RNA–Protein interactions for RNA: ENST00000464362.5

HPS4-208, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 5

Gene HPS4, Length 4,277 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-208ENST00000464362 DNAH11Q96DT5 4516 aa4.67□□□□□ -1.66
HPS4-208ENST00000464362 SACSQ9NZJ4 4579 aa4.65□□□□□ -1.66
HPS4-208ENST00000464362 KRTAP3-1Q9BYR8 98 aa4.64□□□□□ -1.67
HPS4-208ENST00000464362 DNAH17Q9UFH2 4485 aa4.64□□□□□ -1.67
HPS4-208ENST00000464362 KMT2CQ8NEZ4 4911 aaKnown RBP4.63□□□□□ -1.67
HPS4-208ENST00000464362 PKHD1P08F94 4074 aa4.63□□□□□ -1.67
HPS4-208ENST00000464362 DNAH5Q8TE73 4624 aa4.62□□□□□ -1.67
HPS4-208ENST00000464362 DNAH8Q96JB1 4490 aa4.62□□□□□ -1.67
HPS4-208ENST00000464362 A0A1B0GVY2 172 aa4.6□□□□□ -1.67
HPS4-208ENST00000464362 ALMS1Q8TCU4 4167 aa4.6□□□□□ -1.67
HPS4-208ENST00000464362 KRTAP10-8P60410 259 aa4.58□□□□□ -1.68
HPS4-208ENST00000464362 PLAC4Q8WY50 150 aa4.58□□□□□ -1.68
HPS4-208ENST00000464362 RYR3Q15413 4870 aa4.54□□□□□ -1.68
HPS4-208ENST00000464362 KRTAP12-2P59991 146 aa4.53□□□□□ -1.68
HPS4-208ENST00000464362 RYR2Q92736 4967 aa4.53□□□□□ -1.68
HPS4-208ENST00000464362 KRTAP13-4Q3LI77 160 aa4.51□□□□□ -1.69
HPS4-208ENST00000464362 TPRXLQ17RH7 258 aa4.5□□□□□ -1.69
HPS4-208ENST00000464362 TNP1P09430 55 aa4.48□□□□□ -1.69
HPS4-208ENST00000464362 KRTAP10-6P60371 365 aaPredicted RBP4.46□□□□□ -1.7
HPS4-208ENST00000464362 LRP1BQ9NZR2 4599 aa4.45□□□□□ -1.7
HPS4-208ENST00000464362 VPS13BQ7Z7G8 4022 aa4.45□□□□□ -1.7
HPS4-208ENST00000464362 KRTAP12-1P59990 96 aa4.44□□□□□ -1.7
HPS4-208ENST00000464362 APOBP04114 4563 aaKnown RBP4.4□□□□□ -1.71
HPS4-208ENST00000464362 FAT1Q14517 4588 aa4.38□□□□□ -1.71
HPS4-208ENST00000464362 DYNC1H1Q14204 4646 aaKnown RBP4.36□□□□□ -1.71
HPS4-208ENST00000464362 KRTAP3-3Q9BYR6 98 aa4.36□□□□□ -1.71
HPS4-208ENST00000464362 KRTAP15-1Q3LI76 137 aa4.35□□□□□ -1.71
HPS4-208ENST00000464362 KRTAP10-4P60372 401 aaPredicted RBP4.34□□□□□ -1.71
HPS4-208ENST00000464362 KRTAP3-2Q9BYR7 98 aa4.34□□□□□ -1.72
HPS4-208ENST00000464362 EPPK1P58107 5090 aaKnown RBP4.34□□□□□ -1.72
HPS4-208ENST00000464362 PKHD1L1Q86WI1 4243 aa4.33□□□□□ -1.72
HPS4-208ENST00000464362 KRTAP10-10P60014 251 aa4.33□□□□□ -1.72
HPS4-208ENST00000464362 PP632Q6XCG6 107 aa4.33□□□□□ -1.72
HPS4-208ENST00000464362 HSPG2P98160 4391 aa4.31□□□□□ -1.72
HPS4-208ENST00000464362 MT1HL1P0DM35 61 aa4.31□□□□□ -1.72
HPS4-208ENST00000464362 MYCBP2O75592 4640 aa4.31□□□□□ -1.72
HPS4-208ENST00000464362 KRTAP4-5Q9BYR2 181 aa4.26□□□□□ -1.73
HPS4-208ENST00000464362 TNXBP22105 4242 aa4.22□□□□□ -1.73
HPS4-208ENST00000464362 RYR1P21817 5038 aa4.19□□□□□ -1.74
HPS4-208ENST00000464362 FAT3Q8TDW7 4589 aa4.19□□□□□ -1.74
HPS4-208ENST00000464362 KRTAP17-1Q9BYP8 105 aa4.19□□□□□ -1.74
HPS4-208ENST00000464362 LRP1Q07954 4544 aaKnown RBP4.18□□□□□ -1.74
HPS4-208ENST00000464362 KIAA1109Q2LD37 5005 aa4.17□□□□□ -1.74
HPS4-208ENST00000464362 LORP23490 312 aaPredicted RBP4.16□□□□□ -1.74
HPS4-208ENST00000464362 ABCA13Q86UQ4 5058 aa4.07□□□□□ -1.76
HPS4-208ENST00000464362 KRTAP23-1A1A580 65 aa4.07□□□□□ -1.76
HPS4-208ENST00000464362 PRO2289Q9P1D8 64 aa4.06□□□□□ -1.76
HPS4-208ENST00000464362 LCE2DQ5TA82 110 aaPredicted RBP4.06□□□□□ -1.76
HPS4-208ENST00000464362 HERC2O95714 4834 aa4.01□□□□□ -1.77
HPS4-208ENST00000464362 PCLOQ9Y6V0 5065 aa4□□□□□ -1.77
HPS4-208ENST00000464362 KRTAP4-1Q9BYQ7 146 aa3.99□□□□□ -1.77
HPS4-208ENST00000464362 INE1O15225 51 aa3.98□□□□□ -1.77
HPS4-208ENST00000464362 BIRC6Q9NR09 4857 aa3.98□□□□□ -1.77
HPS4-208ENST00000464362 LPAP08519 4548 aa3.95□□□□□ -1.78
HPS4-208ENST00000464362 LRP2P98164 4655 aa3.95□□□□□ -1.78
HPS4-208ENST00000464362 HERC1Q15751 4861 aa3.88□□□□□ -1.79
HPS4-208ENST00000464362 LCE3AQ5TA76 89 aa3.86□□□□□ -1.79
HPS4-208ENST00000464362 KRTAP10-12P60413 245 aa3.83□□□□□ -1.8
HPS4-208ENST00000464362 KRTAP12-3P60328 96 aa3.78□□□□□ -1.8
HPS4-208ENST00000464362 HMCN2Q8NDA2 5059 aa3.77□□□□□ -1.81
HPS4-208ENST00000464362 MUC2Q02817 5179 aa3.77□□□□□ -1.81
HPS4-208ENST00000464362 MUC17Q685J3 4493 aa3.76□□□□□ -1.81
HPS4-208ENST00000464362 CRCT1Q9UGL9 99 aa3.72□□□□□ -1.81
HPS4-208ENST00000464362 MT1HP80294 61 aa3.67□□□□□ -1.82
HPS4-208ENST00000464362 MT2AP02795 61 aa3.66□□□□□ -1.82
HPS4-208ENST00000464362 MT1FP04733 61 aa3.65□□□□□ -1.83
HPS4-208ENST00000464362 UBR4Q5T4S7 5183 aa3.64□□□□□ -1.83
HPS4-208ENST00000464362 FLGP20930 4061 aaPredicted RBP3.63□□□□□ -1.83
HPS4-208ENST00000464362 SPRR2GQ9BYE4 73 aa3.61□□□□□ -1.83
HPS4-208ENST00000464362 RNF213Q63HN8 5207 aa3.6□□□□□ -1.83
HPS4-208ENST00000464362 LCE2CQ5TA81 110 aa3.59□□□□□ -1.83
HPS4-208ENST00000464362 KRTAP19-1Q8IUB9 90 aa3.57□□□□□ -1.84
HPS4-208ENST00000464362 FAT4Q6V0I7 4981 aa3.56□□□□□ -1.84
HPS4-208ENST00000464362 LCE2BO14633 110 aa3.56□□□□□ -1.84
HPS4-208ENST00000464362 KRTAP19-2Q3LHN2 52 aa3.52□□□□□ -1.85
HPS4-208ENST00000464362 KRTAP8-1Q8IUC2 63 aa3.47□□□□□ -1.85
HPS4-208ENST00000464362 KRTAP10-7P60409 375 aaPredicted RBP3.47□□□□□ -1.85
HPS4-208ENST00000464362 KRTAP19-5Q3LI72 72 aa3.47□□□□□ -1.85
HPS4-208ENST00000464362 FSIP2Q5CZC0 6907 aa3.45□□□□□ -1.86
HPS4-208ENST00000464362 KRTAP10-5P60370 271 aa3.43□□□□□ -1.86
HPS4-208ENST00000464362 LCE2AQ5TA79 106 aaPredicted RBP3.4□□□□□ -1.86
HPS4-208ENST00000464362 SYNE1Q8NF91 8797 aaKnown RBP3.4□□□□□ -1.86
HPS4-208ENST00000464362 MT1XP80297 61 aa3.4□□□□□ -1.87
HPS4-208ENST00000464362 OBSCNQ5VST9 7968 aa3.39□□□□□ -1.87
HPS4-208ENST00000464362 KRTAP9-8Q9BYQ0 159 aa3.39□□□□□ -1.87
HPS4-208ENST00000464362 MT1BP07438 61 aa3.39□□□□□ -1.87
HPS4-208ENST00000464362 KRTAP19-8Q3LI54 63 aa3.36□□□□□ -1.87
HPS4-208ENST00000464362 KRTAP4-8A0A0G2JLE6 195 aa3.36□□□□□ -1.87
HPS4-208ENST00000464362 KRTAP4-8Q9BYQ9 185 aa3.36□□□□□ -1.87
HPS4-208ENST00000464362 LCE3CQ5T5A8 94 aa3.35□□□□□ -1.87
HPS4-208ENST00000464362 SPRR5A0A1B0GTR4 108 aa3.32□□□□□ -1.88
HPS4-208ENST00000464362 KRTAP9-3Q9BYQ3 159 aa3.26□□□□□ -1.89
HPS4-208ENST00000464362 SPRR2FQ96RM1 72 aa3.23□□□□□ -1.89
HPS4-208ENST00000464362 KRTAP4-7Q9BYR0 210 aa3.23□□□□□ -1.89
HPS4-208ENST00000464362 MT1GP13640 62 aa3.15□□□□□ -1.9
HPS4-208ENST00000464362 DSTQ03001 7570 aaKnown RBP3.12□□□□□ -1.91
HPS4-208ENST00000464362 USH2AO75445 5202 aa3.11□□□□□ -1.91
HPS4-208ENST00000464362 FCGBPQ9Y6R7 5405 aaPredicted RBP3.11□□□□□ -1.91
HPS4-208ENST00000464362 LCE3BQ5TA77 95 aa3.1□□□□□ -1.91
HPS4-208ENST00000464362 KRTAP12-4P60329 112 aa3.06□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms