RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 NISCHQ9Y2I1 1504 aa19.62■□□□□ 0.73
TCOF1-211ENST00000513346 DCAF8L2P0C7V8 631 aa19.58■□□□□ 0.73
TCOF1-211ENST00000513346 SUPT5HO00267 1087 aaKnown RBP18.45■□□□□ 0.54
TCOF1-211ENST00000513346 SHROOM4Q9ULL8 1493 aa18.37■□□□□ 0.53
TCOF1-211ENST00000513346 PELP1Q8IZL8 1130 aaKnown RBP18.15■□□□□ 0.5
TCOF1-211ENST00000513346 PCGF6Q9BYE7 350 aa17.9■□□□□ 0.46
TCOF1-211ENST00000513346 MYT1Q01538 1121 aa17.82■□□□□ 0.44
TCOF1-211ENST00000513346 HRCP23327 699 aa17.67■□□□□ 0.42
TCOF1-211ENST00000513346 ZEB1P37275 1124 aaPredicted RBP17.59■□□□□ 0.41
TCOF1-211ENST00000513346 EHMT2Q96KQ7 1210 aa17.59■□□□□ 0.41
TCOF1-211ENST00000513346 CENPBP07199 599 aaPredicted RBP17.51■□□□□ 0.39
TCOF1-211ENST00000513346 FAM9AQ8IZU1 332 aaPredicted RBP17.32■□□□□ 0.36
TCOF1-211ENST00000513346 ABCC9O60706 1549 aa17.32■□□□□ 0.36
TCOF1-211ENST00000513346 APLP2Q06481 763 aa17.23■□□□□ 0.35
TCOF1-211ENST00000513346 PPARGC1BQ86YN6 1023 aaKnown RBP17.2■□□□□ 0.34
TCOF1-211ENST00000513346 TRIM26Q12899 539 aaPredicted RBP17.17■□□□□ 0.34
TCOF1-211ENST00000513346 CCER1Q8TC90 406 aaPredicted RBP17.12■□□□□ 0.33
TCOF1-211ENST00000513346 TRIM41Q8WV44 630 aa17.08■□□□□ 0.33
TCOF1-211ENST00000513346 PABPN1Q86U42 306 aaKnown RBP eCLIP17.07■□□□□ 0.32
TCOF1-211ENST00000513346 TTBK1Q5TCY1 1321 aaPredicted RBP16.96■□□□□ 0.31
TCOF1-211ENST00000513346 CHIC1Q5VXU3 224 aa16.93■□□□□ 0.3
TCOF1-211ENST00000513346 YTHDC1Q96MU7 727 aaKnown RBP16.93■□□□□ 0.3
TCOF1-211ENST00000513346 RANGAP1P46060 587 aaPredicted RBP16.91■□□□□ 0.3
TCOF1-211ENST00000513346 ERICH6Q7L0X2 663 aa16.89■□□□□ 0.29
TCOF1-211ENST00000513346 LOC105371045A0A1W2PR82 267 aa16.79■□□□□ 0.28
TCOF1-211ENST00000513346 UBTFP17480 764 aaKnown RBP16.77■□□□□ 0.27
TCOF1-211ENST00000513346 ATP1B4Q9UN42 357 aaPredicted RBP16.74■□□□□ 0.27
TCOF1-211ENST00000513346 GTF3C3Q9Y5Q9 886 aa16.67■□□□□ 0.26
TCOF1-211ENST00000513346 NEFLP07196 543 aa16.66■□□□□ 0.26
TCOF1-211ENST00000513346 DIEXFQ68CQ4 756 aaKnown RBP16.65■□□□□ 0.26
TCOF1-211ENST00000513346 ACIN1Q9UKV3 1341 aaKnown RBP16.59■□□□□ 0.25
TCOF1-211ENST00000513346 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.48■□□□□ 0.23
TCOF1-211ENST00000513346 SCAF1Q9H7N4 1312 aaKnown RBP16.45■□□□□ 0.22
TCOF1-211ENST00000513346 CCDC180Q9P1Z9 1646 aa16.4■□□□□ 0.22
TCOF1-211ENST00000513346 ZCCHC6Q5VYS8 1495 aaKnown RBP16.31■□□□□ 0.2
TCOF1-211ENST00000513346 DCAF1Q9Y4B6 1507 aa16.3■□□□□ 0.2
TCOF1-211ENST00000513346 NEUROD1Q13562 356 aa16.26■□□□□ 0.19
TCOF1-211ENST00000513346 HNRNPUL2Q1KMD3 747 aaKnown RBP16.24■□□□□ 0.19
TCOF1-211ENST00000513346 ZNF316A6NFI3 1004 aaPredicted RBP16.22■□□□□ 0.19
TCOF1-211ENST00000513346 RB1CC1Q8TDY2 1594 aa16.16■□□□□ 0.18
TCOF1-211ENST00000513346 ITGAEP38570 1179 aa16.15■□□□□ 0.18
TCOF1-211ENST00000513346 SCRIBQ14160 1630 aa16.11■□□□□ 0.17
TCOF1-211ENST00000513346 MYT1LQ9UL68 1186 aa16.11■□□□□ 0.17
TCOF1-211ENST00000513346 FBLN2P98095 1184 aa16.07■□□□□ 0.16
TCOF1-211ENST00000513346 CLSPNQ9HAW4 1339 aa16.07■□□□□ 0.16
TCOF1-211ENST00000513346 BCANQ96GW7 911 aa16.06■□□□□ 0.16
TCOF1-211ENST00000513346 RTL5Q5HYW3 569 aaPredicted RBP16.04■□□□□ 0.16
TCOF1-211ENST00000513346 NACADO15069 1562 aa16.01■□□□□ 0.15
TCOF1-211ENST00000513346 MYO15BQ96JP2 1530 aa15.97■□□□□ 0.15
TCOF1-211ENST00000513346 CDK11AQ9UQ88 783 aaPredicted RBP15.92■□□□□ 0.14
TCOF1-211ENST00000513346 DAXXQ9UER7 740 aaPredicted RBP15.91■□□□□ 0.14
TCOF1-211ENST00000513346 CSRNP3Q8WYN3 585 aa15.86■□□□□ 0.13
TCOF1-211ENST00000513346 POLR3GLQ9BT43 218 aa15.85■□□□□ 0.13
TCOF1-211ENST00000513346 ANP32EQ9BTT0 268 aa15.81■□□□□ 0.12
TCOF1-211ENST00000513346 FAM50AQ14320 339 aaKnown RBP15.79■□□□□ 0.12
TCOF1-211ENST00000513346 MIER1Q8N108 512 aa15.77■□□□□ 0.12
TCOF1-211ENST00000513346 FKBP8Q14318 412 aa15.77■□□□□ 0.11
TCOF1-211ENST00000513346 ANP32CO43423 234 aa15.75■□□□□ 0.11
TCOF1-211ENST00000513346 RSF1Q96T23 1441 aaPredicted RBP15.71■□□□□ 0.11
TCOF1-211ENST00000513346 ARID3CA6NKF2 412 aa15.69■□□□□ 0.1
TCOF1-211ENST00000513346 CNGB1Q14028 1251 aaPredicted RBP15.69■□□□□ 0.1
TCOF1-211ENST00000513346 TRIM52Q96A61 297 aa15.67■□□□□ 0.1
TCOF1-211ENST00000513346 BCL11AQ9H165 835 aa15.65■□□□□ 0.1
TCOF1-211ENST00000513346 P3H3Q8IVL6 736 aa15.64■□□□□ 0.09
TCOF1-211ENST00000513346 ANP32AP39687 249 aaKnown RBP15.6■□□□□ 0.09
TCOF1-211ENST00000513346 NPM1P06748 294 aaKnown RBP eCLIP15.59■□□□□ 0.09
TCOF1-211ENST00000513346 SLC4A1APQ9BWU0 796 aaKnown RBP15.57■□□□□ 0.08
TCOF1-211ENST00000513346 BAZ1BQ9UIG0 1483 aaKnown RBP15.53■□□□□ 0.08
TCOF1-211ENST00000513346 EIF5BO60841 1220 aaKnown RBP15.5■□□□□ 0.07
TCOF1-211ENST00000513346 SUPT16HQ9Y5B9 1047 aaKnown RBP15.5■□□□□ 0.07
TCOF1-211ENST00000513346 CHMP7Q8WUX9 453 aaPredicted RBP15.48■□□□□ 0.07
TCOF1-211ENST00000513346 ERCC6Q03468 1493 aa15.47■□□□□ 0.07
TCOF1-211ENST00000513346 CECR2Q9BXF3 1484 aa15.47■□□□□ 0.07
TCOF1-211ENST00000513346 DDX10Q13206 875 aaKnown RBP15.45■□□□□ 0.06
TCOF1-211ENST00000513346 NBR1Q14596 966 aa15.45■□□□□ 0.06
TCOF1-211ENST00000513346 ZNF326Q5BKZ1 582 aaKnown RBP15.45■□□□□ 0.06
TCOF1-211ENST00000513346 HNRNPUQ00839 825 aaKnown RBP eCLIP15.42■□□□□ 0.06
TCOF1-211ENST00000513346 BAZ1AQ9NRL2 1556 aaPredicted RBP15.41■□□□□ 0.06
TCOF1-211ENST00000513346 ZNF777Q9ULD5 760 aaPredicted RBP15.4■□□□□ 0.06
TCOF1-211ENST00000513346 ZBTB47Q9UFB7 747 aaPredicted RBP15.38■□□□□ 0.05
TCOF1-211ENST00000513346 NPM2Q86SE8 214 aaKnown RBP15.37■□□□□ 0.05
TCOF1-211ENST00000513346 GLIPR1L2Q4G1C9 344 aa15.34■□□□□ 0.05
TCOF1-211ENST00000513346 WRNQ14191 1432 aaPredicted RBP eCLIP15.33■□□□□ 0.04
TCOF1-211ENST00000513346 CLIP1P30622 1438 aa15.32■□□□□ 0.04
TCOF1-211ENST00000513346 PLPPR3Q6T4P5 718 aa15.31■□□□□ 0.04
TCOF1-211ENST00000513346 ESF1Q9H501 851 aaKnown RBP15.31■□□□□ 0.04
TCOF1-211ENST00000513346 TSHZ2Q9NRE2 1034 aa15.31■□□□□ 0.04
TCOF1-211ENST00000513346 EEA1Q15075 1411 aa15.29■□□□□ 0.04
TCOF1-211ENST00000513346 CEP162Q5TB80 1403 aa15.28■□□□□ 0.04
TCOF1-211ENST00000513346 IRX6P78412 446 aaPredicted RBP15.27■□□□□ 0.03
TCOF1-211ENST00000513346 RBM19Q9Y4C8 960 aaKnown RBP15.27■□□□□ 0.03
TCOF1-211ENST00000513346 CCDC136Q96JN2 1154 aa15.26■□□□□ 0.03
TCOF1-211ENST00000513346 MROH2BQ7Z745 1585 aa15.26■□□□□ 0.03
TCOF1-211ENST00000513346 GOLGA3Q08378 1498 aa15.25■□□□□ 0.03
TCOF1-211ENST00000513346 PDS5BQ9NTI5 1447 aa15.24■□□□□ 0.03
TCOF1-211ENST00000513346 SMARCA2P51531 1590 aa15.24■□□□□ 0.03
TCOF1-211ENST00000513346 TONSLQ96HA7 1378 aa15.21■□□□□ 0.03
TCOF1-211ENST00000513346 FAM9BQ8IZU0 186 aa15.21■□□□□ 0.03
TCOF1-211ENST00000513346 DEKP35659 375 aaKnown RBP15.18■□□□□ 0.02
TCOF1-211ENST00000513346 TNIKQ9UKE5 1360 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms