RNA–Protein interactions for RNA: ENST00000434813.3

CLK1-205, Transcript of CDC like kinase 1, humanhuman

TSL 2 BASIC

Gene CLK1, Length 2,026 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-205ENST00000434813 COX6B2Q6YFQ2 88 aa9.79□□□□□ -0.84
CLK1-205ENST00000434813 MYCBP2O75592 4640 aa9.79□□□□□ -0.84
CLK1-205ENST00000434813 MT1HL1P0DM35 61 aa9.77□□□□□ -0.85
CLK1-205ENST00000434813 RPL37P61927 97 aaKnown RBP9.73□□□□□ -0.85
CLK1-205ENST00000434813 DMBT1Q9UGM3 2413 aaPredicted RBP9.72□□□□□ -0.85
CLK1-205ENST00000434813 PCLOQ9Y6V0 5065 aa9.69□□□□□ -0.86
CLK1-205ENST00000434813 XP32Q5T750 250 aa9.68□□□□□ -0.86
CLK1-205ENST00000434813 J3QL48 77 aa9.63□□□□□ -0.87
CLK1-205ENST00000434813 H0YAA0 97 aa9.61□□□□□ -0.87
CLK1-205ENST00000434813 RBM12B-AS1Q9P1G2 102 aa9.6□□□□□ -0.87
CLK1-205ENST00000434813 A0A1B0GU33 70 aa9.6□□□□□ -0.87
CLK1-205ENST00000434813 H1FX-AS1Q4G0G2 97 aa9.59□□□□□ -0.87
CLK1-205ENST00000434813 KRTAP3-3Q9BYR6 98 aa9.5□□□□□ -0.89
CLK1-205ENST00000434813 ADM2Q7Z4H4 148 aa9.49□□□□□ -0.89
CLK1-205ENST00000434813 PRAC1Q96KF2 57 aa9.49□□□□□ -0.89
CLK1-205ENST00000434813 TPRXLQ17RH7 258 aa9.45□□□□□ -0.9
CLK1-205ENST00000434813 S4R3F8 94 aa9.44□□□□□ -0.9
CLK1-205ENST00000434813 KRTAP10-6P60371 365 aaPredicted RBP9.38□□□□□ -0.91
CLK1-205ENST00000434813 HERC1Q15751 4861 aa9.38□□□□□ -0.91
CLK1-205ENST00000434813 KRTAP3-2Q9BYR7 98 aa9.32□□□□□ -0.92
CLK1-205ENST00000434813 K7ERS5 55 aa9.27□□□□□ -0.93
CLK1-205ENST00000434813 LRP2P98164 4655 aa9.25□□□□□ -0.93
CLK1-205ENST00000434813 CSAG1Q6PB30 78 aa9.25□□□□□ -0.93
CLK1-205ENST00000434813 KRTAP13-4Q3LI77 160 aa9.24□□□□□ -0.93
CLK1-205ENST00000434813 LPAP08519 4548 aa9.24□□□□□ -0.93
CLK1-205ENST00000434813 P0C880 135 aa9.19□□□□□ -0.94
CLK1-205ENST00000434813 LINC01554Q52M75 96 aa9.16□□□□□ -0.94
CLK1-205ENST00000434813 SEC61BP60468 96 aaKnown RBP9.14□□□□□ -0.95
CLK1-205ENST00000434813 HMCN2Q8NDA2 5059 aa9.11□□□□□ -0.95
CLK1-205ENST00000434813 A0A0D9SG42 100 aa9.1□□□□□ -0.95
CLK1-205ENST00000434813 KRTAP25-1Q3LHN0 102 aa9.07□□□□□ -0.96
CLK1-205ENST00000434813 ROMO1P60602 79 aa9.03□□□□□ -0.96
CLK1-205ENST00000434813 M0QZ58 72 aa8.96□□□□□ -0.98
CLK1-205ENST00000434813 MUC17Q685J3 4493 aa8.94□□□□□ -0.98
CLK1-205ENST00000434813 KRTAP12-2P59991 146 aa8.93□□□□□ -0.98
CLK1-205ENST00000434813 KRTAP12-1P59990 96 aa8.9□□□□□ -0.99
CLK1-205ENST00000434813 KRTAP4-1Q9BYQ7 146 aa8.87□□□□□ -0.99
CLK1-205ENST00000434813 CRIPTQ9P021 101 aa8.87□□□□□ -0.99
CLK1-205ENST00000434813 SPINT4Q6UDR6 99 aa8.83□□□□□ -1
CLK1-205ENST00000434813 UBR4Q5T4S7 5183 aa8.81□□□□□ -1
CLK1-205ENST00000434813 KRTAP19-2Q3LHN2 52 aa8.76□□□□□ -1.01
CLK1-205ENST00000434813 R4GN34 69 aa8.73□□□□□ -1.01
CLK1-205ENST00000434813 MUC2Q02817 5179 aa8.7□□□□□ -1.02
CLK1-205ENST00000434813 C10orf95Q9H7T3 257 aa8.64□□□□□ -1.03
CLK1-205ENST00000434813 LORP23490 312 aaPredicted RBP8.63□□□□□ -1.03
CLK1-205ENST00000434813 RNF213Q63HN8 5207 aa8.62□□□□□ -1.03
CLK1-205ENST00000434813 FLGP20930 4061 aaPredicted RBP8.47□□□□□ -1.05
CLK1-205ENST00000434813 LCE2CQ5TA81 110 aa8.36□□□□□ -1.07
CLK1-205ENST00000434813 FAT4Q6V0I7 4981 aa8.29□□□□□ -1.08
CLK1-205ENST00000434813 M0R2T5 61 aa8.27□□□□□ -1.09
CLK1-205ENST00000434813 CAMK2N1Q7Z7J9 78 aa8.26□□□□□ -1.09
CLK1-205ENST00000434813 MT1HP80294 61 aa8.22□□□□□ -1.09
CLK1-205ENST00000434813 KRTAP15-1Q3LI76 137 aa8.22□□□□□ -1.09
CLK1-205ENST00000434813 LCE2AQ5TA79 106 aaPredicted RBP8.12□□□□□ -1.11
CLK1-205ENST00000434813 PP632Q6XCG6 107 aa8.1□□□□□ -1.11
CLK1-205ENST00000434813 H3BS24 57 aa8.06□□□□□ -1.12
CLK1-205ENST00000434813 SPRR2GQ9BYE4 73 aa8.06□□□□□ -1.12
CLK1-205ENST00000434813 KRTAP19-1Q8IUB9 90 aa8□□□□□ -1.13
CLK1-205ENST00000434813 TNP1P09430 55 aa7.96□□□□□ -1.14
CLK1-205ENST00000434813 KRTAP10-10P60014 251 aa7.94□□□□□ -1.14
CLK1-205ENST00000434813 PLAC4Q8WY50 150 aa7.94□□□□□ -1.14
CLK1-205ENST00000434813 MT2AP02795 61 aa7.93□□□□□ -1.14
CLK1-205ENST00000434813 KRTAP9-8Q9BYQ0 159 aa7.93□□□□□ -1.14
CLK1-205ENST00000434813 KRTAP23-1A1A580 65 aa7.9□□□□□ -1.14
CLK1-205ENST00000434813 MT1FP04733 61 aa7.9□□□□□ -1.14
CLK1-205ENST00000434813 NDUFAF8A1L188 74 aa7.9□□□□□ -1.15
CLK1-205ENST00000434813 KRTAP19-8Q3LI54 63 aa7.73□□□□□ -1.17
CLK1-205ENST00000434813 KRTAP9-3Q9BYQ3 159 aa7.62□□□□□ -1.19
CLK1-205ENST00000434813 MT1BP07438 61 aa7.61□□□□□ -1.19
CLK1-205ENST00000434813 LCE2DQ5TA82 110 aaPredicted RBP7.56□□□□□ -1.2
CLK1-205ENST00000434813 LCE3AQ5TA76 89 aa7.54□□□□□ -1.2
CLK1-205ENST00000434813 KRTAP9-2Q9BYQ4 174 aa7.54□□□□□ -1.2
CLK1-205ENST00000434813 LUZP6Q538Z0 58 aa7.53□□□□□ -1.2
CLK1-205ENST00000434813 KRTAP10-5P60370 271 aa7.52□□□□□ -1.2
CLK1-205ENST00000434813 MT1XP80297 61 aa7.51□□□□□ -1.21
CLK1-205ENST00000434813 SPRR5A0A1B0GTR4 108 aa7.5□□□□□ -1.21
CLK1-205ENST00000434813 KRTAP8-1Q8IUC2 63 aa7.41□□□□□ -1.22
CLK1-205ENST00000434813 LCE2BO14633 110 aa7.39□□□□□ -1.23
CLK1-205ENST00000434813 KRTAP10-12P60413 245 aa7.34□□□□□ -1.24
CLK1-205ENST00000434813 FSIP2Q5CZC0 6907 aa7.33□□□□□ -1.24
CLK1-205ENST00000434813 PRO2289Q9P1D8 64 aa7.29□□□□□ -1.24
CLK1-205ENST00000434813 KRTAP10-7P60409 375 aaPredicted RBP7.27□□□□□ -1.25
CLK1-205ENST00000434813 USH2AO75445 5202 aa7.24□□□□□ -1.25
CLK1-205ENST00000434813 KRTAP12-3P60328 96 aa7.2□□□□□ -1.26
CLK1-205ENST00000434813 CRCT1Q9UGL9 99 aa7.2□□□□□ -1.26
CLK1-205ENST00000434813 KRTAP9-6A0A140TA67 174 aa7.15□□□□□ -1.27
CLK1-205ENST00000434813 SSPOA2VEC9 5147 aa7.1□□□□□ -1.27
CLK1-205ENST00000434813 A0A0A0MQY5 61 aa7.03□□□□□ -1.28
CLK1-205ENST00000434813 KRTAP19-6Q3LI70 58 aa7□□□□□ -1.29
CLK1-205ENST00000434813 KRTAP19-5Q3LI72 72 aa6.94□□□□□ -1.3
CLK1-205ENST00000434813 FCGBPQ9Y6R7 5405 aaPredicted RBP6.89□□□□□ -1.31
CLK1-205ENST00000434813 KRTAP4-8A0A0G2JLE6 195 aa6.81□□□□□ -1.32
CLK1-205ENST00000434813 KRTAP4-8Q9BYQ9 185 aa6.81□□□□□ -1.32
CLK1-205ENST00000434813 LCE3CQ5T5A8 94 aa6.78□□□□□ -1.32
CLK1-205ENST00000434813 KMT2DO14686 5537 aa6.77□□□□□ -1.33
CLK1-205ENST00000434813 KRTAP19-7Q3SYF9 63 aa6.7□□□□□ -1.34
CLK1-205ENST00000434813 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.67□□□□□ -1.34
CLK1-205ENST00000434813 MACF1Q9UPN3 7388 aaKnown RBP6.66□□□□□ -1.34
CLK1-205ENST00000434813 KRTAP19-4Q3LI73 84 aa6.56□□□□□ -1.36
CLK1-205ENST00000434813 SYNE2Q8WXH0 6885 aaKnown RBP6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms