RNA–Protein interactions for RNA: ENST00000421999.7

CMSS1-201, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CMSS1, Length 4,330 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-201ENST00000421999 DNAH17Q9UFH2 4485 aa5.08□□□□□ -1.6
CMSS1-201ENST00000421999 FAT1Q14517 4588 aa5.08□□□□□ -1.6
CMSS1-201ENST00000421999 LRP1BQ9NZR2 4599 aa5.07□□□□□ -1.6
CMSS1-201ENST00000421999 SACSQ9NZJ4 4579 aa5.04□□□□□ -1.6
CMSS1-201ENST00000421999 PKD1P98161 4303 aa5.03□□□□□ -1.6
CMSS1-201ENST00000421999 KRTAP10-10P60014 251 aa5.03□□□□□ -1.6
CMSS1-201ENST00000421999 FAT2Q9NYQ8 4349 aa5.02□□□□□ -1.61
CMSS1-201ENST00000421999 KIAA1109Q2LD37 5005 aa5.02□□□□□ -1.61
CMSS1-201ENST00000421999 KMT2CQ8NEZ4 4911 aaKnown RBP4.99□□□□□ -1.61
CMSS1-201ENST00000421999 ROMO1P60602 79 aa4.99□□□□□ -1.61
CMSS1-201ENST00000421999 RYR2Q92736 4967 aa4.97□□□□□ -1.61
CMSS1-201ENST00000421999 RYR3Q15413 4870 aa4.97□□□□□ -1.61
CMSS1-201ENST00000421999 KRTAP25-1Q3LHN0 102 aa4.96□□□□□ -1.61
CMSS1-201ENST00000421999 A0A0A0MQY5 61 aa4.94□□□□□ -1.62
CMSS1-201ENST00000421999 RYR1P21817 5038 aa4.94□□□□□ -1.62
CMSS1-201ENST00000421999 PKHD1P08F94 4074 aa4.93□□□□□ -1.62
CMSS1-201ENST00000421999 DNAH8Q96JB1 4490 aa4.93□□□□□ -1.62
CMSS1-201ENST00000421999 LUZP6Q538Z0 58 aa4.93□□□□□ -1.62
CMSS1-201ENST00000421999 KRTAP17-1Q9BYP8 105 aa4.88□□□□□ -1.63
CMSS1-201ENST00000421999 APOBP04114 4563 aaKnown RBP4.87□□□□□ -1.63
CMSS1-201ENST00000421999 VPS13BQ7Z7G8 4022 aa4.85□□□□□ -1.63
CMSS1-201ENST00000421999 NDUFAF8A1L188 74 aa4.83□□□□□ -1.64
CMSS1-201ENST00000421999 P0C880 135 aa4.83□□□□□ -1.64
CMSS1-201ENST00000421999 TNP1P09430 55 aa4.83□□□□□ -1.64
CMSS1-201ENST00000421999 KRTAP3-1Q9BYR8 98 aa4.81□□□□□ -1.64
CMSS1-201ENST00000421999 LRP1Q07954 4544 aaKnown RBP4.79□□□□□ -1.64
CMSS1-201ENST00000421999 PRO2289Q9P1D8 64 aa4.74□□□□□ -1.65
CMSS1-201ENST00000421999 MYCBP2O75592 4640 aa4.73□□□□□ -1.65
CMSS1-201ENST00000421999 HERC2O95714 4834 aa4.71□□□□□ -1.65
CMSS1-201ENST00000421999 EPPK1P58107 5090 aaKnown RBP4.71□□□□□ -1.66
CMSS1-201ENST00000421999 FAT3Q8TDW7 4589 aa4.7□□□□□ -1.66
CMSS1-201ENST00000421999 H0YAA0 97 aa4.69□□□□□ -1.66
CMSS1-201ENST00000421999 HSPG2P98160 4391 aa4.69□□□□□ -1.66
CMSS1-201ENST00000421999 PKHD1L1Q86WI1 4243 aa4.68□□□□□ -1.66
CMSS1-201ENST00000421999 BIRC6Q9NR09 4857 aa4.68□□□□□ -1.66
CMSS1-201ENST00000421999 KRTAP4-1Q9BYQ7 146 aa4.59□□□□□ -1.68
CMSS1-201ENST00000421999 C10orf95Q9H7T3 257 aa4.58□□□□□ -1.68
CMSS1-201ENST00000421999 KRTAP3-3Q9BYR6 98 aa4.57□□□□□ -1.68
CMSS1-201ENST00000421999 PP632Q6XCG6 107 aa4.53□□□□□ -1.68
CMSS1-201ENST00000421999 TNXBP22105 4242 aa4.52□□□□□ -1.69
CMSS1-201ENST00000421999 KRTAP10-6P60371 365 aaPredicted RBP4.52□□□□□ -1.69
CMSS1-201ENST00000421999 LRP2P98164 4655 aa4.52□□□□□ -1.69
CMSS1-201ENST00000421999 ABCA13Q86UQ4 5058 aa4.51□□□□□ -1.69
CMSS1-201ENST00000421999 KRTAP12-2P59991 146 aa4.49□□□□□ -1.69
CMSS1-201ENST00000421999 KRTAP13-4Q3LI77 160 aa4.47□□□□□ -1.69
CMSS1-201ENST00000421999 KRTAP3-2Q9BYR7 98 aa4.45□□□□□ -1.7
CMSS1-201ENST00000421999 KRTAP12-1P59990 96 aa4.45□□□□□ -1.7
CMSS1-201ENST00000421999 LPAP08519 4548 aa4.39□□□□□ -1.71
CMSS1-201ENST00000421999 KRTAP15-1Q3LI76 137 aa4.36□□□□□ -1.71
CMSS1-201ENST00000421999 LORP23490 312 aaPredicted RBP4.35□□□□□ -1.71
CMSS1-201ENST00000421999 PCLOQ9Y6V0 5065 aa4.35□□□□□ -1.71
CMSS1-201ENST00000421999 MT1HP80294 61 aa4.35□□□□□ -1.71
CMSS1-201ENST00000421999 HERC1Q15751 4861 aa4.33□□□□□ -1.72
CMSS1-201ENST00000421999 MT2AP02795 61 aa4.22□□□□□ -1.73
CMSS1-201ENST00000421999 KRTAP10-12P60413 245 aa4.19□□□□□ -1.74
CMSS1-201ENST00000421999 MT1FP04733 61 aa4.18□□□□□ -1.74
CMSS1-201ENST00000421999 LCE2CQ5TA81 110 aa4.17□□□□□ -1.74
CMSS1-201ENST00000421999 RNF213Q63HN8 5207 aa4.14□□□□□ -1.75
CMSS1-201ENST00000421999 UBR4Q5T4S7 5183 aa4.13□□□□□ -1.75
CMSS1-201ENST00000421999 HMCN2Q8NDA2 5059 aa4.13□□□□□ -1.75
CMSS1-201ENST00000421999 MUC2Q02817 5179 aa4.11□□□□□ -1.75
CMSS1-201ENST00000421999 KRTAP19-2Q3LHN2 52 aa4.11□□□□□ -1.75
CMSS1-201ENST00000421999 SPRR2GQ9BYE4 73 aa4.09□□□□□ -1.75
CMSS1-201ENST00000421999 CRCT1Q9UGL9 99 aa4.07□□□□□ -1.76
CMSS1-201ENST00000421999 KRTAP8-1Q8IUC2 63 aa4.05□□□□□ -1.76
CMSS1-201ENST00000421999 KRTAP9-8Q9BYQ0 159 aa4.04□□□□□ -1.76
CMSS1-201ENST00000421999 MUC17Q685J3 4493 aa4.04□□□□□ -1.76
CMSS1-201ENST00000421999 FAT4Q6V0I7 4981 aa4.03□□□□□ -1.76
CMSS1-201ENST00000421999 KRTAP12-3P60328 96 aa4.02□□□□□ -1.77
CMSS1-201ENST00000421999 KRTAP19-1Q8IUB9 90 aa4.02□□□□□ -1.77
CMSS1-201ENST00000421999 LCE3AQ5TA76 89 aa4□□□□□ -1.77
CMSS1-201ENST00000421999 FLGP20930 4061 aaPredicted RBP3.96□□□□□ -1.78
CMSS1-201ENST00000421999 KRTAP9-3Q9BYQ3 159 aa3.91□□□□□ -1.78
CMSS1-201ENST00000421999 KRTAP19-8Q3LI54 63 aa3.91□□□□□ -1.78
CMSS1-201ENST00000421999 FSIP2Q5CZC0 6907 aa3.91□□□□□ -1.78
CMSS1-201ENST00000421999 INE1O15225 51 aa3.9□□□□□ -1.79
CMSS1-201ENST00000421999 SPRR2FQ96RM1 72 aa3.88□□□□□ -1.79
CMSS1-201ENST00000421999 MT1BP07438 61 aa3.87□□□□□ -1.79
CMSS1-201ENST00000421999 LCE2AQ5TA79 106 aaPredicted RBP3.86□□□□□ -1.79
CMSS1-201ENST00000421999 KRTAP23-1A1A580 65 aa3.82□□□□□ -1.8
CMSS1-201ENST00000421999 LCE2BO14633 110 aa3.82□□□□□ -1.8
CMSS1-201ENST00000421999 MT1XP80297 61 aa3.79□□□□□ -1.8
CMSS1-201ENST00000421999 KRTAP10-5P60370 271 aa3.76□□□□□ -1.81
CMSS1-201ENST00000421999 KRTAP10-7P60409 375 aaPredicted RBP3.75□□□□□ -1.81
CMSS1-201ENST00000421999 KRTAP19-5Q3LI72 72 aa3.71□□□□□ -1.82
CMSS1-201ENST00000421999 KRTAP9-2Q9BYQ4 174 aa3.65□□□□□ -1.82
CMSS1-201ENST00000421999 KRTAP4-8A0A0G2JLE6 195 aa3.65□□□□□ -1.83
CMSS1-201ENST00000421999 KRTAP4-8Q9BYQ9 185 aa3.65□□□□□ -1.83
CMSS1-201ENST00000421999 SPRR2EP22531 72 aa3.63□□□□□ -1.83
CMSS1-201ENST00000421999 SPRR2BP35325 72 aa3.63□□□□□ -1.83
CMSS1-201ENST00000421999 SPRR2AP35326 72 aa3.63□□□□□ -1.83
CMSS1-201ENST00000421999 SYNE1Q8NF91 8797 aaKnown RBP3.62□□□□□ -1.83
CMSS1-201ENST00000421999 LCE2DQ5TA82 110 aaPredicted RBP3.57□□□□□ -1.84
CMSS1-201ENST00000421999 KRTAP19-6Q3LI70 58 aa3.56□□□□□ -1.84
CMSS1-201ENST00000421999 USH2AO75445 5202 aa3.53□□□□□ -1.84
CMSS1-201ENST00000421999 SPRR2DP22532 72 aa3.5□□□□□ -1.85
CMSS1-201ENST00000421999 LCE3CQ5T5A8 94 aa3.5□□□□□ -1.85
CMSS1-201ENST00000421999 KRTAP9-6A0A140TA67 174 aa3.46□□□□□ -1.86
CMSS1-201ENST00000421999 SPRR5A0A1B0GTR4 108 aa3.44□□□□□ -1.86
CMSS1-201ENST00000421999 MT1GP13640 62 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 174.7 ms