RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 KRTAP3-1Q9BYR8 98 aa5.63□□□□□ -1.51
CHD3-208ENST00000470531 HYDINQ4G0P3 5121 aa5.63□□□□□ -1.51
CHD3-208ENST00000470531 M0QZ58 72 aa5.56□□□□□ -1.52
CHD3-208ENST00000470531 R4GN34 69 aa5.56□□□□□ -1.52
CHD3-208ENST00000470531 PKHD1P08F94 4074 aa5.55□□□□□ -1.52
CHD3-208ENST00000470531 TPRXLQ17RH7 258 aa5.55□□□□□ -1.52
CHD3-208ENST00000470531 KRTAP10-8P60410 259 aa5.53□□□□□ -1.52
CHD3-208ENST00000470531 PKD1P98161 4303 aa5.52□□□□□ -1.53
CHD3-208ENST00000470531 FAT3Q8TDW7 4589 aa5.51□□□□□ -1.53
CHD3-208ENST00000470531 KRTAP15-1Q3LI76 137 aa5.5□□□□□ -1.53
CHD3-208ENST00000470531 CAMK2N1Q7Z7J9 78 aa5.5□□□□□ -1.53
CHD3-208ENST00000470531 XP32Q5T750 250 aa5.49□□□□□ -1.53
CHD3-208ENST00000470531 KRTAP13-4Q3LI77 160 aa5.49□□□□□ -1.53
CHD3-208ENST00000470531 RPS29P62273 56 aaKnown RBP5.46□□□□□ -1.54
CHD3-208ENST00000470531 LRP1Q07954 4544 aaKnown RBP5.43□□□□□ -1.54
CHD3-208ENST00000470531 DYNC1H1Q14204 4646 aaKnown RBP5.41□□□□□ -1.54
CHD3-208ENST00000470531 KRTAP12-2P59991 146 aa5.4□□□□□ -1.54
CHD3-208ENST00000470531 KRTAP10-6P60371 365 aaPredicted RBP5.38□□□□□ -1.55
CHD3-208ENST00000470531 SACSQ9NZJ4 4579 aa5.37□□□□□ -1.55
CHD3-208ENST00000470531 A0A1B0GVY2 172 aa5.34□□□□□ -1.56
CHD3-208ENST00000470531 PLAC4Q8WY50 150 aa5.33□□□□□ -1.56
CHD3-208ENST00000470531 KRTAP3-3Q9BYR6 98 aa5.33□□□□□ -1.56
CHD3-208ENST00000470531 HSPG2P98160 4391 aa5.31□□□□□ -1.56
CHD3-208ENST00000470531 M0R2T5 61 aa5.31□□□□□ -1.56
CHD3-208ENST00000470531 KRTAP3-2Q9BYR7 98 aa5.3□□□□□ -1.56
CHD3-208ENST00000470531 KIAA1109Q2LD37 5005 aa5.28□□□□□ -1.56
CHD3-208ENST00000470531 APOBP04114 4563 aaKnown RBP5.27□□□□□ -1.57
CHD3-208ENST00000470531 RYR1P21817 5038 aa5.24□□□□□ -1.57
CHD3-208ENST00000470531 KRTAP10-4P60372 401 aaPredicted RBP5.24□□□□□ -1.57
CHD3-208ENST00000470531 KRTAP12-1P59990 96 aa5.24□□□□□ -1.57
CHD3-208ENST00000470531 PKHD1L1Q86WI1 4243 aa5.22□□□□□ -1.57
CHD3-208ENST00000470531 LPAP08519 4548 aa5.21□□□□□ -1.57
CHD3-208ENST00000470531 LRP2P98164 4655 aa5.18□□□□□ -1.58
CHD3-208ENST00000470531 KMT2CQ8NEZ4 4911 aaKnown RBP5.18□□□□□ -1.58
CHD3-208ENST00000470531 KRTAP4-5Q9BYR2 181 aa5.16□□□□□ -1.58
CHD3-208ENST00000470531 RYR3Q15413 4870 aa5.11□□□□□ -1.59
CHD3-208ENST00000470531 MT1HL1P0DM35 61 aa5.1□□□□□ -1.59
CHD3-208ENST00000470531 LORP23490 312 aaPredicted RBP5.09□□□□□ -1.59
CHD3-208ENST00000470531 KRTAP17-1Q9BYP8 105 aa5.07□□□□□ -1.6
CHD3-208ENST00000470531 KRTAP23-1A1A580 65 aa5.06□□□□□ -1.6
CHD3-208ENST00000470531 TNXBP22105 4242 aa5.06□□□□□ -1.6
CHD3-208ENST00000470531 EPPK1P58107 5090 aaKnown RBP5□□□□□ -1.61
CHD3-208ENST00000470531 KRTAP21-3Q3LHN1 58 aa4.99□□□□□ -1.61
CHD3-208ENST00000470531 MUC2Q02817 5179 aa4.97□□□□□ -1.61
CHD3-208ENST00000470531 RYR2Q92736 4967 aa4.97□□□□□ -1.61
CHD3-208ENST00000470531 TNP1P09430 55 aa4.95□□□□□ -1.62
CHD3-208ENST00000470531 PRO2289Q9P1D8 64 aa4.91□□□□□ -1.62
CHD3-208ENST00000470531 ABCA13Q86UQ4 5058 aa4.89□□□□□ -1.63
CHD3-208ENST00000470531 KRTAP4-1Q9BYQ7 146 aa4.88□□□□□ -1.63
CHD3-208ENST00000470531 KRTAP10-10P60014 251 aa4.84□□□□□ -1.63
CHD3-208ENST00000470531 PP632Q6XCG6 107 aa4.79□□□□□ -1.64
CHD3-208ENST00000470531 HERC2O95714 4834 aa4.74□□□□□ -1.65
CHD3-208ENST00000470531 FAT4Q6V0I7 4981 aa4.72□□□□□ -1.65
CHD3-208ENST00000470531 RNF213Q63HN8 5207 aa4.71□□□□□ -1.66
CHD3-208ENST00000470531 INE1O15225 51 aa4.65□□□□□ -1.66
CHD3-208ENST00000470531 MUC17Q685J3 4493 aa4.63□□□□□ -1.67
CHD3-208ENST00000470531 PCLOQ9Y6V0 5065 aa4.61□□□□□ -1.67
CHD3-208ENST00000470531 HERC1Q15751 4861 aa4.6□□□□□ -1.67
CHD3-208ENST00000470531 LCE2CQ5TA81 110 aa4.55□□□□□ -1.68
CHD3-208ENST00000470531 LCE3AQ5TA76 89 aa4.54□□□□□ -1.68
CHD3-208ENST00000470531 FSIP2Q5CZC0 6907 aa4.5□□□□□ -1.69
CHD3-208ENST00000470531 LCE2DQ5TA82 110 aaPredicted RBP4.5□□□□□ -1.69
CHD3-208ENST00000470531 UBR4Q5T4S7 5183 aa4.46□□□□□ -1.69
CHD3-208ENST00000470531 HMCN2Q8NDA2 5059 aa4.46□□□□□ -1.7
CHD3-208ENST00000470531 KRTAP19-2Q3LHN2 52 aa4.44□□□□□ -1.7
CHD3-208ENST00000470531 FLGP20930 4061 aaPredicted RBP4.38□□□□□ -1.71
CHD3-208ENST00000470531 LCE2BO14633 110 aa4.38□□□□□ -1.71
CHD3-208ENST00000470531 OBSCNQ5VST9 7968 aa4.37□□□□□ -1.71
CHD3-208ENST00000470531 MT1FP04733 61 aa4.35□□□□□ -1.71
CHD3-208ENST00000470531 KRTAP10-12P60413 245 aa4.34□□□□□ -1.71
CHD3-208ENST00000470531 LCE2AQ5TA79 106 aaPredicted RBP4.34□□□□□ -1.71
CHD3-208ENST00000470531 KRTAP12-3P60328 96 aa4.33□□□□□ -1.72
CHD3-208ENST00000470531 SPRR5A0A1B0GTR4 108 aa4.33□□□□□ -1.72
CHD3-208ENST00000470531 MT1HP80294 61 aa4.32□□□□□ -1.72
CHD3-208ENST00000470531 KRTAP19-1Q8IUB9 90 aa4.31□□□□□ -1.72
CHD3-208ENST00000470531 MT2AP02795 61 aa4.31□□□□□ -1.72
CHD3-208ENST00000470531 USH2AO75445 5202 aa4.3□□□□□ -1.72
CHD3-208ENST00000470531 BIRC6Q9NR09 4857 aa4.28□□□□□ -1.72
CHD3-208ENST00000470531 CRCT1Q9UGL9 99 aa4.25□□□□□ -1.73
CHD3-208ENST00000470531 KMT2DO14686 5537 aa4.23□□□□□ -1.73
CHD3-208ENST00000470531 SPRR2GQ9BYE4 73 aa4.22□□□□□ -1.73
CHD3-208ENST00000470531 KRTAP10-7P60409 375 aaPredicted RBP4.19□□□□□ -1.74
CHD3-208ENST00000470531 DSTQ03001 7570 aaKnown RBP4.12□□□□□ -1.75
CHD3-208ENST00000470531 SYNE1Q8NF91 8797 aaKnown RBP4.12□□□□□ -1.75
CHD3-208ENST00000470531 KRTAP4-8A0A0G2JLE6 195 aa4.09□□□□□ -1.75
CHD3-208ENST00000470531 KRTAP4-8Q9BYQ9 185 aa4.09□□□□□ -1.75
CHD3-208ENST00000470531 KRTAP9-8Q9BYQ0 159 aa4.09□□□□□ -1.75
CHD3-208ENST00000470531 KRTAP19-5Q3LI72 72 aa4.08□□□□□ -1.76
CHD3-208ENST00000470531 MT1XP80297 61 aa4.08□□□□□ -1.76
CHD3-208ENST00000470531 KRTAP10-5P60370 271 aa4.07□□□□□ -1.76
CHD3-208ENST00000470531 MT1BP07438 61 aa4.06□□□□□ -1.76
CHD3-208ENST00000470531 KRTAP8-1Q8IUC2 63 aa4.06□□□□□ -1.76
CHD3-208ENST00000470531 FCGBPQ9Y6R7 5405 aaPredicted RBP4.02□□□□□ -1.77
CHD3-208ENST00000470531 KRTAP4-7Q9BYR0 210 aa4.01□□□□□ -1.77
CHD3-208ENST00000470531 KRTAP19-8Q3LI54 63 aa3.92□□□□□ -1.78
CHD3-208ENST00000470531 LCE3CQ5T5A8 94 aa3.91□□□□□ -1.78
CHD3-208ENST00000470531 KRTAP9-3Q9BYQ3 159 aa3.89□□□□□ -1.79
CHD3-208ENST00000470531 KRTAP9-6A8MVA2 160 aa3.78□□□□□ -1.8
CHD3-208ENST00000470531 MUC12Q9UKN1 5478 aa3.75□□□□□ -1.81
CHD3-208ENST00000470531 KRTAP4-3Q9BYR4 195 aa3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms