RNA–Protein interactions for RNA: ENST00000502717.5

HMGXB3-201, Transcript of HMG-box containing 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGXB3, Length 4,974 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3-201ENST00000502717 DNAH5Q8TE73 4624 aa7.73□□□□□ -1.17
HMGXB3-201ENST00000502717 VPS13DQ5THJ4 4388 aa7.73□□□□□ -1.17
HMGXB3-201ENST00000502717 KRTAP4-5Q9BYR2 181 aa7.71□□□□□ -1.18
HMGXB3-201ENST00000502717 DNHD1Q96M86 4753 aa7.68□□□□□ -1.18
HMGXB3-201ENST00000502717 KRTAP23-1A1A580 65 aa7.67□□□□□ -1.18
HMGXB3-201ENST00000502717 DNAH11Q96DT5 4516 aa7.67□□□□□ -1.18
HMGXB3-201ENST00000502717 DNAH17Q9UFH2 4485 aa7.64□□□□□ -1.19
HMGXB3-201ENST00000502717 DNAH10Q8IVF4 4471 aa7.62□□□□□ -1.19
HMGXB3-201ENST00000502717 STARD9Q9P2P6 4700 aa7.58□□□□□ -1.2
HMGXB3-201ENST00000502717 LORP23490 312 aaPredicted RBP7.51□□□□□ -1.21
HMGXB3-201ENST00000502717 ANK2Q01484 3957 aa7.48□□□□□ -1.21
HMGXB3-201ENST00000502717 DYNC1H1Q14204 4646 aaKnown RBP7.47□□□□□ -1.21
HMGXB3-201ENST00000502717 DNAH8Q96JB1 4490 aa7.46□□□□□ -1.21
HMGXB3-201ENST00000502717 PRKDCP78527 4128 aaKnown RBP7.45□□□□□ -1.22
HMGXB3-201ENST00000502717 DNAH2Q9P225 4427 aa7.43□□□□□ -1.22
HMGXB3-201ENST00000502717 DNAH3Q8TD57 4116 aa7.42□□□□□ -1.22
HMGXB3-201ENST00000502717 LRP1BQ9NZR2 4599 aa7.41□□□□□ -1.22
HMGXB3-201ENST00000502717 FAT1Q14517 4588 aa7.37□□□□□ -1.23
HMGXB3-201ENST00000502717 DYNC2H1Q8NCM8 4307 aaKnown RBP7.35□□□□□ -1.23
HMGXB3-201ENST00000502717 KRTAP10-12P60413 245 aa7.29□□□□□ -1.24
HMGXB3-201ENST00000502717 LCE3AQ5TA76 89 aa7.29□□□□□ -1.24
HMGXB3-201ENST00000502717 KRTAP12-3P60328 96 aa7.26□□□□□ -1.25
HMGXB3-201ENST00000502717 KMT2AQ03164 3969 aa7.25□□□□□ -1.25
HMGXB3-201ENST00000502717 SACSQ9NZJ4 4579 aa7.24□□□□□ -1.25
HMGXB3-201ENST00000502717 FAT2Q9NYQ8 4349 aa7.24□□□□□ -1.25
HMGXB3-201ENST00000502717 CMYA5Q8N3K9 4069 aa7.2□□□□□ -1.26
HMGXB3-201ENST00000502717 RYR1P21817 5038 aa7.15□□□□□ -1.26
HMGXB3-201ENST00000502717 KRTAP4-1Q9BYQ7 146 aa7.14□□□□□ -1.27
HMGXB3-201ENST00000502717 VPS13BQ7Z7G8 4022 aa7.09□□□□□ -1.28
HMGXB3-201ENST00000502717 DNAH6Q9C0G6 4158 aa7.06□□□□□ -1.28
HMGXB3-201ENST00000502717 KIAA1109Q2LD37 5005 aa7.03□□□□□ -1.28
HMGXB3-201ENST00000502717 LYSTQ99698 3801 aa7.02□□□□□ -1.29
HMGXB3-201ENST00000502717 CRCT1Q9UGL9 99 aa7.01□□□□□ -1.29
HMGXB3-201ENST00000502717 KRTAP8-1Q8IUC2 63 aa6.99□□□□□ -1.29
HMGXB3-201ENST00000502717 APOBP04114 4563 aaKnown RBP6.99□□□□□ -1.29
HMGXB3-201ENST00000502717 FRAS1Q86XX4 4008 aa6.97□□□□□ -1.29
HMGXB3-201ENST00000502717 HECTD4Q9Y4D8 3996 aa6.97□□□□□ -1.29
HMGXB3-201ENST00000502717 DNAH7Q8WXX0 4024 aa6.96□□□□□ -1.29
HMGXB3-201ENST00000502717 RYR3Q15413 4870 aa6.95□□□□□ -1.3
HMGXB3-201ENST00000502717 KRTAP17-1Q9BYP8 105 aa6.93□□□□□ -1.3
HMGXB3-201ENST00000502717 SPRR2GQ9BYE4 73 aa6.88□□□□□ -1.31
HMGXB3-201ENST00000502717 MYCBP2O75592 4640 aa6.87□□□□□ -1.31
HMGXB3-201ENST00000502717 MT1HP80294 61 aa6.87□□□□□ -1.31
HMGXB3-201ENST00000502717 RYR2Q92736 4967 aa6.86□□□□□ -1.31
HMGXB3-201ENST00000502717 LRP1Q07954 4544 aaKnown RBP6.83□□□□□ -1.32
HMGXB3-201ENST00000502717 HYDINQ4G0P3 5121 aa6.78□□□□□ -1.32
HMGXB3-201ENST00000502717 MT2AP02795 61 aa6.77□□□□□ -1.33
HMGXB3-201ENST00000502717 SPRR5A0A1B0GTR4 108 aa6.75□□□□□ -1.33
HMGXB3-201ENST00000502717 FAT3Q8TDW7 4589 aa6.72□□□□□ -1.33
HMGXB3-201ENST00000502717 MT1FP04733 61 aa6.65□□□□□ -1.34
HMGXB3-201ENST00000502717 PKHD1P08F94 4074 aa6.65□□□□□ -1.35
HMGXB3-201ENST00000502717 HERC2O95714 4834 aa6.59□□□□□ -1.35
HMGXB3-201ENST00000502717 HSPG2P98160 4391 aa6.59□□□□□ -1.35
HMGXB3-201ENST00000502717 PKD1P98161 4303 aa6.59□□□□□ -1.35
HMGXB3-201ENST00000502717 SPRR2FQ96RM1 72 aa6.57□□□□□ -1.36
HMGXB3-201ENST00000502717 LCE3CQ5T5A8 94 aa6.51□□□□□ -1.37
HMGXB3-201ENST00000502717 KRTAP19-1Q8IUB9 90 aa6.49□□□□□ -1.37
HMGXB3-201ENST00000502717 LRP2P98164 4655 aa6.49□□□□□ -1.37
HMGXB3-201ENST00000502717 BIRC6Q9NR09 4857 aa6.47□□□□□ -1.37
HMGXB3-201ENST00000502717 KRTAP10-5P60370 271 aa6.46□□□□□ -1.38
HMGXB3-201ENST00000502717 KRTAP19-5Q3LI72 72 aa6.45□□□□□ -1.38
HMGXB3-201ENST00000502717 KRTAP10-7P60409 375 aaPredicted RBP6.45□□□□□ -1.38
HMGXB3-201ENST00000502717 KMT2CQ8NEZ4 4911 aaKnown RBP6.44□□□□□ -1.38
HMGXB3-201ENST00000502717 KRTAP19-8Q3LI54 63 aa6.41□□□□□ -1.38
HMGXB3-201ENST00000502717 KRTAP19-4Q3LI73 84 aa6.36□□□□□ -1.39
HMGXB3-201ENST00000502717 LCE2CQ5TA81 110 aa6.34□□□□□ -1.4
HMGXB3-201ENST00000502717 PKHD1L1Q86WI1 4243 aa6.29□□□□□ -1.4
HMGXB3-201ENST00000502717 KRTAP9-8Q9BYQ0 159 aa6.28□□□□□ -1.4
HMGXB3-201ENST00000502717 HERC1Q15751 4861 aa6.27□□□□□ -1.41
HMGXB3-201ENST00000502717 MT1XP80297 61 aa6.27□□□□□ -1.41
HMGXB3-201ENST00000502717 TNXBP22105 4242 aa6.25□□□□□ -1.41
HMGXB3-201ENST00000502717 SPRR2EP22531 72 aa6.24□□□□□ -1.41
HMGXB3-201ENST00000502717 SPRR2BP35325 72 aa6.24□□□□□ -1.41
HMGXB3-201ENST00000502717 SPRR2AP35326 72 aa6.24□□□□□ -1.41
HMGXB3-201ENST00000502717 KRTAP19-2Q3LHN2 52 aa6.21□□□□□ -1.41
HMGXB3-201ENST00000502717 LPAP08519 4548 aa6.2□□□□□ -1.42
HMGXB3-201ENST00000502717 MT1BP07438 61 aa6.19□□□□□ -1.42
HMGXB3-201ENST00000502717 PCLOQ9Y6V0 5065 aa6.17□□□□□ -1.42
HMGXB3-201ENST00000502717 EPPK1P58107 5090 aaKnown RBP6.13□□□□□ -1.43
HMGXB3-201ENST00000502717 KRTAP9-3Q9BYQ3 159 aa6.1□□□□□ -1.43
HMGXB3-201ENST00000502717 ABCA13Q86UQ4 5058 aa6.1□□□□□ -1.43
HMGXB3-201ENST00000502717 SPRR2DP22532 72 aa6.06□□□□□ -1.44
HMGXB3-201ENST00000502717 MUC17Q685J3 4493 aa6.06□□□□□ -1.44
HMGXB3-201ENST00000502717 LCE2BO14633 110 aa5.99□□□□□ -1.45
HMGXB3-201ENST00000502717 FLGP20930 4061 aaPredicted RBP5.97□□□□□ -1.45
HMGXB3-201ENST00000502717 KRTAP12-4P60329 112 aa5.92□□□□□ -1.46
HMGXB3-201ENST00000502717 KRTAP9-2Q9BYQ4 174 aa5.85□□□□□ -1.47
HMGXB3-201ENST00000502717 KRTAP4-8A0A0G2JLE6 195 aa5.83□□□□□ -1.48
HMGXB3-201ENST00000502717 KRTAP4-8Q9BYQ9 185 aa5.83□□□□□ -1.48
HMGXB3-201ENST00000502717 MT1GP13640 62 aa5.8□□□□□ -1.48
HMGXB3-201ENST00000502717 FAT4Q6V0I7 4981 aa5.71□□□□□ -1.5
HMGXB3-201ENST00000502717 KRTAP9-6A0A140TA67 174 aa5.71□□□□□ -1.5
HMGXB3-201ENST00000502717 RNF213Q63HN8 5207 aa5.71□□□□□ -1.5
HMGXB3-201ENST00000502717 LCE3BQ5TA77 95 aa5.68□□□□□ -1.5
HMGXB3-201ENST00000502717 KRTAP4-7Q9BYR0 210 aa5.65□□□□□ -1.51
HMGXB3-201ENST00000502717 MT1LQ93083 61 aa5.64□□□□□ -1.51
HMGXB3-201ENST00000502717 HMCN2Q8NDA2 5059 aa5.64□□□□□ -1.51
HMGXB3-201ENST00000502717 LCE2DQ5TA82 110 aaPredicted RBP5.6□□□□□ -1.51
HMGXB3-201ENST00000502717 LCE2AQ5TA79 106 aaPredicted RBP5.6□□□□□ -1.51
HMGXB3-201ENST00000502717 MT1EP04732 61 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms