RNA–Protein interactions for RNA: ENST00000421999.7

CMSS1-201, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CMSS1, Length 4,330 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-201ENST00000421999 NISCHQ9Y2I1 1504 aa19.42■□□□□ 0.7
CMSS1-201ENST00000421999 DCAF8L2P0C7V8 631 aa18.11■□□□□ 0.49
CMSS1-201ENST00000421999 SHROOM4Q9ULL8 1493 aa17.17■□□□□ 0.34
CMSS1-201ENST00000421999 SUPT5HO00267 1087 aaKnown RBP16.89■□□□□ 0.29
CMSS1-201ENST00000421999 ABCC9O60706 1549 aa16.63■□□□□ 0.25
CMSS1-201ENST00000421999 CCDC180Q9P1Z9 1646 aa16.39■□□□□ 0.21
CMSS1-201ENST00000421999 ZCCHC6Q5VYS8 1495 aaKnown RBP16.15■□□□□ 0.18
CMSS1-201ENST00000421999 PABPN1Q86U42 306 aaKnown RBP eCLIP16.11■□□□□ 0.17
CMSS1-201ENST00000421999 EHMT2Q96KQ7 1210 aa16.03■□□□□ 0.16
CMSS1-201ENST00000421999 SCRIBQ14160 1630 aa15.84■□□□□ 0.13
CMSS1-201ENST00000421999 FAM9AQ8IZU1 332 aaPredicted RBP15.78■□□□□ 0.12
CMSS1-201ENST00000421999 TRIM41Q8WV44 630 aa15.71■□□□□ 0.11
CMSS1-201ENST00000421999 RB1CC1Q8TDY2 1594 aa15.71■□□□□ 0.11
CMSS1-201ENST00000421999 NACADO15069 1562 aa15.68■□□□□ 0.1
CMSS1-201ENST00000421999 DCAF1Q9Y4B6 1507 aa15.61■□□□□ 0.09
CMSS1-201ENST00000421999 RANGAP1P46060 587 aaPredicted RBP15.51■□□□□ 0.07
CMSS1-201ENST00000421999 APLP2Q06481 763 aa15.49■□□□□ 0.07
CMSS1-201ENST00000421999 CHIC1Q5VXU3 224 aa15.48■□□□□ 0.07
CMSS1-201ENST00000421999 TTBK1Q5TCY1 1321 aaPredicted RBP15.34■□□□□ 0.05
CMSS1-201ENST00000421999 MYO15BQ96JP2 1530 aa15.34■□□□□ 0.05
CMSS1-201ENST00000421999 ATP1B4Q9UN42 357 aaPredicted RBP15.32■□□□□ 0.04
CMSS1-201ENST00000421999 UBTFP17480 764 aaKnown RBP15.31■□□□□ 0.04
CMSS1-201ENST00000421999 RSF1Q96T23 1441 aaPredicted RBP15.29■□□□□ 0.04
CMSS1-201ENST00000421999 CECR2Q9BXF3 1484 aa15.27■□□□□ 0.04
CMSS1-201ENST00000421999 LOC105371045A0A1W2PR82 267 aa15.23■□□□□ 0.03
CMSS1-201ENST00000421999 BAZ1AQ9NRL2 1556 aaPredicted RBP15.1■□□□□ 0.01
CMSS1-201ENST00000421999 MROH2BQ7Z745 1585 aa15.07■□□□□ 0
CMSS1-201ENST00000421999 BAZ1BQ9UIG0 1483 aaKnown RBP15.03■□□□□ -0
CMSS1-201ENST00000421999 PPARGC1BQ86YN6 1023 aaKnown RBP15□□□□□ -0.01
CMSS1-201ENST00000421999 PCGF6Q9BYE7 350 aa15□□□□□ -0.01
CMSS1-201ENST00000421999 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.96□□□□□ -0.01
CMSS1-201ENST00000421999 HNRNPUL2Q1KMD3 747 aaKnown RBP14.96□□□□□ -0.01
CMSS1-201ENST00000421999 CSRNP3Q8WYN3 585 aa14.86□□□□□ -0.03
CMSS1-201ENST00000421999 WIZO95785 1651 aa14.86□□□□□ -0.03
CMSS1-201ENST00000421999 FBLN2P98095 1184 aa14.83□□□□□ -0.04
CMSS1-201ENST00000421999 MYT1LQ9UL68 1186 aa14.81□□□□□ -0.04
CMSS1-201ENST00000421999 SMARCA2P51531 1590 aa14.8□□□□□ -0.04
CMSS1-201ENST00000421999 SMARCA4P51532 1647 aa14.79□□□□□ -0.04
CMSS1-201ENST00000421999 CCDC88BA6NC98 1476 aa14.79□□□□□ -0.04
CMSS1-201ENST00000421999 ATAD2BQ9ULI0 1458 aa14.79□□□□□ -0.04
CMSS1-201ENST00000421999 WRNQ14191 1432 aaPredicted RBP eCLIP14.72□□□□□ -0.05
CMSS1-201ENST00000421999 TOP2AP11388 1531 aaKnown RBP14.7□□□□□ -0.06
CMSS1-201ENST00000421999 ITGAEP38570 1179 aa14.68□□□□□ -0.06
CMSS1-201ENST00000421999 BICRAQ9NZM4 1560 aa14.67□□□□□ -0.06
CMSS1-201ENST00000421999 P3H3Q8IVL6 736 aa14.65□□□□□ -0.06
CMSS1-201ENST00000421999 EIF4G1Q04637 1599 aaKnown RBP14.64□□□□□ -0.07
CMSS1-201ENST00000421999 TRIM26Q12899 539 aaPredicted RBP14.64□□□□□ -0.07
CMSS1-201ENST00000421999 CCER1Q8TC90 406 aaPredicted RBP14.64□□□□□ -0.07
CMSS1-201ENST00000421999 ABCC8Q09428 1581 aa14.57□□□□□ -0.08
CMSS1-201ENST00000421999 ERCC6Q03468 1493 aa14.57□□□□□ -0.08
CMSS1-201ENST00000421999 CADPSQ9ULU8 1353 aa14.56□□□□□ -0.08
CMSS1-201ENST00000421999 NCAPD3P42695 1498 aa14.55□□□□□ -0.08
CMSS1-201ENST00000421999 UNC13AQ9UPW8 1703 aa14.52□□□□□ -0.09
CMSS1-201ENST00000421999 ARID3CA6NKF2 412 aa14.51□□□□□ -0.09
CMSS1-201ENST00000421999 SOGA1O94964 1423 aa14.49□□□□□ -0.09
CMSS1-201ENST00000421999 PDS5BQ9NTI5 1447 aa14.49□□□□□ -0.09
CMSS1-201ENST00000421999 KIF27Q86VH2 1401 aa14.47□□□□□ -0.09
CMSS1-201ENST00000421999 CHMP7Q8WUX9 453 aaPredicted RBP14.47□□□□□ -0.09
CMSS1-201ENST00000421999 EEA1Q15075 1411 aa14.45□□□□□ -0.1
CMSS1-201ENST00000421999 CC2D2AQ9P2K1 1620 aa14.44□□□□□ -0.1
CMSS1-201ENST00000421999 DNAJC5BQ9UF47 199 aa14.43□□□□□ -0.1
CMSS1-201ENST00000421999 CUX2O14529 1486 aa14.41□□□□□ -0.1
CMSS1-201ENST00000421999 FAM50AQ14320 339 aaKnown RBP14.4□□□□□ -0.1
CMSS1-201ENST00000421999 FANCD2Q9BXW9 1451 aa14.37□□□□□ -0.11
CMSS1-201ENST00000421999 GOLGA3Q08378 1498 aa14.36□□□□□ -0.11
CMSS1-201ENST00000421999 TDRD9Q8NDG6 1382 aaKnown RBP14.36□□□□□ -0.11
CMSS1-201ENST00000421999 CLIP1P30622 1438 aa14.34□□□□□ -0.11
CMSS1-201ENST00000421999 CEP164Q9UPV0 1460 aa14.33□□□□□ -0.11
CMSS1-201ENST00000421999 ZEB1P37275 1124 aaPredicted RBP14.33□□□□□ -0.11
CMSS1-201ENST00000421999 CARMIL1Q5VZK9 1371 aa14.31□□□□□ -0.12
CMSS1-201ENST00000421999 HMGXB3Q12766 1538 aa14.31□□□□□ -0.12
CMSS1-201ENST00000421999 CEP162Q5TB80 1403 aa14.3□□□□□ -0.12
CMSS1-201ENST00000421999 NESP48681 1621 aa14.3□□□□□ -0.12
CMSS1-201ENST00000421999 TNIKQ9UKE5 1360 aa14.28□□□□□ -0.12
CMSS1-201ENST00000421999 CFTRP13569 1480 aa14.26□□□□□ -0.13
CMSS1-201ENST00000421999 RUSC2Q8N2Y8 1516 aa14.26□□□□□ -0.13
CMSS1-201ENST00000421999 NPM1P06748 294 aaKnown RBP eCLIP14.25□□□□□ -0.13
CMSS1-201ENST00000421999 POLR3GLQ9BT43 218 aa14.24□□□□□ -0.13
CMSS1-201ENST00000421999 CDK11AQ9UQ88 783 aaPredicted RBP14.22□□□□□ -0.13
CMSS1-201ENST00000421999 TRIM52Q96A61 297 aa14.22□□□□□ -0.13
CMSS1-201ENST00000421999 ZNF777Q9ULD5 760 aaPredicted RBP14.2□□□□□ -0.14
CMSS1-201ENST00000421999 PEG3Q9GZU2 1588 aa14.19□□□□□ -0.14
CMSS1-201ENST00000421999 FGD5Q6ZNL6 1462 aa14.17□□□□□ -0.14
CMSS1-201ENST00000421999 HRCP23327 699 aa14.17□□□□□ -0.14
CMSS1-201ENST00000421999 RAD54L2Q9Y4B4 1467 aa14.16□□□□□ -0.14
CMSS1-201ENST00000421999 MTUS2Q5JR59 1369 aa14.12□□□□□ -0.15
CMSS1-201ENST00000421999 CNGB1Q14028 1251 aaPredicted RBP14.12□□□□□ -0.15
CMSS1-201ENST00000421999 RAPGEF2Q9Y4G8 1499 aa14.11□□□□□ -0.15
CMSS1-201ENST00000421999 SYNJ1O43426 1573 aa14.09□□□□□ -0.15
CMSS1-201ENST00000421999 SLC4A1APQ9BWU0 796 aaKnown RBP14.07□□□□□ -0.16
CMSS1-201ENST00000421999 IGF1RP08069 1367 aa14.07□□□□□ -0.16
CMSS1-201ENST00000421999 PLPPR3Q6T4P5 718 aa14.05□□□□□ -0.16
CMSS1-201ENST00000421999 KCNH8Q96L42 1107 aa14.04□□□□□ -0.16
CMSS1-201ENST00000421999 AQRO60306 1485 aaKnown RBP eCLIP14.04□□□□□ -0.16
CMSS1-201ENST00000421999 CUX1P39880 1505 aa14.04□□□□□ -0.16
CMSS1-201ENST00000421999 GAPVD1Q14C86 1478 aa14.03□□□□□ -0.16
CMSS1-201ENST00000421999 NEUROD1Q13562 356 aa14.03□□□□□ -0.16
CMSS1-201ENST00000421999 ESF1Q9H501 851 aaKnown RBP14.02□□□□□ -0.16
CMSS1-201ENST00000421999 CHIC2Q9UKJ5 165 aa14.02□□□□□ -0.16
CMSS1-201ENST00000421999 PLEKHD1A6NEE1 506 aa14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms