RNA–Protein interactions for RNA: ENST00000438362.6

CSDE1-205, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-205ENST00000438362 KRTAP9-2Q9BYQ4 174 aa3.38□□□□□ -1.87
CSDE1-205ENST00000438362 A0A0A0MQY5 61 aa3.37□□□□□ -1.87
CSDE1-205ENST00000438362 TPRXLQ17RH7 258 aa3.37□□□□□ -1.87
CSDE1-205ENST00000438362 RYR3Q15413 4870 aa3.37□□□□□ -1.87
CSDE1-205ENST00000438362 DYNC2H1Q8NCM8 4307 aaKnown RBP3.36□□□□□ -1.87
CSDE1-205ENST00000438362 KRTAP9-6A0A140TA67 174 aa3.35□□□□□ -1.87
CSDE1-205ENST00000438362 KRTAP19-1Q8IUB9 90 aa3.34□□□□□ -1.88
CSDE1-205ENST00000438362 HECTD4Q9Y4D8 3996 aa3.33□□□□□ -1.88
CSDE1-205ENST00000438362 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.33□□□□□ -1.88
CSDE1-205ENST00000438362 KRTAP10-6P60371 365 aaPredicted RBP3.32□□□□□ -1.88
CSDE1-205ENST00000438362 DNAH9Q9NYC9 4486 aa3.32□□□□□ -1.88
CSDE1-205ENST00000438362 KRTAP12-2P59991 146 aa3.31□□□□□ -1.88
CSDE1-205ENST00000438362 PLAC4Q8WY50 150 aa3.31□□□□□ -1.88
CSDE1-205ENST00000438362 KRTAP13-4Q3LI77 160 aa3.3□□□□□ -1.88
CSDE1-205ENST00000438362 DNAH10Q8IVF4 4471 aa3.3□□□□□ -1.88
CSDE1-205ENST00000438362 KMT2CQ8NEZ4 4911 aaKnown RBP3.3□□□□□ -1.88
CSDE1-205ENST00000438362 PLECQ15149 4684 aaKnown RBP3.3□□□□□ -1.88
CSDE1-205ENST00000438362 KRTAP12-1P59990 96 aa3.29□□□□□ -1.88
CSDE1-205ENST00000438362 TNP1P09430 55 aa3.28□□□□□ -1.88
CSDE1-205ENST00000438362 PP632Q6XCG6 107 aa3.28□□□□□ -1.88
CSDE1-205ENST00000438362 FRAS1Q86XX4 4008 aa3.28□□□□□ -1.88
CSDE1-205ENST00000438362 KRTAP10-4P60372 401 aaPredicted RBP3.26□□□□□ -1.89
CSDE1-205ENST00000438362 DNAH6Q9C0G6 4158 aa3.24□□□□□ -1.89
CSDE1-205ENST00000438362 DNAH11Q96DT5 4516 aa3.23□□□□□ -1.89
CSDE1-205ENST00000438362 VPS13DQ5THJ4 4388 aa3.22□□□□□ -1.89
CSDE1-205ENST00000438362 DNAH17Q9UFH2 4485 aa3.21□□□□□ -1.9
CSDE1-205ENST00000438362 SACSQ9NZJ4 4579 aa3.2□□□□□ -1.9
CSDE1-205ENST00000438362 KRTAP9-9Q9BYP9 154 aa3.2□□□□□ -1.9
CSDE1-205ENST00000438362 KRTAP9-4Q9BYQ2 154 aa3.2□□□□□ -1.9
CSDE1-205ENST00000438362 RYR2Q92736 4967 aa3.2□□□□□ -1.9
CSDE1-205ENST00000438362 KRTAP4-8A0A0G2JLE6 195 aa3.2□□□□□ -1.9
CSDE1-205ENST00000438362 STARD9Q9P2P6 4700 aa3.19□□□□□ -1.9
CSDE1-205ENST00000438362 MT1HL1P0DM35 61 aa3.18□□□□□ -1.9
CSDE1-205ENST00000438362 LCE1DQ5T752 114 aa3.18□□□□□ -1.9
CSDE1-205ENST00000438362 DNAH5Q8TE73 4624 aa3.18□□□□□ -1.9
CSDE1-205ENST00000438362 DNAH8Q96JB1 4490 aa3.17□□□□□ -1.9
CSDE1-205ENST00000438362 EPPK1P58107 5090 aaKnown RBP3.15□□□□□ -1.91
CSDE1-205ENST00000438362 FAT2Q9NYQ8 4349 aa3.14□□□□□ -1.91
CSDE1-205ENST00000438362 DNAH2Q9P225 4427 aa3.14□□□□□ -1.91
CSDE1-205ENST00000438362 HYDINQ4G0P3 5121 aa3.14□□□□□ -1.91
CSDE1-205ENST00000438362 LRP1BQ9NZR2 4599 aa3.13□□□□□ -1.91
CSDE1-205ENST00000438362 ALMS1Q8TCU4 4167 aa3.12□□□□□ -1.91
CSDE1-205ENST00000438362 KRTAP15-1Q3LI76 137 aa3.11□□□□□ -1.91
CSDE1-205ENST00000438362 KMT2AQ03164 3969 aa3.09□□□□□ -1.91
CSDE1-205ENST00000438362 KRTAP4-7Q9BYR0 210 aa3.09□□□□□ -1.91
CSDE1-205ENST00000438362 PKD1P98161 4303 aa3.09□□□□□ -1.92
CSDE1-205ENST00000438362 PKHD1P08F94 4074 aa3.08□□□□□ -1.92
CSDE1-205ENST00000438362 FAT1Q14517 4588 aa3.08□□□□□ -1.92
CSDE1-205ENST00000438362 KRTAP10-10P60014 251 aa3.08□□□□□ -1.92
CSDE1-205ENST00000438362 DYNC1H1Q14204 4646 aaKnown RBP3.07□□□□□ -1.92
CSDE1-205ENST00000438362 KRTAP4-9Q9BYQ8 210 aa3.06□□□□□ -1.92
CSDE1-205ENST00000438362 BIRC6Q9NR09 4857 aa3.06□□□□□ -1.92
CSDE1-205ENST00000438362 HERC2O95714 4834 aa3.06□□□□□ -1.92
CSDE1-205ENST00000438362 FAT3Q8TDW7 4589 aa3.05□□□□□ -1.92
CSDE1-205ENST00000438362 KRTAP23-1A1A580 65 aa3.04□□□□□ -1.92
CSDE1-205ENST00000438362 KRTAP9-7A8MTY7 169 aa3.04□□□□□ -1.92
CSDE1-205ENST00000438362 PCLOQ9Y6V0 5065 aa3.04□□□□□ -1.92
CSDE1-205ENST00000438362 VPS13BQ7Z7G8 4022 aa3.03□□□□□ -1.92
CSDE1-205ENST00000438362 PKHD1L1Q86WI1 4243 aa3.02□□□□□ -1.93
CSDE1-205ENST00000438362 LCE4AQ5TA78 99 aa3.01□□□□□ -1.93
CSDE1-205ENST00000438362 LCE5AQ5TCM9 118 aa3.01□□□□□ -1.93
CSDE1-205ENST00000438362 KRTAP4-5Q9BYR2 181 aa3.01□□□□□ -1.93
CSDE1-205ENST00000438362 KRTAP9-3Q9BYQ3 159 aa2.98□□□□□ -1.93
CSDE1-205ENST00000438362 PRO2289Q9P1D8 64 aa2.96□□□□□ -1.94
CSDE1-205ENST00000438362 KRTAP4-11Q9BYQ6 195 aa2.95□□□□□ -1.94
CSDE1-205ENST00000438362 ABCA13Q86UQ4 5058 aa2.94□□□□□ -1.94
CSDE1-205ENST00000438362 MYCBP2O75592 4640 aa2.93□□□□□ -1.94
CSDE1-205ENST00000438362 APOBP04114 4563 aaKnown RBP2.92□□□□□ -1.94
CSDE1-205ENST00000438362 RYR1P21817 5038 aa2.9□□□□□ -1.94
CSDE1-205ENST00000438362 KRTAP4-1Q9BYQ7 146 aa2.9□□□□□ -1.95
CSDE1-205ENST00000438362 KRTAP4-2Q9BYR5 136 aa2.89□□□□□ -1.95
CSDE1-205ENST00000438362 LRP1Q07954 4544 aaKnown RBP2.88□□□□□ -1.95
CSDE1-205ENST00000438362 HSPG2P98160 4391 aa2.88□□□□□ -1.95
CSDE1-205ENST00000438362 KIAA1109Q2LD37 5005 aa2.87□□□□□ -1.95
CSDE1-205ENST00000438362 KRTAP17-1Q9BYP8 105 aa2.83□□□□□ -1.96
CSDE1-205ENST00000438362 LCE3AQ5TA76 89 aa2.81□□□□□ -1.96
CSDE1-205ENST00000438362 KRTAP10-12P60413 245 aa2.8□□□□□ -1.96
CSDE1-205ENST00000438362 KRTAP12-3P60328 96 aa2.77□□□□□ -1.97
CSDE1-205ENST00000438362 TNXBP22105 4242 aa2.77□□□□□ -1.97
CSDE1-205ENST00000438362 LRP2P98164 4655 aa2.77□□□□□ -1.97
CSDE1-205ENST00000438362 INE1O15225 51 aa2.75□□□□□ -1.97
CSDE1-205ENST00000438362 SPRR2GQ9BYE4 73 aa2.74□□□□□ -1.97
CSDE1-205ENST00000438362 HERC1Q15751 4861 aa2.7□□□□□ -1.98
CSDE1-205ENST00000438362 MT1HP80294 61 aa2.69□□□□□ -1.98
CSDE1-205ENST00000438362 MT2AP02795 61 aa2.69□□□□□ -1.98
CSDE1-205ENST00000438362 HMCN2Q8NDA2 5059 aa2.68□□□□□ -1.98
CSDE1-205ENST00000438362 MT1FP04733 61 aa2.66□□□□□ -1.98
CSDE1-205ENST00000438362 KRTAP8-1Q8IUC2 63 aa2.64□□□□□ -1.99
CSDE1-205ENST00000438362 LPAP08519 4548 aa2.61□□□□□ -1.99
CSDE1-205ENST00000438362 KRTAP19-2Q3LHN2 52 aa2.59□□□□□ -1.99
CSDE1-205ENST00000438362 SPRR5A0A1B0GTR4 108 aa2.58□□□□□ -2
CSDE1-205ENST00000438362 KRTAP19-8Q3LI54 63 aa2.58□□□□□ -2
CSDE1-205ENST00000438362 MUC17Q685J3 4493 aa2.53□□□□□ -2
CSDE1-205ENST00000438362 MT1XP80297 61 aa2.52□□□□□ -2.01
CSDE1-205ENST00000438362 KRTAP19-5Q3LI72 72 aa2.52□□□□□ -2.01
CSDE1-205ENST00000438362 KRTAP9-8Q9BYQ0 159 aa2.52□□□□□ -2.01
CSDE1-205ENST00000438362 MT1BP07438 61 aa2.51□□□□□ -2.01
CSDE1-205ENST00000438362 KRTAP10-7P60409 375 aaPredicted RBP2.51□□□□□ -2.01
CSDE1-205ENST00000438362 KRTAP10-5P60370 271 aa2.51□□□□□ -2.01
CSDE1-205ENST00000438362 FLGP20930 4061 aaPredicted RBP2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms