RNA–Protein interactions for RNA: ENST00000502717.5

HMGXB3-201, Transcript of HMG-box containing 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGXB3, Length 4,974 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3-201ENST00000502717 NISCHQ9Y2I1 1504 aa30.18■■■□□ 2.42
HMGXB3-201ENST00000502717 DCAF8L2P0C7V8 631 aa29.18■■■□□ 2.26
HMGXB3-201ENST00000502717 SUPT5HO00267 1087 aaKnown RBP28.23■■■□□ 2.11
HMGXB3-201ENST00000502717 SHROOM4Q9ULL8 1493 aa27.7■■■□□ 2.03
HMGXB3-201ENST00000502717 PCGF6Q9BYE7 350 aa27.39■■□□□ 1.98
HMGXB3-201ENST00000502717 PELP1Q8IZL8 1130 aaKnown RBP27.38■■□□□ 1.97
HMGXB3-201ENST00000502717 ZEB1P37275 1124 aaPredicted RBP27.01■■□□□ 1.91
HMGXB3-201ENST00000502717 HRCP23327 699 aa26.95■■□□□ 1.91
HMGXB3-201ENST00000502717 MYT1Q01538 1121 aa26.85■■□□□ 1.89
HMGXB3-201ENST00000502717 CENPBP07199 599 aaPredicted RBP26.72■■□□□ 1.87
HMGXB3-201ENST00000502717 EHMT2Q96KQ7 1210 aa26.67■■□□□ 1.86
HMGXB3-201ENST00000502717 FAM9AQ8IZU1 332 aaPredicted RBP26.4■■□□□ 1.82
HMGXB3-201ENST00000502717 TRIM26Q12899 539 aaPredicted RBP26.4■■□□□ 1.82
HMGXB3-201ENST00000502717 CCER1Q8TC90 406 aaPredicted RBP26.31■■□□□ 1.8
HMGXB3-201ENST00000502717 TRIM41Q8WV44 630 aa26.2■■□□□ 1.78
HMGXB3-201ENST00000502717 CHIC1Q5VXU3 224 aa26.18■■□□□ 1.78
HMGXB3-201ENST00000502717 PPARGC1BQ86YN6 1023 aaKnown RBP26.17■■□□□ 1.78
HMGXB3-201ENST00000502717 APLP2Q06481 763 aa26.14■■□□□ 1.78
HMGXB3-201ENST00000502717 TTBK1Q5TCY1 1321 aaPredicted RBP25.98■■□□□ 1.75
HMGXB3-201ENST00000502717 LOC105371045A0A1W2PR82 267 aa25.87■■□□□ 1.73
HMGXB3-201ENST00000502717 YTHDC1Q96MU7 727 aaKnown RBP25.83■■□□□ 1.73
HMGXB3-201ENST00000502717 ERICH6Q7L0X2 663 aa25.71■■□□□ 1.71
HMGXB3-201ENST00000502717 NEFLP07196 543 aa25.5■■□□□ 1.67
HMGXB3-201ENST00000502717 UBTFP17480 764 aaKnown RBP25.48■■□□□ 1.67
HMGXB3-201ENST00000502717 DIEXFQ68CQ4 756 aaKnown RBP25.47■■□□□ 1.67
HMGXB3-201ENST00000502717 GTF3C3Q9Y5Q9 886 aa25.34■■□□□ 1.65
HMGXB3-201ENST00000502717 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.31■■□□□ 1.64
HMGXB3-201ENST00000502717 ABCC9O60706 1549 aa25.29■■□□□ 1.64
HMGXB3-201ENST00000502717 ACIN1Q9UKV3 1341 aaKnown RBP25.25■■□□□ 1.63
HMGXB3-201ENST00000502717 RANGAP1P46060 587 aaPredicted RBP25.22■■□□□ 1.63
HMGXB3-201ENST00000502717 DCAF1Q9Y4B6 1507 aa25.18■■□□□ 1.62
HMGXB3-201ENST00000502717 ZCCHC6Q5VYS8 1495 aaKnown RBP25.14■■□□□ 1.61
HMGXB3-201ENST00000502717 CCDC180Q9P1Z9 1646 aa25.12■■□□□ 1.61
HMGXB3-201ENST00000502717 ATP1B4Q9UN42 357 aaPredicted RBP25.04■■□□□ 1.6
HMGXB3-201ENST00000502717 HNRNPUL2Q1KMD3 747 aaKnown RBP24.98■■□□□ 1.59
HMGXB3-201ENST00000502717 SCAF1Q9H7N4 1312 aaKnown RBP24.92■■□□□ 1.58
HMGXB3-201ENST00000502717 ZNF316A6NFI3 1004 aaPredicted RBP24.9■■□□□ 1.58
HMGXB3-201ENST00000502717 PABPN1Q86U42 306 aaKnown RBP eCLIP24.77■■□□□ 1.562e-8■■■■□ 22.7
HMGXB3-201ENST00000502717 NEUROD1Q13562 356 aa24.73■■□□□ 1.55
HMGXB3-201ENST00000502717 MYO15BQ96JP2 1530 aa24.68■■□□□ 1.54
HMGXB3-201ENST00000502717 CLSPNQ9HAW4 1339 aa24.62■■□□□ 1.53
HMGXB3-201ENST00000502717 MYT1LQ9UL68 1186 aa24.62■■□□□ 1.53
HMGXB3-201ENST00000502717 ITGAEP38570 1179 aa24.6■■□□□ 1.53
HMGXB3-201ENST00000502717 SCRIBQ14160 1630 aa24.55■■□□□ 1.52
HMGXB3-201ENST00000502717 BCANQ96GW7 911 aa24.47■■□□□ 1.51
HMGXB3-201ENST00000502717 RTL5Q5HYW3 569 aaPredicted RBP24.42■■□□□ 1.5
HMGXB3-201ENST00000502717 DAXXQ9UER7 740 aaPredicted RBP24.35■■□□□ 1.49
HMGXB3-201ENST00000502717 CDK11AQ9UQ88 783 aaPredicted RBP24.33■■□□□ 1.48
HMGXB3-201ENST00000502717 ANP32CO43423 234 aa24.25■■□□□ 1.47
HMGXB3-201ENST00000502717 CSRNP3Q8WYN3 585 aa24.18■■□□□ 1.46
HMGXB3-201ENST00000502717 MIER1Q8N108 512 aa24.14■■□□□ 1.45
HMGXB3-201ENST00000502717 RB1CC1Q8TDY2 1594 aa24.12■■□□□ 1.45
HMGXB3-201ENST00000502717 NACADO15069 1562 aa24.12■■□□□ 1.45
HMGXB3-201ENST00000502717 FKBP8Q14318 412 aa24.08■■□□□ 1.45
HMGXB3-201ENST00000502717 POLR3GLQ9BT43 218 aa24.06■■□□□ 1.44
HMGXB3-201ENST00000502717 FAM50AQ14320 339 aaKnown RBP24.05■■□□□ 1.44
HMGXB3-201ENST00000502717 RSF1Q96T23 1441 aaPredicted RBP24.03■■□□□ 1.44
HMGXB3-201ENST00000502717 FBLN2P98095 1184 aa23.94■■□□□ 1.42
HMGXB3-201ENST00000502717 ANP32EQ9BTT0 268 aa23.94■■□□□ 1.42
HMGXB3-201ENST00000502717 CNGB1Q14028 1251 aaPredicted RBP23.91■■□□□ 1.42
HMGXB3-201ENST00000502717 ANP32AP39687 249 aaKnown RBP23.84■■□□□ 1.41
HMGXB3-201ENST00000502717 DDX10Q13206 875 aaKnown RBP23.76■■□□□ 1.39
HMGXB3-201ENST00000502717 TRIM52Q96A61 297 aa23.73■■□□□ 1.39
HMGXB3-201ENST00000502717 HNRNPUQ00839 825 aaKnown RBP eCLIP23.67■■□□□ 1.38
HMGXB3-201ENST00000502717 CEP162Q5TB80 1403 aa23.65■■□□□ 1.38
HMGXB3-201ENST00000502717 SUPT16HQ9Y5B9 1047 aaKnown RBP23.64■■□□□ 1.38
HMGXB3-201ENST00000502717 BAZ1AQ9NRL2 1556 aaPredicted RBP23.62■■□□□ 1.37
HMGXB3-201ENST00000502717 EEA1Q15075 1411 aa23.57■■□□□ 1.36
HMGXB3-201ENST00000502717 CECR2Q9BXF3 1484 aa23.57■■□□□ 1.36
HMGXB3-201ENST00000502717 TONSLQ96HA7 1378 aa23.56■■□□□ 1.36
HMGXB3-201ENST00000502717 CLIP1P30622 1438 aa23.53■■□□□ 1.36
HMGXB3-201ENST00000502717 TNIKQ9UKE5 1360 aa23.52■■□□□ 1.36
HMGXB3-201ENST00000502717 NPM1P06748 294 aaKnown RBP eCLIP23.5■■□□□ 1.35
HMGXB3-201ENST00000502717 P3H3Q8IVL6 736 aa23.49■■□□□ 1.35
HMGXB3-201ENST00000502717 BCL11AQ9H165 835 aa23.49■■□□□ 1.35
HMGXB3-201ENST00000502717 ZBTB47Q9UFB7 747 aaPredicted RBP23.48■■□□□ 1.35
HMGXB3-201ENST00000502717 NPM2Q86SE8 214 aaKnown RBP23.47■■□□□ 1.35
HMGXB3-201ENST00000502717 GOLGA3Q08378 1498 aa23.46■■□□□ 1.35
HMGXB3-201ENST00000502717 NBR1Q14596 966 aa23.46■■□□□ 1.35
HMGXB3-201ENST00000502717 BAZ1BQ9UIG0 1483 aaKnown RBP23.46■■□□□ 1.35
HMGXB3-201ENST00000502717 SLC4A1APQ9BWU0 796 aaKnown RBP23.42■■□□□ 1.34
HMGXB3-201ENST00000502717 WRNQ14191 1432 aaPredicted RBP eCLIP23.42■■□□□ 1.34
HMGXB3-201ENST00000502717 ESF1Q9H501 851 aaKnown RBP23.4■■□□□ 1.34
HMGXB3-201ENST00000502717 EIF5BO60841 1220 aaKnown RBP23.39■■□□□ 1.34
HMGXB3-201ENST00000502717 FAM9BQ8IZU0 186 aa23.39■■□□□ 1.34
HMGXB3-201ENST00000502717 CCDC136Q96JN2 1154 aa23.39■■□□□ 1.33
HMGXB3-201ENST00000502717 ZNF326Q5BKZ1 582 aaKnown RBP23.38■■□□□ 1.33
HMGXB3-201ENST00000502717 MROH2BQ7Z745 1585 aa23.34■■□□□ 1.33
HMGXB3-201ENST00000502717 IRX6P78412 446 aaPredicted RBP23.34■■□□□ 1.33
HMGXB3-201ENST00000502717 TSHZ2Q9NRE2 1034 aa23.26■■□□□ 1.31
HMGXB3-201ENST00000502717 MRS2Q9HD23 443 aa23.26■■□□□ 1.31
HMGXB3-201ENST00000502717 RBM19Q9Y4C8 960 aaKnown RBP23.24■■□□□ 1.31
HMGXB3-201ENST00000502717 HIRIP3Q9BW71 556 aaPredicted RBP23.22■■□□□ 1.31
HMGXB3-201ENST00000502717 CEP164Q9UPV0 1460 aa23.2■■□□□ 1.3
HMGXB3-201ENST00000502717 GLIPR1L2Q4G1C9 344 aa23.19■■□□□ 1.3
HMGXB3-201ENST00000502717 PPP4R2Q9NY27 417 aa23.17■■□□□ 1.3
HMGXB3-201ENST00000502717 ARID3CA6NKF2 412 aa23.16■■□□□ 1.3
HMGXB3-201ENST00000502717 KIF27Q86VH2 1401 aa23.13■■□□□ 1.29
HMGXB3-201ENST00000502717 CCDC88BA6NC98 1476 aa23.12■■□□□ 1.29
HMGXB3-201ENST00000502717 CANXP27824 592 aaKnown RBP23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms