RNA–Protein interactions for RNA: ENST00000429440.5

CDC42BPA-206, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 2

Gene CDC42BPA, Length 2,501 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-206ENST00000429440 PKHD1P08F94 4074 aa4.64□□□□□ -1.67
CDC42BPA-206ENST00000429440 RYR3Q15413 4870 aa4.63□□□□□ -1.67
CDC42BPA-206ENST00000429440 KRTAP10-6P60371 365 aaPredicted RBP4.63□□□□□ -1.67
CDC42BPA-206ENST00000429440 KRTAP13-4Q3LI77 160 aa4.63□□□□□ -1.67
CDC42BPA-206ENST00000429440 S4R3F8 94 aa4.63□□□□□ -1.67
CDC42BPA-206ENST00000429440 A0A0D9SG42 100 aa4.62□□□□□ -1.67
CDC42BPA-206ENST00000429440 KRTAP10-1P60331 282 aa4.59□□□□□ -1.67
CDC42BPA-206ENST00000429440 DMBT1Q9UGM3 2413 aaPredicted RBP4.59□□□□□ -1.68
CDC42BPA-206ENST00000429440 CAMK2N1Q7Z7J9 78 aa4.58□□□□□ -1.68
CDC42BPA-206ENST00000429440 KMT2CQ8NEZ4 4911 aaKnown RBP4.58□□□□□ -1.68
CDC42BPA-206ENST00000429440 PLAC4Q8WY50 150 aa4.58□□□□□ -1.68
CDC42BPA-206ENST00000429440 DYNC1H1Q14204 4646 aaKnown RBP4.58□□□□□ -1.68
CDC42BPA-206ENST00000429440 KRTAP13-2Q52LG2 175 aa4.57□□□□□ -1.68
CDC42BPA-206ENST00000429440 BIRC6Q9NR09 4857 aa4.57□□□□□ -1.68
CDC42BPA-206ENST00000429440 KRTAP1-4P0C5Y4 121 aa4.54□□□□□ -1.68
CDC42BPA-206ENST00000429440 KRTAP12-2P59991 146 aa4.54□□□□□ -1.68
CDC42BPA-206ENST00000429440 FAT1Q14517 4588 aa4.53□□□□□ -1.68
CDC42BPA-206ENST00000429440 APOBP04114 4563 aaKnown RBP4.53□□□□□ -1.68
CDC42BPA-206ENST00000429440 RYR2Q92736 4967 aa4.5□□□□□ -1.69
CDC42BPA-206ENST00000429440 EPPK1P58107 5090 aaKnown RBP4.5□□□□□ -1.69
CDC42BPA-206ENST00000429440 KRTAP12-1P59990 96 aa4.49□□□□□ -1.69
CDC42BPA-206ENST00000429440 PKHD1L1Q86WI1 4243 aa4.48□□□□□ -1.69
CDC42BPA-206ENST00000429440 RPS29P62273 56 aaKnown RBP4.43□□□□□ -1.7
CDC42BPA-206ENST00000429440 PRO2289Q9P1D8 64 aa4.41□□□□□ -1.7
CDC42BPA-206ENST00000429440 A0A1B0GVY2 172 aa4.4□□□□□ -1.7
CDC42BPA-206ENST00000429440 KRTAP10-4P60372 401 aaPredicted RBP4.4□□□□□ -1.7
CDC42BPA-206ENST00000429440 J3QL48 77 aa4.4□□□□□ -1.71
CDC42BPA-206ENST00000429440 SMR3BP02814 79 aaPredicted RBP4.37□□□□□ -1.71
CDC42BPA-206ENST00000429440 M0QZ58 72 aa4.36□□□□□ -1.71
CDC42BPA-206ENST00000429440 LRP1Q07954 4544 aaKnown RBP4.36□□□□□ -1.71
CDC42BPA-206ENST00000429440 FAT3Q8TDW7 4589 aa4.34□□□□□ -1.71
CDC42BPA-206ENST00000429440 TNXBP22105 4242 aa4.34□□□□□ -1.72
CDC42BPA-206ENST00000429440 PCLOQ9Y6V0 5065 aa4.33□□□□□ -1.72
CDC42BPA-206ENST00000429440 HSPG2P98160 4391 aa4.33□□□□□ -1.72
CDC42BPA-206ENST00000429440 C9orf92A6NGG3 77 aa4.32□□□□□ -1.72
CDC42BPA-206ENST00000429440 PP632Q6XCG6 107 aa4.3□□□□□ -1.72
CDC42BPA-206ENST00000429440 HERC2O95714 4834 aa4.3□□□□□ -1.72
CDC42BPA-206ENST00000429440 RYR1P21817 5038 aa4.3□□□□□ -1.72
CDC42BPA-206ENST00000429440 KRTAP10-8P60410 259 aa4.27□□□□□ -1.73
CDC42BPA-206ENST00000429440 MYCBP2O75592 4640 aa4.25□□□□□ -1.73
CDC42BPA-206ENST00000429440 KIAA1109Q2LD37 5005 aa4.24□□□□□ -1.73
CDC42BPA-206ENST00000429440 SPRR5A0A1B0GTR4 108 aa4.23□□□□□ -1.73
CDC42BPA-206ENST00000429440 INE1O15225 51 aa4.22□□□□□ -1.73
CDC42BPA-206ENST00000429440 R4GN34 69 aa4.18□□□□□ -1.74
CDC42BPA-206ENST00000429440 Q5VSD8 79 aa4.15□□□□□ -1.74
CDC42BPA-206ENST00000429440 LCE2BO14633 110 aa4.15□□□□□ -1.75
CDC42BPA-206ENST00000429440 LPAP08519 4548 aa4.11□□□□□ -1.75
CDC42BPA-206ENST00000429440 UBR4Q5T4S7 5183 aa4.1□□□□□ -1.75
CDC42BPA-206ENST00000429440 LRP2P98164 4655 aa4.09□□□□□ -1.75
CDC42BPA-206ENST00000429440 MT1HL1P0DM35 61 aa4.09□□□□□ -1.75
CDC42BPA-206ENST00000429440 ABCA13Q86UQ4 5058 aa4.09□□□□□ -1.76
CDC42BPA-206ENST00000429440 KRTAP23-1A1A580 65 aa4.05□□□□□ -1.76
CDC42BPA-206ENST00000429440 KRTAP4-5Q9BYR2 181 aa3.98□□□□□ -1.77
CDC42BPA-206ENST00000429440 HERC1Q15751 4861 aa3.98□□□□□ -1.77
CDC42BPA-206ENST00000429440 LCE2AQ5TA79 106 aaPredicted RBP3.96□□□□□ -1.77
CDC42BPA-206ENST00000429440 LCE2CQ5TA81 110 aa3.95□□□□□ -1.78
CDC42BPA-206ENST00000429440 MUC17Q685J3 4493 aa3.93□□□□□ -1.78
CDC42BPA-206ENST00000429440 LORP23490 312 aaPredicted RBP3.89□□□□□ -1.79
CDC42BPA-206ENST00000429440 TNP1P09430 55 aa3.88□□□□□ -1.79
CDC42BPA-206ENST00000429440 KRTAP4-1Q9BYQ7 146 aa3.81□□□□□ -1.8
CDC42BPA-206ENST00000429440 MUC2Q02817 5179 aa3.8□□□□□ -1.8
CDC42BPA-206ENST00000429440 KRTAP19-2Q3LHN2 52 aa3.77□□□□□ -1.81
CDC42BPA-206ENST00000429440 KRTAP9-6A0A140TA67 174 aa3.74□□□□□ -1.81
CDC42BPA-206ENST00000429440 HMCN2Q8NDA2 5059 aa3.74□□□□□ -1.81
CDC42BPA-206ENST00000429440 KRTAP9-2Q9BYQ4 174 aa3.71□□□□□ -1.82
CDC42BPA-206ENST00000429440 FLGP20930 4061 aaPredicted RBP3.7□□□□□ -1.82
CDC42BPA-206ENST00000429440 FAT4Q6V0I7 4981 aa3.64□□□□□ -1.83
CDC42BPA-206ENST00000429440 RNF213Q63HN8 5207 aa3.61□□□□□ -1.83
CDC42BPA-206ENST00000429440 KRTAP10-10P60014 251 aa3.59□□□□□ -1.83
CDC42BPA-206ENST00000429440 LCE3AQ5TA76 89 aa3.55□□□□□ -1.84
CDC42BPA-206ENST00000429440 KRTAP8-1Q8IUC2 63 aa3.54□□□□□ -1.84
CDC42BPA-206ENST00000429440 KRTAP10-12P60413 245 aa3.49□□□□□ -1.85
CDC42BPA-206ENST00000429440 MT1HP80294 61 aa3.42□□□□□ -1.86
CDC42BPA-206ENST00000429440 KRTAP19-1Q8IUB9 90 aa3.41□□□□□ -1.86
CDC42BPA-206ENST00000429440 CRCT1Q9UGL9 99 aa3.41□□□□□ -1.86
CDC42BPA-206ENST00000429440 SPRR2GQ9BYE4 73 aa3.39□□□□□ -1.87
CDC42BPA-206ENST00000429440 KRTAP12-3P60328 96 aa3.38□□□□□ -1.87
CDC42BPA-206ENST00000429440 MT1FP04733 61 aa3.36□□□□□ -1.87
CDC42BPA-206ENST00000429440 MT2AP02795 61 aa3.35□□□□□ -1.87
CDC42BPA-206ENST00000429440 KRTAP9-8Q9BYQ0 159 aa3.35□□□□□ -1.87
CDC42BPA-206ENST00000429440 FSIP2Q5CZC0 6907 aa3.35□□□□□ -1.87
CDC42BPA-206ENST00000429440 KRTAP10-5P60370 271 aa3.34□□□□□ -1.87
CDC42BPA-206ENST00000429440 M0R2T5 61 aa3.32□□□□□ -1.88
CDC42BPA-206ENST00000429440 KRTAP9-7A8MTY7 169 aa3.31□□□□□ -1.88
CDC42BPA-206ENST00000429440 KRTAP2-3P0C7H8 128 aa3.3□□□□□ -1.88
CDC42BPA-206ENST00000429440 KRTAP2-4Q9BYR9 128 aa3.3□□□□□ -1.88
CDC42BPA-206ENST00000429440 KRTAP2-1Q9BYU5 128 aa3.3□□□□□ -1.88
CDC42BPA-206ENST00000429440 KRTAP19-8Q3LI54 63 aa3.26□□□□□ -1.89
CDC42BPA-206ENST00000429440 GPR98Q8WXG9 6306 aa3.26□□□□□ -1.89
CDC42BPA-206ENST00000429440 MT1BP07438 61 aa3.24□□□□□ -1.89
CDC42BPA-206ENST00000429440 LCE3CQ5T5A8 94 aa3.23□□□□□ -1.89
CDC42BPA-206ENST00000429440 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.21□□□□□ -1.9
CDC42BPA-206ENST00000429440 KRTAP9-3Q9BYQ3 159 aa3.21□□□□□ -1.9
CDC42BPA-206ENST00000429440 MT1XP80297 61 aa3.2□□□□□ -1.9
CDC42BPA-206ENST00000429440 LOC100996750A0A140TA64 210 aa3.19□□□□□ -1.9
CDC42BPA-206ENST00000429440 KRTAP4-6Q9BYQ5 205 aa3.19□□□□□ -1.9
CDC42BPA-206ENST00000429440 KRTAP10-7P60409 375 aaPredicted RBP3.16□□□□□ -1.9
CDC42BPA-206ENST00000429440 USH2AO75445 5202 aa3.15□□□□□ -1.91
CDC42BPA-206ENST00000429440 KRTAP19-4Q3LI73 84 aa3.15□□□□□ -1.91
CDC42BPA-206ENST00000429440 KRTAP9-6A8MVA2 160 aa3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms