RNA–Protein interactions for RNA: ENST00000497597.5

TRAPPC12-223, Transcript of trafficking protein particle complex 12, human

TSL 2

Gene TRAPPC12, Length 3,401 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRAPPC12-223	ENST00000497597	FAT1	Q14517	4588 aa		5.48	□□□□□ -1.53
TRAPPC12-223	ENST00000497597	KRTAP12-2	P59991	146 aa		5.48	□□□□□ -1.53
TRAPPC12-223	ENST00000497597	KRTAP10-6	P60371	365 aa	Predicted RBP	5.48	□□□□□ -1.53
TRAPPC12-223	ENST00000497597	SACS	Q9NZJ4	4579 aa		5.45	□□□□□ -1.54
TRAPPC12-223	ENST00000497597	HYDIN	Q4G0P3	5121 aa		5.45	□□□□□ -1.54
TRAPPC12-223	ENST00000497597	LUZP6	Q538Z0	58 aa		5.45	□□□□□ -1.54
TRAPPC12-223	ENST00000497597	PKHD1	P08F94	4074 aa		5.43	□□□□□ -1.54
TRAPPC12-223	ENST00000497597	RYR2	Q92736	4967 aa		5.41	□□□□□ -1.54
TRAPPC12-223	ENST00000497597	KRTAP10-8	P60410	259 aa		5.38	□□□□□ -1.55
TRAPPC12-223	ENST00000497597	KMT2C	Q8NEZ4	4911 aa	Known RBP	5.38	□□□□□ -1.55
TRAPPC12-223	ENST00000497597	KRTAP3-2	Q9BYR7	98 aa		5.38	□□□□□ -1.55
TRAPPC12-223	ENST00000497597	KRTAP3-3	Q9BYR6	98 aa		5.36	□□□□□ -1.55
TRAPPC12-223	ENST00000497597	RYR3	Q15413	4870 aa		5.36	□□□□□ -1.55
TRAPPC12-223	ENST00000497597	APOB	P04114	4563 aa	Known RBP	5.35	□□□□□ -1.55
TRAPPC12-223	ENST00000497597	KRTAP12-1	P59990	96 aa		5.35	□□□□□ -1.55
TRAPPC12-223	ENST00000497597		M0QZ58	72 aa		5.33	□□□□□ -1.56
TRAPPC12-223	ENST00000497597	RPS29	P62273	56 aa	Known RBP	5.33	□□□□□ -1.56
TRAPPC12-223	ENST00000497597	DYNC1H1	Q14204	4646 aa	Known RBP	5.32	□□□□□ -1.56
TRAPPC12-223	ENST00000497597	HSPG2	P98160	4391 aa		5.32	□□□□□ -1.56
TRAPPC12-223	ENST00000497597	LRP1	Q07954	4544 aa	Known RBP	5.3	□□□□□ -1.56
TRAPPC12-223	ENST00000497597	PKD1	P98161	4303 aa		5.3	□□□□□ -1.56
TRAPPC12-223	ENST00000497597	PLAC4	Q8WY50	150 aa		5.29	□□□□□ -1.56
TRAPPC12-223	ENST00000497597		R4GN34	69 aa		5.29	□□□□□ -1.56
TRAPPC12-223	ENST00000497597	XP32	Q5T750	250 aa		5.23	□□□□□ -1.57
TRAPPC12-223	ENST00000497597	LPA	P08519	4548 aa		5.22	□□□□□ -1.57
TRAPPC12-223	ENST00000497597	FAT3	Q8TDW7	4589 aa		5.19	□□□□□ -1.58
TRAPPC12-223	ENST00000497597	CAMK2N1	Q7Z7J9	78 aa		5.19	□□□□□ -1.58
TRAPPC12-223	ENST00000497597		A0A1B0GVY2	172 aa		5.13	□□□□□ -1.59
TRAPPC12-223	ENST00000497597	EPPK1	P58107	5090 aa	Known RBP	5.12	□□□□□ -1.59
TRAPPC12-223	ENST00000497597	PKHD1L1	Q86WI1	4243 aa		5.1	□□□□□ -1.59
TRAPPC12-223	ENST00000497597	BIRC6	Q9NR09	4857 aa		5.08	□□□□□ -1.6
TRAPPC12-223	ENST00000497597	LRP2	P98164	4655 aa		5.07	□□□□□ -1.6
TRAPPC12-223	ENST00000497597		Q5VSD8	79 aa		5.07	□□□□□ -1.6
TRAPPC12-223	ENST00000497597	KRTAP10-4	P60372	401 aa	Predicted RBP	5.01	□□□□□ -1.61
TRAPPC12-223	ENST00000497597	HERC2	O95714	4834 aa		5	□□□□□ -1.61
TRAPPC12-223	ENST00000497597	LOR	P23490	312 aa	Predicted RBP	4.99	□□□□□ -1.61
TRAPPC12-223	ENST00000497597	RYR1	P21817	5038 aa		4.99	□□□□□ -1.61
TRAPPC12-223	ENST00000497597		J3QL48	77 aa		4.97	□□□□□ -1.61
TRAPPC12-223	ENST00000497597	TNXB	P22105	4242 aa		4.91	□□□□□ -1.62
TRAPPC12-223	ENST00000497597	KRTAP17-1	Q9BYP8	105 aa		4.89	□□□□□ -1.63
TRAPPC12-223	ENST00000497597	PP632	Q6XCG6	107 aa		4.86	□□□□□ -1.63
TRAPPC12-223	ENST00000497597	KIAA1109	Q2LD37	5005 aa		4.85	□□□□□ -1.63
TRAPPC12-223	ENST00000497597	TNP1	P09430	55 aa		4.82	□□□□□ -1.64
TRAPPC12-223	ENST00000497597	ABCA13	Q86UQ4	5058 aa		4.79	□□□□□ -1.64
TRAPPC12-223	ENST00000497597	MUC2	Q02817	5179 aa		4.76	□□□□□ -1.65
TRAPPC12-223	ENST00000497597	SEC61B	P60468	96 aa	Known RBP	4.74	□□□□□ -1.65
TRAPPC12-223	ENST00000497597	MT1HL1	P0DM35	61 aa		4.73	□□□□□ -1.65
TRAPPC12-223	ENST00000497597	PCLO	Q9Y6V0	5065 aa		4.73	□□□□□ -1.65
TRAPPC12-223	ENST00000497597	KRTAP4-5	Q9BYR2	181 aa		4.72	□□□□□ -1.65
TRAPPC12-223	ENST00000497597	KRTAP4-1	Q9BYQ7	146 aa		4.6	□□□□□ -1.67
TRAPPC12-223	ENST00000497597		M0R2T5	61 aa		4.57	□□□□□ -1.68
TRAPPC12-223	ENST00000497597	PRO2289	Q9P1D8	64 aa		4.54	□□□□□ -1.68
TRAPPC12-223	ENST00000497597	MUC17	Q685J3	4493 aa		4.51	□□□□□ -1.69
TRAPPC12-223	ENST00000497597	FAT4	Q6V0I7	4981 aa		4.5	□□□□□ -1.69
TRAPPC12-223	ENST00000497597	HMCN2	Q8NDA2	5059 aa		4.49	□□□□□ -1.69
TRAPPC12-223	ENST00000497597	LCE3A	Q5TA76	89 aa		4.48	□□□□□ -1.69
TRAPPC12-223	ENST00000497597	HERC1	Q15751	4861 aa		4.47	□□□□□ -1.69
TRAPPC12-223	ENST00000497597	SPRR5	A0A1B0GTR4	108 aa		4.44	□□□□□ -1.7
TRAPPC12-223	ENST00000497597	INE1	O15225	51 aa		4.36	□□□□□ -1.71
TRAPPC12-223	ENST00000497597	KRTAP10-10	P60014	251 aa		4.33	□□□□□ -1.72
TRAPPC12-223	ENST00000497597	FLG	P20930	4061 aa	Predicted RBP	4.32	□□□□□ -1.72
TRAPPC12-223	ENST00000497597	KRTAP23-1	A1A580	65 aa		4.31	□□□□□ -1.72
TRAPPC12-223	ENST00000497597	RNF213	Q63HN8	5207 aa		4.26	□□□□□ -1.73
TRAPPC12-223	ENST00000497597	KRTAP19-2	Q3LHN2	52 aa		4.25	□□□□□ -1.73
TRAPPC12-223	ENST00000497597	LCE2D	Q5TA82	110 aa	Predicted RBP	4.25	□□□□□ -1.73
TRAPPC12-223	ENST00000497597	KRTAP12-3	P60328	96 aa		4.24	□□□□□ -1.73
TRAPPC12-223	ENST00000497597	UBR4	Q5T4S7	5183 aa		4.22	□□□□□ -1.73
TRAPPC12-223	ENST00000497597	KMT2D	O14686	5537 aa		4.18	□□□□□ -1.74
TRAPPC12-223	ENST00000497597	KRTAP19-1	Q8IUB9	90 aa		4.18	□□□□□ -1.74
TRAPPC12-223	ENST00000497597	KRTAP10-12	P60413	245 aa		4.17	□□□□□ -1.74
TRAPPC12-223	ENST00000497597	KRTAP8-1	Q8IUC2	63 aa		4.12	□□□□□ -1.75
TRAPPC12-223	ENST00000497597	SPRR2G	Q9BYE4	73 aa		4.12	□□□□□ -1.75
TRAPPC12-223	ENST00000497597	MT1F	P04733	61 aa		4.06	□□□□□ -1.76
TRAPPC12-223	ENST00000497597	USH2A	O75445	5202 aa		4.04	□□□□□ -1.76
TRAPPC12-223	ENST00000497597	KRTAP10-7	P60409	375 aa	Predicted RBP	4.03	□□□□□ -1.76
TRAPPC12-223	ENST00000497597	LCE2A	Q5TA79	106 aa	Predicted RBP	4.02	□□□□□ -1.77
TRAPPC12-223	ENST00000497597	MT2A	P02795	61 aa		4.01	□□□□□ -1.77
TRAPPC12-223	ENST00000497597	LCE2C	Q5TA81	110 aa		4	□□□□□ -1.77
TRAPPC12-223	ENST00000497597	MT1X	P80297	61 aa		3.97	□□□□□ -1.77
TRAPPC12-223	ENST00000497597	KRTAP10-5	P60370	271 aa		3.97	□□□□□ -1.77
TRAPPC12-223	ENST00000497597	MT1H	P80294	61 aa		3.95	□□□□□ -1.78
TRAPPC12-223	ENST00000497597	KRTAP19-5	Q3LI72	72 aa		3.94	□□□□□ -1.78
TRAPPC12-223	ENST00000497597	LCE2B	O14633	110 aa		3.92	□□□□□ -1.78
TRAPPC12-223	ENST00000497597	MT1B	P07438	61 aa		3.91	□□□□□ -1.78
TRAPPC12-223	ENST00000497597	LCE3C	Q5T5A8	94 aa		3.9	□□□□□ -1.79
TRAPPC12-223	ENST00000497597	KRTAP4-7	Q9BYR0	210 aa		3.87	□□□□□ -1.79
TRAPPC12-223	ENST00000497597	KRTAP9-6	A8MVA2	160 aa		3.85	□□□□□ -1.79
TRAPPC12-223	ENST00000497597	KRTAP9-8	Q9BYQ0	159 aa		3.83	□□□□□ -1.8
TRAPPC12-223	ENST00000497597	KRTAP4-8	A0A0G2JLE6	195 aa		3.83	□□□□□ -1.8
TRAPPC12-223	ENST00000497597	KRTAP4-8	Q9BYQ9	185 aa		3.83	□□□□□ -1.8
TRAPPC12-223	ENST00000497597	KRTAP19-8	Q3LI54	63 aa		3.82	□□□□□ -1.8
TRAPPC12-223	ENST00000497597	CRCT1	Q9UGL9	99 aa		3.82	□□□□□ -1.8
TRAPPC12-223	ENST00000497597	OBSCN	Q5VST9	7968 aa		3.76	□□□□□ -1.81
TRAPPC12-223	ENST00000497597	SYNE1	Q8NF91	8797 aa	Known RBP	3.74	□□□□□ -1.81
TRAPPC12-223	ENST00000497597	DST	Q03001	7570 aa	Known RBP	3.73	□□□□□ -1.81
TRAPPC12-223	ENST00000497597	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	3.71	□□□□□ -1.82
TRAPPC12-223	ENST00000497597	FSIP2	Q5CZC0	6907 aa		3.71	□□□□□ -1.82
TRAPPC12-223	ENST00000497597	KRTAP9-3	Q9BYQ3	159 aa		3.64	□□□□□ -1.83
TRAPPC12-223	ENST00000497597	KRTAP9-2	Q9BYQ4	174 aa		3.64	□□□□□ -1.83
TRAPPC12-223	ENST00000497597	KRTAP12-4	P60329	112 aa		3.61	□□□□□ -1.83

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