RNA–Protein interactions for RNA: ENST00000518931.1

SQLE-203, Transcript of squalene epoxidase, humanhuman

TSL 4

Gene SQLE, Length 554 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQLE-203ENST00000518931 AEBP2Q6ZN18 517 aaPredicted RBP27.94■■■□□ 2.06
SQLE-203ENST00000518931 CHIC1Q5VXU3 224 aa27.37■■□□□ 1.97
SQLE-203ENST00000518931 PHF23Q9BUL5 403 aaPredicted RBP24.11■■□□□ 1.45
SQLE-203ENST00000518931 SENP3Q9H4L4 574 aaPredicted RBP23.67■■□□□ 1.38
SQLE-203ENST00000518931 PLPPR3Q6T4P5 718 aa22.27■■□□□ 1.16
SQLE-203ENST00000518931 FOXD1Q16676 465 aa21.99■■□□□ 1.11
SQLE-203ENST00000518931 PPP6R1Q9UPN7 881 aa21.26■□□□□ 0.99
SQLE-203ENST00000518931 ADRA2BP18089 450 aa21.25■□□□□ 0.99
SQLE-203ENST00000518931 PIAS4Q8N2W9 510 aaPredicted RBP20.76■□□□□ 0.91
SQLE-203ENST00000518931 MSH5O43196 834 aa20.2■□□□□ 0.82
SQLE-203ENST00000518931 PPP4R3CPQ6ZMV5 832 aa19.66■□□□□ 0.74
SQLE-203ENST00000518931 SCAF1Q9H7N4 1312 aaKnown RBP19.42■□□□□ 0.7
SQLE-203ENST00000518931 KCNA4P22459 653 aa19.31■□□□□ 0.68
SQLE-203ENST00000518931 MAPK8IP2Q13387 824 aaPredicted RBP19.27■□□□□ 0.68
SQLE-203ENST00000518931 NCBP3Q53F19 620 aaKnown RBP19.16■□□□□ 0.66
SQLE-203ENST00000518931 CNKSR2Q8WXI2 1034 aa19.07■□□□□ 0.64
SQLE-203ENST00000518931 DMRT2Q9Y5R5 561 aa18.91■□□□□ 0.62
SQLE-203ENST00000518931 NPM3O75607 178 aaKnown RBP18.87■□□□□ 0.61
SQLE-203ENST00000518931 RNF216Q9NWF9 866 aaPredicted RBP18.66■□□□□ 0.58
SQLE-203ENST00000518931 HOXD11P31277 338 aaPredicted RBP18.56■□□□□ 0.56
SQLE-203ENST00000518931 SLC4A1APQ9BWU0 796 aaKnown RBP18.41■□□□□ 0.54
SQLE-203ENST00000518931 POTEDQ86YR6 584 aa18.3■□□□□ 0.52
SQLE-203ENST00000518931 DNAJC5BQ9UF47 199 aa18.24■□□□□ 0.51
SQLE-203ENST00000518931 DCAF8L1A6NGE4 600 aa18.16■□□□□ 0.5
SQLE-203ENST00000518931 EHMT2Q96KQ7 1210 aa18.01■□□□□ 0.47
SQLE-203ENST00000518931 SLC4A2P04920 1241 aa17.81■□□□□ 0.44
SQLE-203ENST00000518931 ZBTB22O15209 634 aa17.76■□□□□ 0.43
SQLE-203ENST00000518931 CSRNP3Q8WYN3 585 aa17.75■□□□□ 0.43
SQLE-203ENST00000518931 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.73■□□□□ 0.43
SQLE-203ENST00000518931 FOXD4L1Q9NU39 408 aa17.72■□□□□ 0.43
SQLE-203ENST00000518931 MYCNP04198 464 aaPredicted RBP17.42■□□□□ 0.38
SQLE-203ENST00000518931 U3KPZ7 1027 aaPredicted RBP17.42■□□□□ 0.38
SQLE-203ENST00000518931 RNF39Q9H2S5 420 aa17.33■□□□□ 0.36
SQLE-203ENST00000518931 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.22■□□□□ 0.35
SQLE-203ENST00000518931 HNRNPUL2Q1KMD3 747 aaKnown RBP17.22■□□□□ 0.35
SQLE-203ENST00000518931 SAMD1Q6SPF0 538 aaPredicted RBP17.17■□□□□ 0.34
SQLE-203ENST00000518931 C1QBPQ07021 282 aaKnown RBP17.13■□□□□ 0.33
SQLE-203ENST00000518931 ATXN8OSP0DMR3 200 aa17.08■□□□□ 0.32
SQLE-203ENST00000518931 APLP2Q06481 763 aa17.01■□□□□ 0.31
SQLE-203ENST00000518931 ATF5Q9Y2D1 282 aaPredicted RBP17■□□□□ 0.31
SQLE-203ENST00000518931 SPINK5Q9NQ38 1064 aaPredicted RBP16.93■□□□□ 0.3
SQLE-203ENST00000518931 CAPN15O75808 1086 aa16.87■□□□□ 0.29
SQLE-203ENST00000518931 CACNB1Q02641 598 aaPredicted RBP16.85■□□□□ 0.29
SQLE-203ENST00000518931 TRHP20396 242 aaPredicted RBP16.83■□□□□ 0.28
SQLE-203ENST00000518931 ZNF219Q9P2Y4 722 aaPredicted RBP16.77■□□□□ 0.28
SQLE-203ENST00000518931 POLA2Q14181 598 aa16.58■□□□□ 0.24
SQLE-203ENST00000518931 ABCB7O75027 752 aa16.56■□□□□ 0.24
SQLE-203ENST00000518931 DSG3P32926 999 aa16.54■□□□□ 0.24
SQLE-203ENST00000518931 FBLN2P98095 1184 aa16.25■□□□□ 0.19
SQLE-203ENST00000518931 MKRN4PQ13434 485 aaPredicted RBP16.24■□□□□ 0.19
SQLE-203ENST00000518931 ZBTB12Q9Y330 459 aaPredicted RBP16.23■□□□□ 0.19
SQLE-203ENST00000518931 FKBP8Q14318 412 aa16.05■□□□□ 0.16
SQLE-203ENST00000518931 OSCARQ8IYS5 282 aa15.97■□□□□ 0.15
SQLE-203ENST00000518931 SPDYE4A6NLX3 237 aa15.93■□□□□ 0.14
SQLE-203ENST00000518931 SPDYE2BA6NHP3 402 aa15.83■□□□□ 0.12
SQLE-203ENST00000518931 SPDYE6P0CI01 402 aa15.83■□□□□ 0.12
SQLE-203ENST00000518931 SPDYE2Q495Y8 402 aa15.83■□□□□ 0.12
SQLE-203ENST00000518931 ZNF692Q9BU19 519 aaPredicted RBP15.83■□□□□ 0.12
SQLE-203ENST00000518931 RBM42Q9BTD8 480 aaKnown RBP15.73■□□□□ 0.11
SQLE-203ENST00000518931 SSUH2Q9Y2M2 353 aa15.7■□□□□ 0.1
SQLE-203ENST00000518931 PROM2Q8N271 834 aa15.63■□□□□ 0.09
SQLE-203ENST00000518931 PABPN1Q86U42 306 aaKnown RBP eCLIP15.61■□□□□ 0.09
SQLE-203ENST00000518931 AKT1S1Q96B36 256 aa15.58■□□□□ 0.08
SQLE-203ENST00000518931 REM2Q8IYK8 340 aaPredicted RBP15.45■□□□□ 0.06
SQLE-203ENST00000518931 FBXO3Q9UK99 471 aa15.43■□□□□ 0.06
SQLE-203ENST00000518931 SPDYE1Q8NFV5 336 aaPredicted RBP15.35■□□□□ 0.05
SQLE-203ENST00000518931 STAG3Q9UJ98 1225 aa15.35■□□□□ 0.05
SQLE-203ENST00000518931 CLEC11AQ9Y240 323 aa15.32■□□□□ 0.04
SQLE-203ENST00000518931 PITPNM1O00562 1244 aa15.26■□□□□ 0.03
SQLE-203ENST00000518931 VASPP50552 380 aaPredicted RBP15.21■□□□□ 0.03
SQLE-203ENST00000518931 PRR29P0C7W0 189 aa15.19■□□□□ 0.02
SQLE-203ENST00000518931 MIER1Q8N108 512 aa15.14■□□□□ 0.01
SQLE-203ENST00000518931 PLCD3Q8N3E9 789 aa15.11■□□□□ 0.01
SQLE-203ENST00000518931 CHRDL2Q6WN34 429 aa15.07■□□□□ 0
SQLE-203ENST00000518931 IFNLR1Q8IU57 520 aaPredicted RBP15.04■□□□□ -0
SQLE-203ENST00000518931 PLEKHG5O94827 1062 aa15.02■□□□□ -0
SQLE-203ENST00000518931 KLHL34Q8N239 644 aa14.99□□□□□ -0.01
SQLE-203ENST00000518931 CREBZFQ9NS37 354 aa14.99□□□□□ -0.01
SQLE-203ENST00000518931 FXR2P51116 673 aaKnown RBP eCLIP14.95□□□□□ -0.022e-7■■□□□ 12.3
SQLE-203ENST00000518931 CHADLQ6NUI6 762 aa14.93□□□□□ -0.02
SQLE-203ENST00000518931 PIP4P2Q8N4L2 257 aa14.9□□□□□ -0.02
SQLE-203ENST00000518931 PRKAR2AP13861 404 aaKnown RBP14.89□□□□□ -0.03
SQLE-203ENST00000518931 ZBTB47Q9UFB7 747 aaPredicted RBP14.89□□□□□ -0.03
SQLE-203ENST00000518931 SPOCK2Q92563 424 aa14.84□□□□□ -0.03
SQLE-203ENST00000518931 MNX1P50219 401 aaPredicted RBP14.83□□□□□ -0.04
SQLE-203ENST00000518931 FARP1Q9Y4F1 1045 aaPredicted RBP14.78□□□□□ -0.04
SQLE-203ENST00000518931 AMER1Q5JTC6 1135 aaPredicted RBP14.76□□□□□ -0.05
SQLE-203ENST00000518931 NPM1P06748 294 aaKnown RBP eCLIP14.75□□□□□ -0.05
SQLE-203ENST00000518931 RTN4Q9NQC3 1192 aaKnown RBP14.75□□□□□ -0.05
SQLE-203ENST00000518931 NUBP1P53384 320 aa14.69□□□□□ -0.06
SQLE-203ENST00000518931 DCAF8Q5TAQ9 597 aa14.62□□□□□ -0.07
SQLE-203ENST00000518931 CIZ1Q9ULV3 898 aaPredicted RBP14.62□□□□□ -0.07
SQLE-203ENST00000518931 RASEFQ8IZ41 740 aa14.61□□□□□ -0.07
SQLE-203ENST00000518931 PKD2Q13563 968 aa14.56□□□□□ -0.08
SQLE-203ENST00000518931 GSE1Q14687 1217 aa14.56□□□□□ -0.08
SQLE-203ENST00000518931 FAM212AQ96EL1 285 aa14.56□□□□□ -0.08
SQLE-203ENST00000518931 TSPYL2Q9H2G4 693 aaPredicted RBP14.54□□□□□ -0.08
SQLE-203ENST00000518931 POTEHQ6S545 545 aa14.48□□□□□ -0.09
SQLE-203ENST00000518931 PAK3O75914 559 aaPredicted RBP14.47□□□□□ -0.09
SQLE-203ENST00000518931 ECM2O94769 699 aaPredicted RBP14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms