RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 RBM12B-AS1Q9P1G2 102 aa4.43□□□□□ -1.7
SF3A1-210ENST00000498259 SPTSSBQ8NFR3 76 aa4.42□□□□□ -1.7
SF3A1-210ENST00000498259 KRTAP4-12Q9BQ66 201 aa4.42□□□□□ -1.7
SF3A1-210ENST00000498259 SMIM26A0A096LP01 95 aa4.41□□□□□ -1.7
SF3A1-210ENST00000498259 C4orf26Q17RF5 130 aa4.41□□□□□ -1.7
SF3A1-210ENST00000498259 COX6B2Q6YFQ2 88 aa4.41□□□□□ -1.7
SF3A1-210ENST00000498259 COA5Q86WW8 74 aa4.4□□□□□ -1.71
SF3A1-210ENST00000498259 V9GYY9 64 aa4.4□□□□□ -1.71
SF3A1-210ENST00000498259 PCLOQ9Y6V0 5065 aa4.39□□□□□ -1.71
SF3A1-210ENST00000498259 KRTAP4-7Q9BYR0 210 aa4.37□□□□□ -1.71
SF3A1-210ENST00000498259 H1FX-AS1Q4G0G2 97 aa4.33□□□□□ -1.72
SF3A1-210ENST00000498259 SEC61GP60059 68 aa4.3□□□□□ -1.72
SF3A1-210ENST00000498259 Q1T7F1 81 aa4.3□□□□□ -1.72
SF3A1-210ENST00000498259 MPLKIPQ8TAP9 179 aa4.3□□□□□ -1.72
SF3A1-210ENST00000498259 PRR15LQ9BU68 103 aa4.3□□□□□ -1.72
SF3A1-210ENST00000498259 S4R3F8 94 aa4.29□□□□□ -1.72
SF3A1-210ENST00000498259 LCE1DQ5T752 114 aa4.28□□□□□ -1.72
SF3A1-210ENST00000498259 KRTAP3-1Q9BYR8 98 aa4.28□□□□□ -1.72
SF3A1-210ENST00000498259 LINC01558Q9Y6Z2 57 aa4.25□□□□□ -1.73
SF3A1-210ENST00000498259 LPAP08519 4548 aa4.24□□□□□ -1.73
SF3A1-210ENST00000498259 A0A1B0GU69 56 aa4.24□□□□□ -1.73
SF3A1-210ENST00000498259 CSAG1Q6PB30 78 aa4.24□□□□□ -1.73
SF3A1-210ENST00000498259 LRP2P98164 4655 aa4.24□□□□□ -1.73
SF3A1-210ENST00000498259 HERC1Q15751 4861 aa4.21□□□□□ -1.73
SF3A1-210ENST00000498259 LCA10Q71F78 164 aa4.21□□□□□ -1.74
SF3A1-210ENST00000498259 KRTAP19-1Q8IUB9 90 aa4.21□□□□□ -1.74
SF3A1-210ENST00000498259 HMCN2Q8NDA2 5059 aa4.19□□□□□ -1.74
SF3A1-210ENST00000498259 KRTAP4-1Q9BYQ7 146 aa4.18□□□□□ -1.74
SF3A1-210ENST00000498259 KRTAP4-9Q9BYQ8 210 aa4.18□□□□□ -1.74
SF3A1-210ENST00000498259 PSPHP1O15172 72 aa4.17□□□□□ -1.74
SF3A1-210ENST00000498259 KRTAP4-2Q9BYR5 136 aa4.17□□□□□ -1.74
SF3A1-210ENST00000498259 MUC17Q685J3 4493 aa4.14□□□□□ -1.75
SF3A1-210ENST00000498259 H0YAA0 97 aa4.13□□□□□ -1.75
SF3A1-210ENST00000498259 UQCR11O14957 56 aa4.13□□□□□ -1.75
SF3A1-210ENST00000498259 A6NED7 52 aa4.12□□□□□ -1.75
SF3A1-210ENST00000498259 Q5VV11 94 aa4.12□□□□□ -1.75
SF3A1-210ENST00000498259 A0A1B0GU33 70 aa4.09□□□□□ -1.75
SF3A1-210ENST00000498259 KRTAP5-3Q6L8H2 238 aa4.09□□□□□ -1.75
SF3A1-210ENST00000498259 KRTAP19-2Q3LHN2 52 aa4.08□□□□□ -1.76
SF3A1-210ENST00000498259 M0R2T5 61 aa4.07□□□□□ -1.76
SF3A1-210ENST00000498259 ADM2Q7Z4H4 148 aa4.07□□□□□ -1.76
SF3A1-210ENST00000498259 KRTAP9-8Q9BYQ0 159 aa4.07□□□□□ -1.76
SF3A1-210ENST00000498259 MIR22HGQ0VDD5 57 aa4.04□□□□□ -1.76
SF3A1-210ENST00000498259 BRK1Q8WUW1 75 aa4.04□□□□□ -1.76
SF3A1-210ENST00000498259 M0QZ58 72 aa4.03□□□□□ -1.76
SF3A1-210ENST00000498259 CDC42SE1Q9NRR8 79 aa4.03□□□□□ -1.76
SF3A1-210ENST00000498259 MUC2Q02817 5179 aa4.02□□□□□ -1.77
SF3A1-210ENST00000498259 SPATA8Q6RVD6 105 aa4.01□□□□□ -1.77
SF3A1-210ENST00000498259 CRIPTQ9P021 101 aa4.01□□□□□ -1.77
SF3A1-210ENST00000498259 KRTAP10-6P60371 365 aaPredicted RBP4□□□□□ -1.77
SF3A1-210ENST00000498259 UBR4Q5T4S7 5183 aa4□□□□□ -1.77
SF3A1-210ENST00000498259 K7ERS5 55 aa3.99□□□□□ -1.77
SF3A1-210ENST00000498259 R4GN34 69 aa3.99□□□□□ -1.77
SF3A1-210ENST00000498259 RNF213Q63HN8 5207 aa3.98□□□□□ -1.77
SF3A1-210ENST00000498259 MT1HP80294 61 aa3.98□□□□□ -1.77
SF3A1-210ENST00000498259 PRO0628Q9UI54 55 aa3.98□□□□□ -1.77
SF3A1-210ENST00000498259 FLGP20930 4061 aaPredicted RBP3.97□□□□□ -1.77
SF3A1-210ENST00000498259 P0C880 135 aa3.97□□□□□ -1.77
SF3A1-210ENST00000498259 KRTAP4-11Q9BYQ6 195 aa3.97□□□□□ -1.77
SF3A1-210ENST00000498259 KRTAP19-4Q3LI73 84 aa3.88□□□□□ -1.79
SF3A1-210ENST00000498259 KRTAP10-10P60014 251 aa3.87□□□□□ -1.79
SF3A1-210ENST00000498259 A0A0D9SG42 100 aa3.86□□□□□ -1.79
SF3A1-210ENST00000498259 PMAIP1Q13794 54 aa3.86□□□□□ -1.79
SF3A1-210ENST00000498259 A6NN06 94 aa3.85□□□□□ -1.79
SF3A1-210ENST00000498259 LINC01554Q52M75 96 aa3.85□□□□□ -1.79
SF3A1-210ENST00000498259 A8MU10 97 aa3.84□□□□□ -1.79
SF3A1-210ENST00000498259 KRTAP13-4Q3LI77 160 aa3.84□□□□□ -1.79
SF3A1-210ENST00000498259 FAT4Q6V0I7 4981 aa3.83□□□□□ -1.8
SF3A1-210ENST00000498259 SPINT4Q6UDR6 99 aa3.82□□□□□ -1.8
SF3A1-210ENST00000498259 MT2AP02795 61 aa3.81□□□□□ -1.8
SF3A1-210ENST00000498259 SPRR2GQ9BYE4 73 aa3.8□□□□□ -1.8
SF3A1-210ENST00000498259 LCE4AQ5TA78 99 aa3.79□□□□□ -1.8
SF3A1-210ENST00000498259 PLAC4Q8WY50 150 aa3.78□□□□□ -1.8
SF3A1-210ENST00000498259 MT1FP04733 61 aa3.77□□□□□ -1.81
SF3A1-210ENST00000498259 KRTAP12-1P59990 96 aa3.77□□□□□ -1.81
SF3A1-210ENST00000498259 KRTAP9-7A8MTY7 169 aa3.75□□□□□ -1.81
SF3A1-210ENST00000498259 CAMK2N1Q7Z7J9 78 aa3.75□□□□□ -1.81
SF3A1-210ENST00000498259 KRTAP12-2P59991 146 aa3.74□□□□□ -1.81
SF3A1-210ENST00000498259 ROMO1P60602 79 aa3.7□□□□□ -1.82
SF3A1-210ENST00000498259 KRTAP9-3Q9BYQ3 159 aa3.69□□□□□ -1.82
SF3A1-210ENST00000498259 KRTAP19-8Q3LI54 63 aa3.68□□□□□ -1.82
SF3A1-210ENST00000498259 KTN1-AS1Q86SY8 53 aa3.68□□□□□ -1.82
SF3A1-210ENST00000498259 KRTAP23-1A1A580 65 aa3.67□□□□□ -1.82
SF3A1-210ENST00000498259 LCE5AQ5TCM9 118 aa3.64□□□□□ -1.83
SF3A1-210ENST00000498259 PRO2289Q9P1D8 64 aa3.63□□□□□ -1.83
SF3A1-210ENST00000498259 KRTAP25-1Q3LHN0 102 aa3.59□□□□□ -1.83
SF3A1-210ENST00000498259 SVIPQ8NHG7 77 aa3.58□□□□□ -1.84
SF3A1-210ENST00000498259 TNP1P09430 55 aa3.57□□□□□ -1.84
SF3A1-210ENST00000498259 MT1BP07438 61 aa3.56□□□□□ -1.84
SF3A1-210ENST00000498259 C10orf95Q9H7T3 257 aa3.54□□□□□ -1.84
SF3A1-210ENST00000498259 PP632Q6XCG6 107 aa3.52□□□□□ -1.85
SF3A1-210ENST00000498259 PRAC1Q96KF2 57 aa3.48□□□□□ -1.85
SF3A1-210ENST00000498259 KRTAP10-5P60370 271 aa3.47□□□□□ -1.85
SF3A1-210ENST00000498259 MT1XP80297 61 aa3.47□□□□□ -1.85
SF3A1-210ENST00000498259 KRTAP19-6Q3LI70 58 aa3.41□□□□□ -1.86
SF3A1-210ENST00000498259 KRTAP15-1Q3LI76 137 aa3.38□□□□□ -1.87
SF3A1-210ENST00000498259 KRTAP10-12P60413 245 aa3.37□□□□□ -1.87
SF3A1-210ENST00000498259 USH2AO75445 5202 aa3.37□□□□□ -1.87
SF3A1-210ENST00000498259 KRTAP10-7P60409 375 aaPredicted RBP3.3□□□□□ -1.88
SF3A1-210ENST00000498259 LCE3AQ5TA76 89 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms