RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 KRTAP3-3Q9BYR6 98 aa5.36□□□□□ -1.55
TCOF1-211ENST00000513346 MT1HL1P0DM35 61 aa5.35□□□□□ -1.55
TCOF1-211ENST00000513346 DNAH7Q8WXX0 4024 aa5.35□□□□□ -1.55
TCOF1-211ENST00000513346 PLECQ15149 4684 aaKnown RBP5.33□□□□□ -1.56
TCOF1-211ENST00000513346 DNAH5Q8TE73 4624 aa5.33□□□□□ -1.56
TCOF1-211ENST00000513346 DNAH3Q8TD57 4116 aa5.32□□□□□ -1.56
TCOF1-211ENST00000513346 KIAA1109Q2LD37 5005 aa5.3□□□□□ -1.56
TCOF1-211ENST00000513346 KRTAP10-4P60372 401 aaPredicted RBP5.3□□□□□ -1.56
TCOF1-211ENST00000513346 DNAH1Q9P2D7 4330 aa5.28□□□□□ -1.56
TCOF1-211ENST00000513346 RYR1P21817 5038 aa5.27□□□□□ -1.57
TCOF1-211ENST00000513346 DNAH11Q96DT5 4516 aa5.25□□□□□ -1.57
TCOF1-211ENST00000513346 STARD9Q9P2P6 4700 aa5.25□□□□□ -1.57
TCOF1-211ENST00000513346 FAT1Q14517 4588 aa5.24□□□□□ -1.57
TCOF1-211ENST00000513346 HYDINQ4G0P3 5121 aa5.19□□□□□ -1.58
TCOF1-211ENST00000513346 RYR3Q15413 4870 aa5.18□□□□□ -1.58
TCOF1-211ENST00000513346 FRAS1Q86XX4 4008 aa5.17□□□□□ -1.58
TCOF1-211ENST00000513346 KMT2AQ03164 3969 aa5.16□□□□□ -1.58
TCOF1-211ENST00000513346 DYNC1H1Q14204 4646 aaKnown RBP5.15□□□□□ -1.59
TCOF1-211ENST00000513346 ALMS1Q8TCU4 4167 aa5.13□□□□□ -1.59
TCOF1-211ENST00000513346 INE1O15225 51 aa5.13□□□□□ -1.59
TCOF1-211ENST00000513346 LRP1BQ9NZR2 4599 aa5.1□□□□□ -1.59
TCOF1-211ENST00000513346 VPS13DQ5THJ4 4388 aa5.09□□□□□ -1.59
TCOF1-211ENST00000513346 DNAH2Q9P225 4427 aa5.07□□□□□ -1.6
TCOF1-211ENST00000513346 HECTD4Q9Y4D8 3996 aa5.05□□□□□ -1.6
TCOF1-211ENST00000513346 DNAH17Q9UFH2 4485 aa5.04□□□□□ -1.6
TCOF1-211ENST00000513346 DNAH6Q9C0G6 4158 aa5.04□□□□□ -1.6
TCOF1-211ENST00000513346 DNAH8Q96JB1 4490 aa5.02□□□□□ -1.61
TCOF1-211ENST00000513346 DYNC2H1Q8NCM8 4307 aaKnown RBP5.01□□□□□ -1.61
TCOF1-211ENST00000513346 KMT2CQ8NEZ4 4911 aaKnown RBP5□□□□□ -1.61
TCOF1-211ENST00000513346 KRTAP23-1A1A580 65 aa4.98□□□□□ -1.61
TCOF1-211ENST00000513346 KRTAP17-1Q9BYP8 105 aa4.97□□□□□ -1.61
TCOF1-211ENST00000513346 HERC2O95714 4834 aa4.97□□□□□ -1.61
TCOF1-211ENST00000513346 MYCBP2O75592 4640 aa4.96□□□□□ -1.61
TCOF1-211ENST00000513346 FAT3Q8TDW7 4589 aa4.95□□□□□ -1.62
TCOF1-211ENST00000513346 VPS13BQ7Z7G8 4022 aa4.95□□□□□ -1.62
TCOF1-211ENST00000513346 SACSQ9NZJ4 4579 aa4.95□□□□□ -1.62
TCOF1-211ENST00000513346 RYR2Q92736 4967 aa4.93□□□□□ -1.62
TCOF1-211ENST00000513346 APOBP04114 4563 aaKnown RBP4.9□□□□□ -1.62
TCOF1-211ENST00000513346 LORP23490 312 aaPredicted RBP4.89□□□□□ -1.63
TCOF1-211ENST00000513346 LRP1Q07954 4544 aaKnown RBP4.88□□□□□ -1.63
TCOF1-211ENST00000513346 BIRC6Q9NR09 4857 aa4.87□□□□□ -1.63
TCOF1-211ENST00000513346 FAT2Q9NYQ8 4349 aa4.86□□□□□ -1.63
TCOF1-211ENST00000513346 PKHD1P08F94 4074 aa4.83□□□□□ -1.64
TCOF1-211ENST00000513346 PCLOQ9Y6V0 5065 aa4.83□□□□□ -1.64
TCOF1-211ENST00000513346 KRTAP4-1Q9BYQ7 146 aa4.79□□□□□ -1.64
TCOF1-211ENST00000513346 EPPK1P58107 5090 aaKnown RBP4.79□□□□□ -1.64
TCOF1-211ENST00000513346 PKD1P98161 4303 aa4.78□□□□□ -1.64
TCOF1-211ENST00000513346 KRTAP10-12P60413 245 aa4.77□□□□□ -1.65
TCOF1-211ENST00000513346 LCE3AQ5TA76 89 aa4.75□□□□□ -1.65
TCOF1-211ENST00000513346 LRP2P98164 4655 aa4.74□□□□□ -1.65
TCOF1-211ENST00000513346 KRTAP12-3P60328 96 aa4.72□□□□□ -1.65
TCOF1-211ENST00000513346 ABCA13Q86UQ4 5058 aa4.63□□□□□ -1.67
TCOF1-211ENST00000513346 HSPG2P98160 4391 aa4.63□□□□□ -1.67
TCOF1-211ENST00000513346 MT1HP80294 61 aa4.61□□□□□ -1.67
TCOF1-211ENST00000513346 CRCT1Q9UGL9 99 aa4.58□□□□□ -1.68
TCOF1-211ENST00000513346 FSIP2Q5CZC0 6907 aa4.58□□□□□ -1.68
TCOF1-211ENST00000513346 HERC1Q15751 4861 aa4.51□□□□□ -1.69
TCOF1-211ENST00000513346 UBR4Q5T4S7 5183 aa4.5□□□□□ -1.69
TCOF1-211ENST00000513346 MT2AP02795 61 aa4.49□□□□□ -1.69
TCOF1-211ENST00000513346 PKHD1L1Q86WI1 4243 aa4.49□□□□□ -1.69
TCOF1-211ENST00000513346 KRTAP8-1Q8IUC2 63 aa4.46□□□□□ -1.7
TCOF1-211ENST00000513346 LPAP08519 4548 aa4.45□□□□□ -1.7
TCOF1-211ENST00000513346 RNF213Q63HN8 5207 aa4.44□□□□□ -1.7
TCOF1-211ENST00000513346 SPRR5A0A1B0GTR4 108 aa4.44□□□□□ -1.7
TCOF1-211ENST00000513346 SPRR2GQ9BYE4 73 aa4.43□□□□□ -1.7
TCOF1-211ENST00000513346 MT1FP04733 61 aa4.42□□□□□ -1.7
TCOF1-211ENST00000513346 TNXBP22105 4242 aa4.37□□□□□ -1.71
TCOF1-211ENST00000513346 KRTAP19-1Q8IUB9 90 aa4.26□□□□□ -1.73
TCOF1-211ENST00000513346 MUC2Q02817 5179 aa4.25□□□□□ -1.73
TCOF1-211ENST00000513346 KRTAP10-5P60370 271 aa4.24□□□□□ -1.73
TCOF1-211ENST00000513346 LCE3CQ5T5A8 94 aa4.24□□□□□ -1.73
TCOF1-211ENST00000513346 LCE2CQ5TA81 110 aa4.22□□□□□ -1.73
TCOF1-211ENST00000513346 FAT4Q6V0I7 4981 aa4.2□□□□□ -1.74
TCOF1-211ENST00000513346 SPRR2FQ96RM1 72 aa4.19□□□□□ -1.74
TCOF1-211ENST00000513346 KRTAP19-5Q3LI72 72 aa4.18□□□□□ -1.74
TCOF1-211ENST00000513346 KRTAP19-8Q3LI54 63 aa4.17□□□□□ -1.74
TCOF1-211ENST00000513346 KRTAP9-8Q9BYQ0 159 aa4.15□□□□□ -1.74
TCOF1-211ENST00000513346 HMCN2Q8NDA2 5059 aa4.14□□□□□ -1.75
TCOF1-211ENST00000513346 KRTAP10-7P60409 375 aaPredicted RBP4.1□□□□□ -1.75
TCOF1-211ENST00000513346 MT1BP07438 61 aa4.09□□□□□ -1.76
TCOF1-211ENST00000513346 KRTAP19-4Q3LI73 84 aa4.09□□□□□ -1.76
TCOF1-211ENST00000513346 KRTAP9-2Q9BYQ4 174 aa4.09□□□□□ -1.76
TCOF1-211ENST00000513346 MT1XP80297 61 aa4.07□□□□□ -1.76
TCOF1-211ENST00000513346 KRTAP19-2Q3LHN2 52 aa4.06□□□□□ -1.76
TCOF1-211ENST00000513346 MUC17Q685J3 4493 aa4.05□□□□□ -1.76
TCOF1-211ENST00000513346 KRTAP9-3Q9BYQ3 159 aa4.03□□□□□ -1.76
TCOF1-211ENST00000513346 LCE2BO14633 110 aa3.99□□□□□ -1.77
TCOF1-211ENST00000513346 SPRR2EP22531 72 aa3.99□□□□□ -1.77
TCOF1-211ENST00000513346 SPRR2BP35325 72 aa3.99□□□□□ -1.77
TCOF1-211ENST00000513346 SPRR2AP35326 72 aa3.99□□□□□ -1.77
TCOF1-211ENST00000513346 LCE2AQ5TA79 106 aaPredicted RBP3.96□□□□□ -1.78
TCOF1-211ENST00000513346 FLGP20930 4061 aaPredicted RBP3.96□□□□□ -1.78
TCOF1-211ENST00000513346 KRTAP4-8A0A0G2JLE6 195 aa3.93□□□□□ -1.78
TCOF1-211ENST00000513346 KRTAP4-8Q9BYQ9 185 aa3.93□□□□□ -1.78
TCOF1-211ENST00000513346 LCE2DQ5TA82 110 aaPredicted RBP3.92□□□□□ -1.78
TCOF1-211ENST00000513346 KRTAP12-4P60329 112 aa3.91□□□□□ -1.78
TCOF1-211ENST00000513346 SYNE1Q8NF91 8797 aaKnown RBP3.88□□□□□ -1.79
TCOF1-211ENST00000513346 SPRR2DP22532 72 aa3.88□□□□□ -1.79
TCOF1-211ENST00000513346 KRTAP9-6A0A140TA67 174 aa3.86□□□□□ -1.79
TCOF1-211ENST00000513346 KRTAP19-6Q3LI70 58 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 134.6 ms