RNA–Protein interactions for RNA: ENST00000473684.5

TMEM39A-206, Transcript of transmembrane protein 39A, humanhuman

TSL 5

Gene TMEM39A, Length 3,043 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-206ENST00000473684 FRAS1Q86XX4 4008 aa2.7□□□□□ -1.98
TMEM39A-206ENST00000473684 PKHD1P08F94 4074 aa2.7□□□□□ -1.98
TMEM39A-206ENST00000473684 DNAH10Q8IVF4 4471 aa2.7□□□□□ -1.98
TMEM39A-206ENST00000473684 MEGF8Q7Z7M0 2845 aa2.7□□□□□ -1.98
TMEM39A-206ENST00000473684 RYR3Q15413 4870 aa2.7□□□□□ -1.98
TMEM39A-206ENST00000473684 FLNBO75369 2602 aaKnown RBP2.69□□□□□ -1.98
TMEM39A-206ENST00000473684 FLNAP21333 2647 aaKnown RBP2.68□□□□□ -1.98
TMEM39A-206ENST00000473684 CCDC168Q8NDH2 2452 aa2.68□□□□□ -1.98
TMEM39A-206ENST00000473684 HUWE1Q7Z6Z7 4374 aaKnown RBP2.68□□□□□ -1.98
TMEM39A-206ENST00000473684 ZANQ9Y493 2812 aa2.68□□□□□ -1.98
TMEM39A-206ENST00000473684 NOTCH2Q04721 2471 aa2.67□□□□□ -1.98
TMEM39A-206ENST00000473684 VPS13DQ5THJ4 4388 aa2.67□□□□□ -1.98
TMEM39A-206ENST00000473684 LRP1BQ9NZR2 4599 aa2.67□□□□□ -1.98
TMEM39A-206ENST00000473684 CENPEQ02224 2701 aa2.66□□□□□ -1.98
TMEM39A-206ENST00000473684 A0A1B0GVY2 172 aa2.66□□□□□ -1.98
TMEM39A-206ENST00000473684 SPACA4Q8TDM5 124 aa2.66□□□□□ -1.98
TMEM39A-206ENST00000473684 PLAC4Q8WY50 150 aa2.66□□□□□ -1.98
TMEM39A-206ENST00000473684 S4R3F8 94 aa2.65□□□□□ -1.99
TMEM39A-206ENST00000473684 CUBNO60494 3623 aa2.64□□□□□ -1.99
TMEM39A-206ENST00000473684 SETD2Q9BYW2 2564 aaPredicted RBP2.64□□□□□ -1.99
TMEM39A-206ENST00000473684 PLECQ15149 4684 aaKnown RBP2.64□□□□□ -1.99
TMEM39A-206ENST00000473684 A0A0D9SG42 100 aa2.63□□□□□ -1.99
TMEM39A-206ENST00000473684 APLNQ9ULZ1 77 aa2.63□□□□□ -1.99
TMEM39A-206ENST00000473684 VWFP04275 2813 aa2.63□□□□□ -1.99
TMEM39A-206ENST00000473684 KRTAP10-12P60413 245 aa2.62□□□□□ -1.99
TMEM39A-206ENST00000473684 KRTAP10-6P60371 365 aaPredicted RBP2.62□□□□□ -1.99
TMEM39A-206ENST00000473684 KRTAP13-4Q3LI77 160 aa2.61□□□□□ -1.99
TMEM39A-206ENST00000473684 CSMD3Q7Z407 3707 aa2.6□□□□□ -1.99
TMEM39A-206ENST00000473684 PRO2289Q9P1D8 64 aa2.6□□□□□ -1.99
TMEM39A-206ENST00000473684 POLQO75417 2590 aa2.6□□□□□ -1.99
TMEM39A-206ENST00000473684 DNAH11Q96DT5 4516 aa2.6□□□□□ -1.99
TMEM39A-206ENST00000473684 KRTAP1-4P0C5Y4 121 aa2.58□□□□□ -2
TMEM39A-206ENST00000473684 NBEAL1Q6ZS30 2694 aa2.58□□□□□ -2
TMEM39A-206ENST00000473684 KRTAP12-2P59991 146 aa2.58□□□□□ -2
TMEM39A-206ENST00000473684 Q6ZRN7 208 aaPredicted RBP2.58□□□□□ -2
TMEM39A-206ENST00000473684 KMT2CQ8NEZ4 4911 aaKnown RBP2.57□□□□□ -2
TMEM39A-206ENST00000473684 PKD1L1Q8TDX9 2849 aa2.57□□□□□ -2
TMEM39A-206ENST00000473684 ACANP16112 2415 aa2.56□□□□□ -2
TMEM39A-206ENST00000473684 PKD1P98161 4303 aa2.56□□□□□ -2
TMEM39A-206ENST00000473684 KRTAP12-1P59990 96 aa2.56□□□□□ -2
TMEM39A-206ENST00000473684 DNAH8Q96JB1 4490 aa2.56□□□□□ -2
TMEM39A-206ENST00000473684 LCE3CQ5T5A8 94 aa2.55□□□□□ -2
TMEM39A-206ENST00000473684 TGP01266 2768 aa2.55□□□□□ -2
TMEM39A-206ENST00000473684 TNXBP22105 4242 aa2.55□□□□□ -2
TMEM39A-206ENST00000473684 UBE2DNLQ8IWF7 75 aa2.55□□□□□ -2
TMEM39A-206ENST00000473684 KRTAP13-2Q52LG2 175 aa2.54□□□□□ -2
TMEM39A-206ENST00000473684 FAT3Q8TDW7 4589 aa2.53□□□□□ -2
TMEM39A-206ENST00000473684 STARD9Q9P2P6 4700 aa2.53□□□□□ -2
TMEM39A-206ENST00000473684 COL6A5A8TX70 2615 aa2.52□□□□□ -2.01
TMEM39A-206ENST00000473684 COL7A1Q02388 2944 aa2.51□□□□□ -2.01
TMEM39A-206ENST00000473684 FAT1Q14517 4588 aa2.51□□□□□ -2.01
TMEM39A-206ENST00000473684 TENM3Q9P273 2699 aa2.51□□□□□ -2.01
TMEM39A-206ENST00000473684 EPPK1P58107 5090 aaKnown RBP2.51□□□□□ -2.01
TMEM39A-206ENST00000473684 DMBT1Q9UGM3 2413 aaPredicted RBP2.5□□□□□ -2.01
TMEM39A-206ENST00000473684 KIAA1109Q2LD37 5005 aa2.5□□□□□ -2.01
TMEM39A-206ENST00000473684 INE1O15225 51 aa2.5□□□□□ -2.01
TMEM39A-206ENST00000473684 RPS29P62273 56 aaKnown RBP2.5□□□□□ -2.01
TMEM39A-206ENST00000473684 PP632Q6XCG6 107 aa2.5□□□□□ -2.01
TMEM39A-206ENST00000473684 ATRQ13535 2644 aa2.49□□□□□ -2.01
TMEM39A-206ENST00000473684 M0QZ58 72 aa2.49□□□□□ -2.01
TMEM39A-206ENST00000473684 RYR1P21817 5038 aa2.48□□□□□ -2.01
TMEM39A-206ENST00000473684 PCLOQ9Y6V0 5065 aa2.48□□□□□ -2.01
TMEM39A-206ENST00000473684 TENM1Q9UKZ4 2725 aa2.48□□□□□ -2.01
TMEM39A-206ENST00000473684 STAB2Q8WWQ8 2551 aa2.48□□□□□ -2.01
TMEM39A-206ENST00000473684 R4GN34 69 aa2.47□□□□□ -2.01
TMEM39A-206ENST00000473684 MGAM2Q2M2H8 2515 aa2.47□□□□□ -2.01
TMEM39A-206ENST00000473684 NOTCH1P46531 2555 aa2.46□□□□□ -2.01
TMEM39A-206ENST00000473684 HYDINQ4G0P3 5121 aa2.46□□□□□ -2.02
TMEM39A-206ENST00000473684 KRTAP10-5P60370 271 aa2.46□□□□□ -2.02
TMEM39A-206ENST00000473684 HSPG2P98160 4391 aa2.45□□□□□ -2.02
TMEM39A-206ENST00000473684 SPRR5A0A1B0GTR4 108 aa2.44□□□□□ -2.02
TMEM39A-206ENST00000473684 APOBP04114 4563 aaKnown RBP2.44□□□□□ -2.02
TMEM39A-206ENST00000473684 KRTAP10-8P60410 259 aa2.44□□□□□ -2.02
TMEM39A-206ENST00000473684 LCE1EQ5T753 118 aa2.42□□□□□ -2.02
TMEM39A-206ENST00000473684 DNAH5Q8TE73 4624 aa2.42□□□□□ -2.02
TMEM39A-206ENST00000473684 STAB1Q9NY15 2570 aa2.41□□□□□ -2.02
TMEM39A-206ENST00000473684 ABCA13Q86UQ4 5058 aa2.41□□□□□ -2.02
TMEM39A-206ENST00000473684 C9orf92A6NGG3 77 aa2.4□□□□□ -2.02
TMEM39A-206ENST00000473684 MUC17Q685J3 4493 aa2.4□□□□□ -2.03
TMEM39A-206ENST00000473684 KRTAP10-7P60409 375 aaPredicted RBP2.39□□□□□ -2.03
TMEM39A-206ENST00000473684 KRTAP10-4P60372 401 aaPredicted RBP2.37□□□□□ -2.03
TMEM39A-206ENST00000473684 LCE3EQ5T5B0 92 aa2.34□□□□□ -2.04
TMEM39A-206ENST00000473684 MYCBP2O75592 4640 aa2.33□□□□□ -2.04
TMEM39A-206ENST00000473684 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.33□□□□□ -2.04
TMEM39A-206ENST00000473684 HERC1Q15751 4861 aa2.3□□□□□ -2.04
TMEM39A-206ENST00000473684 Q5VSD8 79 aa2.3□□□□□ -2.04
TMEM39A-206ENST00000473684 HMCN2Q8NDA2 5059 aa2.26□□□□□ -2.05
TMEM39A-206ENST00000473684 KRTAP5-11Q6L8G4 156 aa2.25□□□□□ -2.05
TMEM39A-206ENST00000473684 KRTAP5-9P26371 169 aa2.25□□□□□ -2.05
TMEM39A-206ENST00000473684 MT1HL1P0DM35 61 aa2.25□□□□□ -2.05
TMEM39A-206ENST00000473684 KRTAP9-6A8MVA2 160 aa2.24□□□□□ -2.05
TMEM39A-206ENST00000473684 KRTAP10-1P60331 282 aa2.24□□□□□ -2.05
TMEM39A-206ENST00000473684 TNP1P09430 55 aa2.22□□□□□ -2.05
TMEM39A-206ENST00000473684 HMCN1Q96RW7 5635 aa2.19□□□□□ -2.06
TMEM39A-206ENST00000473684 MUC5BQ9HC84 5762 aaPredicted RBP2.16□□□□□ -2.06
TMEM39A-206ENST00000473684 LRP1Q07954 4544 aaKnown RBP2.16□□□□□ -2.06
TMEM39A-206ENST00000473684 FAT4Q6V0I7 4981 aa2.12□□□□□ -2.07
TMEM39A-206ENST00000473684 KRTAP10-10P60014 251 aa2.07□□□□□ -2.08
TMEM39A-206ENST00000473684 GPR98Q8WXG9 6306 aa2.06□□□□□ -2.08
TMEM39A-206ENST00000473684 CRCT1Q9UGL9 99 aa2.05□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 115.7 ms