RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 KRTAP10-6P60371 365 aaPredicted RBP9.15□□□□□ -0.94
USP48-204ENST00000400301 KRTAP13-4Q3LI77 160 aa9.11□□□□□ -0.95
USP48-204ENST00000400301 MT1HL1P0DM35 61 aa9.1□□□□□ -0.95
USP48-204ENST00000400301 KRTAP12-2P59991 146 aa9.09□□□□□ -0.95
USP48-204ENST00000400301 FAT1Q14517 4588 aa9.08□□□□□ -0.96
USP48-204ENST00000400301 PLAC4Q8WY50 150 aa9.06□□□□□ -0.96
USP48-204ENST00000400301 DYNC1H1Q14204 4646 aaKnown RBP9.04□□□□□ -0.96
USP48-204ENST00000400301 KRTAP3-3Q9BYR6 98 aa9.04□□□□□ -0.96
USP48-204ENST00000400301 NDUFAF8A1L188 74 aa9.03□□□□□ -0.96
USP48-204ENST00000400301 DNAH7Q8WXX0 4024 aa9.02□□□□□ -0.96
USP48-204ENST00000400301 DYNC2H1Q8NCM8 4307 aaKnown RBP9.02□□□□□ -0.97
USP48-204ENST00000400301 KRTAP12-1P59990 96 aa8.99□□□□□ -0.97
USP48-204ENST00000400301 KRTAP3-2Q9BYR7 98 aa8.96□□□□□ -0.97
USP48-204ENST00000400301 FRAS1Q86XX4 4008 aa8.94□□□□□ -0.98
USP48-204ENST00000400301 HECTD4Q9Y4D8 3996 aa8.91□□□□□ -0.98
USP48-204ENST00000400301 TNP1P09430 55 aa8.89□□□□□ -0.99
USP48-204ENST00000400301 DNAH6Q9C0G6 4158 aa8.87□□□□□ -0.99
USP48-204ENST00000400301 VPS13BQ7Z7G8 4022 aa8.86□□□□□ -0.99
USP48-204ENST00000400301 SACSQ9NZJ4 4579 aa8.82□□□□□ -1
USP48-204ENST00000400301 PP632Q6XCG6 107 aa8.79□□□□□ -1
USP48-204ENST00000400301 KRTAP4-5Q9BYR2 181 aa8.78□□□□□ -1
USP48-204ENST00000400301 A0A0A0MQY5 61 aa8.75□□□□□ -1.01
USP48-204ENST00000400301 FAT2Q9NYQ8 4349 aa8.73□□□□□ -1.01
USP48-204ENST00000400301 MYCBP2O75592 4640 aa8.63□□□□□ -1.03
USP48-204ENST00000400301 HYDINQ4G0P3 5121 aa8.63□□□□□ -1.03
USP48-204ENST00000400301 KRTAP10-10P60014 251 aa8.6□□□□□ -1.03
USP48-204ENST00000400301 APOBP04114 4563 aaKnown RBP8.56□□□□□ -1.04
USP48-204ENST00000400301 RYR1P21817 5038 aa8.55□□□□□ -1.04
USP48-204ENST00000400301 LRP1Q07954 4544 aaKnown RBP8.53□□□□□ -1.04
USP48-204ENST00000400301 KIAA1109Q2LD37 5005 aa8.52□□□□□ -1.04
USP48-204ENST00000400301 PKHD1P08F94 4074 aa8.5□□□□□ -1.05
USP48-204ENST00000400301 RYR3Q15413 4870 aa8.4□□□□□ -1.06
USP48-204ENST00000400301 LORP23490 312 aaPredicted RBP8.4□□□□□ -1.06
USP48-204ENST00000400301 KRTAP17-1Q9BYP8 105 aa8.37□□□□□ -1.07
USP48-204ENST00000400301 PKD1P98161 4303 aa8.35□□□□□ -1.07
USP48-204ENST00000400301 RYR2Q92736 4967 aa8.34□□□□□ -1.07
USP48-204ENST00000400301 FAT3Q8TDW7 4589 aa8.3□□□□□ -1.08
USP48-204ENST00000400301 KRTAP4-1Q9BYQ7 146 aa8.3□□□□□ -1.08
USP48-204ENST00000400301 KRTAP15-1Q3LI76 137 aa8.29□□□□□ -1.08
USP48-204ENST00000400301 KMT2CQ8NEZ4 4911 aaKnown RBP8.14□□□□□ -1.11
USP48-204ENST00000400301 PRO2289Q9P1D8 64 aa8.13□□□□□ -1.11
USP48-204ENST00000400301 LRP2P98164 4655 aa8.11□□□□□ -1.11
USP48-204ENST00000400301 HSPG2P98160 4391 aa8.1□□□□□ -1.11
USP48-204ENST00000400301 PKHD1L1Q86WI1 4243 aa7.94□□□□□ -1.14
USP48-204ENST00000400301 HERC2O95714 4834 aa7.87□□□□□ -1.15
USP48-204ENST00000400301 TNXBP22105 4242 aa7.85□□□□□ -1.15
USP48-204ENST00000400301 KRTAP23-1A1A580 65 aa7.81□□□□□ -1.16
USP48-204ENST00000400301 LPAP08519 4548 aa7.79□□□□□ -1.16
USP48-204ENST00000400301 LCE3AQ5TA76 89 aa7.75□□□□□ -1.17
USP48-204ENST00000400301 KRTAP10-12P60413 245 aa7.73□□□□□ -1.17
USP48-204ENST00000400301 MT1HP80294 61 aa7.71□□□□□ -1.18
USP48-204ENST00000400301 SPRR2GQ9BYE4 73 aa7.68□□□□□ -1.18
USP48-204ENST00000400301 EPPK1P58107 5090 aaKnown RBP7.65□□□□□ -1.18
USP48-204ENST00000400301 MT2AP02795 61 aa7.64□□□□□ -1.19
USP48-204ENST00000400301 KRTAP12-3P60328 96 aa7.61□□□□□ -1.19
USP48-204ENST00000400301 MT1FP04733 61 aa7.57□□□□□ -1.2
USP48-204ENST00000400301 ABCA13Q86UQ4 5058 aa7.5□□□□□ -1.21
USP48-204ENST00000400301 BIRC6Q9NR09 4857 aa7.49□□□□□ -1.21
USP48-204ENST00000400301 KRTAP19-1Q8IUB9 90 aa7.48□□□□□ -1.21
USP48-204ENST00000400301 KRTAP19-2Q3LHN2 52 aa7.46□□□□□ -1.22
USP48-204ENST00000400301 HERC1Q15751 4861 aa7.39□□□□□ -1.23
USP48-204ENST00000400301 LCE2CQ5TA81 110 aa7.38□□□□□ -1.23
USP48-204ENST00000400301 MUC17Q685J3 4493 aa7.35□□□□□ -1.23
USP48-204ENST00000400301 FLGP20930 4061 aaPredicted RBP7.25□□□□□ -1.25
USP48-204ENST00000400301 KRTAP19-8Q3LI54 63 aa7.24□□□□□ -1.25
USP48-204ENST00000400301 KRTAP8-1Q8IUC2 63 aa7.24□□□□□ -1.25
USP48-204ENST00000400301 PCLOQ9Y6V0 5065 aa7.22□□□□□ -1.25
USP48-204ENST00000400301 KRTAP9-8Q9BYQ0 159 aa7.22□□□□□ -1.25
USP48-204ENST00000400301 INE1O15225 51 aa7.18□□□□□ -1.26
USP48-204ENST00000400301 MT1BP07438 61 aa7.13□□□□□ -1.27
USP48-204ENST00000400301 MUC2Q02817 5179 aa7.11□□□□□ -1.27
USP48-204ENST00000400301 MT1XP80297 61 aa7.11□□□□□ -1.27
USP48-204ENST00000400301 KRTAP10-7P60409 375 aaPredicted RBP7.08□□□□□ -1.28
USP48-204ENST00000400301 KRTAP10-5P60370 271 aa7.07□□□□□ -1.28
USP48-204ENST00000400301 KRTAP19-5Q3LI72 72 aa7.03□□□□□ -1.28
USP48-204ENST00000400301 SPRR5A0A1B0GTR4 108 aa6.97□□□□□ -1.29
USP48-204ENST00000400301 KRTAP9-3Q9BYQ3 159 aa6.96□□□□□ -1.3
USP48-204ENST00000400301 FAT4Q6V0I7 4981 aa6.95□□□□□ -1.3
USP48-204ENST00000400301 CRCT1Q9UGL9 99 aa6.94□□□□□ -1.3
USP48-204ENST00000400301 RNF213Q63HN8 5207 aa6.93□□□□□ -1.3
USP48-204ENST00000400301 HMCN2Q8NDA2 5059 aa6.91□□□□□ -1.3
USP48-204ENST00000400301 LCE3CQ5T5A8 94 aa6.87□□□□□ -1.31
USP48-204ENST00000400301 UBR4Q5T4S7 5183 aa6.78□□□□□ -1.32
USP48-204ENST00000400301 KRTAP4-8A0A0G2JLE6 195 aa6.72□□□□□ -1.33
USP48-204ENST00000400301 KRTAP4-8Q9BYQ9 185 aa6.72□□□□□ -1.33
USP48-204ENST00000400301 LCE2BO14633 110 aa6.7□□□□□ -1.34
USP48-204ENST00000400301 KRTAP19-4Q3LI73 84 aa6.52□□□□□ -1.37
USP48-204ENST00000400301 SPRR2FQ96RM1 72 aa6.44□□□□□ -1.38
USP48-204ENST00000400301 KRTAP4-7Q9BYR0 210 aa6.38□□□□□ -1.39
USP48-204ENST00000400301 FSIP2Q5CZC0 6907 aa6.37□□□□□ -1.39
USP48-204ENST00000400301 LCE2AQ5TA79 106 aaPredicted RBP6.36□□□□□ -1.39
USP48-204ENST00000400301 MT1LQ93083 61 aa6.29□□□□□ -1.4
USP48-204ENST00000400301 MT1EP04732 61 aa6.26□□□□□ -1.41
USP48-204ENST00000400301 MT1GP13640 62 aa6.26□□□□□ -1.41
USP48-204ENST00000400301 KRTAP19-7Q3SYF9 63 aa6.19□□□□□ -1.42
USP48-204ENST00000400301 KRTAP19-6Q3LI70 58 aa6.1□□□□□ -1.43
USP48-204ENST00000400301 USH2AO75445 5202 aa6.09□□□□□ -1.44
USP48-204ENST00000400301 KRTAP19-3Q7Z4W3 81 aa6.08□□□□□ -1.44
USP48-204ENST00000400301 LCE3BQ5TA77 95 aa6.02□□□□□ -1.45
USP48-204ENST00000400301 KRTAP4-3Q9BYR4 195 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms