPEQ02224 2701 aa1.84□□□□□ -2.12
SQLE-203ENST00000518931 TGP01266 2768 aa1.84□□□□□ -2.12
SQLE-203ENST00000518931 CSMD2Q7Z408 3487 aa1.83□□□□□ -2.12
SQLE-203ENST00000518931 UBR4Q5T4S7 5183 aa1.83□□□□□ -2.12
SQLE-203ENST00000518931 DNAH3Q8TD57 4116 aa1.82□□□□□ -2.12
SQLE-203ENST00000518931 CSMD3Q7Z407 3707 aa1.82□□□□□ -2.12
SQLE-203ENST00000518931 KMT2CQ8NEZ4 4911 aaKnown RBP1.82□□□□□ -2.12
SQLE-203ENST00000518931 HRNRQ86YZ3 2850 aaPredicted RBP1.82□□□□□ -2.12
SQLE-203ENST00000518931 DNAH6Q9C0G6 4158 aa1.82□□□□□ -2.12
SQLE-203ENST00000518931 LYSTQ99698 3801 aa1.81□□□□□ -2.12
SQLE-203ENST00000518931 PRKDCP78527 4128 aaKnown RBP1.81□□□□□ -2.12
SQLE-203ENST00000518931 RYR1P21817 5038 aa1.81□□□□□ -2.12
SQLE-203ENST00000518931 APOBP04114 4563 aaKnown RBP1.8□□□□□ -2.12
SQLE-203ENST00000518931 ACANP16112 2415 aa1.8□□□□□ -2.12
SQLE-203ENST00000518931 UTP20O75691 2785 aaKnown RBP1.8□□□□□ -2.12
SQLE-203ENST00000518931 MGAM2Q2M2H8 2515 aa1.79□□□□□ -2.12
SQLE-203ENST00000518931 KRTAP8-1Q8IUC2 63 aa1.79□□□□□ -2.12
SQLE-203ENST00000518931 KRTAP2-3P0C7H8 128 aa1.78□□□□□ -2.12
SQLE-203ENST00000518931 KRTAP2-4Q9BYR9 128 aa1.78□□□□□ -2.12
SQLE-203ENST00000518931 KRTAP2-1Q9BYU5 128 aa1.78□□□□□ -2.12
SQLE-203ENST00000518931 TENM1Q9UKZ4 2725 aa1.78□□□□□ -2.12
SQLE-203ENST00000518931 PKD1P98161 4303 aa1.77□□□□□ -2.13
SQLE-203ENST00000518931 HYDINQ4G0P3 5121 aa1.76□□□□□ -2.13
SQLE-203ENST00000518931 NSD1Q96L73 2696 aaPredicted RBP1.76□□□□□ -2.13
SQLE-203ENST00000518931 EPPK1P58107 5090 aaKnown RBP1.76□□□□□ -2.13
SQLE-203ENST00000518931 DNAH7Q8WXX0 4024 aa1.75□□□□□ -2.13
SQLE-203ENST00000518931 CUBNO60494 3623 aa1.75□□□□□ -2.13
SQLE-203ENST00000518931 KMT2AQ03164 3969 aa1.75□□□□□ -2.13
SQLE-203ENST00000518931 FAT3Q8TDW7 4589 aa1.74□□□□□ -2.13
SQLE-203ENST00000518931 VPS13CQ709C8 3753 aa1.73□□□□□ -2.13
SQLE-203ENST00000518931 KRTAP4-1Q9BYQ7 146 aa1.73□□□□□ -2.13
SQLE-203ENST00000518931 STAB2Q8WWQ8 2551 aa1.73□□□□□ -2.13
SQLE-203ENST00000518931 KIAA1109Q2LD37 5005 aa1.73□□□□□ -2.13
SQLE-203ENST00000518931 HERC2O95714 4834 aa1.73□□□□□ -2.13
SQLE-203ENST00000518931 HSPG2P98160 4391 aa1.72□□□□□ -2.13
SQLE-203ENST00000518931 M0R2T5 61 aa1.72□□□□□ -2.13
SQLE-203ENST00000518931 HECTD4Q9Y4D8 3996 aa1.72□□□□□ -2.13
SQLE-203ENST00000518931 VPS13BQ7Z7G8 4022 aa1.71□□□□□ -2.14
SQLE-203ENST00000518931 MXRA5Q9NR99 2828 aa1.71□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms