RNA–Protein interactions for RNA: ENST00000393452.7

TDP1-202, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best) BASIC

Gene TDP1, Length 2,370 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-202ENST00000393452 SPINK7P58062 85 aa4.82□□□□□ -1.64
TDP1-202ENST00000393452 PCLOQ9Y6V0 5065 aa4.81□□□□□ -1.64
TDP1-202ENST00000393452 MT1HL1P0DM35 61 aa4.8□□□□□ -1.64
TDP1-202ENST00000393452 FAT3Q8TDW7 4589 aa4.8□□□□□ -1.64
TDP1-202ENST00000393452 KRTAP3-1Q9BYR8 98 aa4.79□□□□□ -1.64
TDP1-202ENST00000393452 A0A1B0GU69 56 aa4.77□□□□□ -1.65
TDP1-202ENST00000393452 ABCA13Q86UQ4 5058 aa4.77□□□□□ -1.65
TDP1-202ENST00000393452 RPL37P61927 97 aaKnown RBP4.76□□□□□ -1.65
TDP1-202ENST00000393452 XP32Q5T750 250 aa4.76□□□□□ -1.65
TDP1-202ENST00000393452 MYCBP2O75592 4640 aa4.74□□□□□ -1.65
TDP1-202ENST00000393452 COX6B2Q6YFQ2 88 aa4.73□□□□□ -1.65
TDP1-202ENST00000393452 SPATA8Q6RVD6 105 aa4.69□□□□□ -1.66
TDP1-202ENST00000393452 UQCR11O14957 56 aa4.68□□□□□ -1.66
TDP1-202ENST00000393452 LINC01554Q52M75 96 aa4.68□□□□□ -1.66
TDP1-202ENST00000393452 PRAC1Q96KF2 57 aa4.67□□□□□ -1.66
TDP1-202ENST00000393452 TPRXLQ17RH7 258 aa4.67□□□□□ -1.66
TDP1-202ENST00000393452 ADM2Q7Z4H4 148 aa4.65□□□□□ -1.67
TDP1-202ENST00000393452 MIR22HGQ0VDD5 57 aa4.64□□□□□ -1.67
TDP1-202ENST00000393452 A0A1B0GU33 70 aa4.56□□□□□ -1.68
TDP1-202ENST00000393452 H0YAA0 97 aa4.56□□□□□ -1.68
TDP1-202ENST00000393452 H1FX-AS1Q4G0G2 97 aa4.56□□□□□ -1.68
TDP1-202ENST00000393452 S4R3F8 94 aa4.55□□□□□ -1.68
TDP1-202ENST00000393452 HERC1Q15751 4861 aa4.54□□□□□ -1.68
TDP1-202ENST00000393452 LRP2P98164 4655 aa4.54□□□□□ -1.68
TDP1-202ENST00000393452 KRTAP10-6P60371 365 aaPredicted RBP4.51□□□□□ -1.69
TDP1-202ENST00000393452 CSAG1Q6PB30 78 aa4.5□□□□□ -1.69
TDP1-202ENST00000393452 LPAP08519 4548 aa4.5□□□□□ -1.69
TDP1-202ENST00000393452 SEC61BP60468 96 aaKnown RBP4.47□□□□□ -1.69
TDP1-202ENST00000393452 P0C880 135 aa4.43□□□□□ -1.7
TDP1-202ENST00000393452 KRTAP13-4Q3LI77 160 aa4.42□□□□□ -1.7
TDP1-202ENST00000393452 KRTAP4-1Q9BYQ7 146 aa4.41□□□□□ -1.7
TDP1-202ENST00000393452 HMCN2Q8NDA2 5059 aa4.37□□□□□ -1.71
TDP1-202ENST00000393452 K7ERS5 55 aa4.36□□□□□ -1.71
TDP1-202ENST00000393452 MUC17Q685J3 4493 aa4.36□□□□□ -1.71
TDP1-202ENST00000393452 KRTAP19-2Q3LHN2 52 aa4.35□□□□□ -1.71
TDP1-202ENST00000393452 ROMO1P60602 79 aa4.35□□□□□ -1.71
TDP1-202ENST00000393452 KRTAP25-1Q3LHN0 102 aa4.35□□□□□ -1.71
TDP1-202ENST00000393452 LCE2CQ5TA81 110 aa4.34□□□□□ -1.72
TDP1-202ENST00000393452 A0A0D9SG42 100 aa4.33□□□□□ -1.72
TDP1-202ENST00000393452 LCE2AQ5TA79 106 aaPredicted RBP4.32□□□□□ -1.72
TDP1-202ENST00000393452 M0QZ58 72 aa4.32□□□□□ -1.72
TDP1-202ENST00000393452 UBR4Q5T4S7 5183 aa4.31□□□□□ -1.72
TDP1-202ENST00000393452 LCE2BO14633 110 aa4.31□□□□□ -1.72
TDP1-202ENST00000393452 KRTAP12-1P59990 96 aa4.26□□□□□ -1.73
TDP1-202ENST00000393452 KRTAP12-2P59991 146 aa4.26□□□□□ -1.73
TDP1-202ENST00000393452 CRIPTQ9P021 101 aa4.26□□□□□ -1.73
TDP1-202ENST00000393452 RNF213Q63HN8 5207 aa4.24□□□□□ -1.73
TDP1-202ENST00000393452 MUC2Q02817 5179 aa4.24□□□□□ -1.73
TDP1-202ENST00000393452 R4GN34 69 aa4.21□□□□□ -1.73
TDP1-202ENST00000393452 FLGP20930 4061 aaPredicted RBP4.2□□□□□ -1.74
TDP1-202ENST00000393452 LORP23490 312 aaPredicted RBP4.2□□□□□ -1.74
TDP1-202ENST00000393452 SPINT4Q6UDR6 99 aa4.2□□□□□ -1.74
TDP1-202ENST00000393452 KRTAP9-6A0A140TA67 174 aa4.19□□□□□ -1.74
TDP1-202ENST00000393452 KRTAP9-2Q9BYQ4 174 aa4.18□□□□□ -1.74
TDP1-202ENST00000393452 LUZP6Q538Z0 58 aa4.15□□□□□ -1.75
TDP1-202ENST00000393452 NDUFAF8A1L188 74 aa4.11□□□□□ -1.75
TDP1-202ENST00000393452 C10orf95Q9H7T3 257 aa4.07□□□□□ -1.76
TDP1-202ENST00000393452 FAT4Q6V0I7 4981 aa4.06□□□□□ -1.76
TDP1-202ENST00000393452 KRTAP23-1A1A580 65 aa4.02□□□□□ -1.77
TDP1-202ENST00000393452 MT1HP80294 61 aa4.02□□□□□ -1.77
TDP1-202ENST00000393452 KRTAP15-1Q3LI76 137 aa4.02□□□□□ -1.77
TDP1-202ENST00000393452 SPRR2GQ9BYE4 73 aa3.97□□□□□ -1.77
TDP1-202ENST00000393452 M0R2T5 61 aa3.96□□□□□ -1.78
TDP1-202ENST00000393452 CAMK2N1Q7Z7J9 78 aa3.96□□□□□ -1.78
TDP1-202ENST00000393452 KRTAP19-1Q8IUB9 90 aa3.95□□□□□ -1.78
TDP1-202ENST00000393452 CRCT1Q9UGL9 99 aa3.93□□□□□ -1.78
TDP1-202ENST00000393452 MT2AP02795 61 aa3.92□□□□□ -1.78
TDP1-202ENST00000393452 KRTAP9-8Q9BYQ0 159 aa3.92□□□□□ -1.78
TDP1-202ENST00000393452 MT1FP04733 61 aa3.91□□□□□ -1.78
TDP1-202ENST00000393452 KRTAP10-10P60014 251 aa3.88□□□□□ -1.79
TDP1-202ENST00000393452 PP632Q6XCG6 107 aa3.85□□□□□ -1.79
TDP1-202ENST00000393452 PLAC4Q8WY50 150 aa3.85□□□□□ -1.79
TDP1-202ENST00000393452 TNP1P09430 55 aa3.82□□□□□ -1.8
TDP1-202ENST00000393452 KRTAP19-8Q3LI54 63 aa3.82□□□□□ -1.8
TDP1-202ENST00000393452 KRTAP9-3Q9BYQ3 159 aa3.77□□□□□ -1.81
TDP1-202ENST00000393452 MT1BP07438 61 aa3.76□□□□□ -1.81
TDP1-202ENST00000393452 LOC100996750A0A140TA64 210 aa3.72□□□□□ -1.81
TDP1-202ENST00000393452 KRTAP4-6Q9BYQ5 205 aa3.72□□□□□ -1.81
TDP1-202ENST00000393452 KRTAP9-7A8MTY7 169 aa3.71□□□□□ -1.81
TDP1-202ENST00000393452 KRTAP10-5P60370 271 aa3.69□□□□□ -1.82
TDP1-202ENST00000393452 MT1XP80297 61 aa3.69□□□□□ -1.82
TDP1-202ENST00000393452 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.67□□□□□ -1.82
TDP1-202ENST00000393452 FSIP2Q5CZC0 6907 aa3.64□□□□□ -1.83
TDP1-202ENST00000393452 LCE3AQ5TA76 89 aa3.63□□□□□ -1.83
TDP1-202ENST00000393452 KRTAP8-1Q8IUC2 63 aa3.59□□□□□ -1.84
TDP1-202ENST00000393452 USH2AO75445 5202 aa3.58□□□□□ -1.84
TDP1-202ENST00000393452 PRO2289Q9P1D8 64 aa3.58□□□□□ -1.84
TDP1-202ENST00000393452 KRTAP10-12P60413 245 aa3.56□□□□□ -1.84
TDP1-202ENST00000393452 KRTAP10-7P60409 375 aaPredicted RBP3.55□□□□□ -1.84
TDP1-202ENST00000393452 SPRR5A0A1B0GTR4 108 aa3.55□□□□□ -1.84
TDP1-202ENST00000393452 KRTAP12-3P60328 96 aa3.48□□□□□ -1.85
TDP1-202ENST00000393452 SSPOA2VEC9 5147 aa3.46□□□□□ -1.86
TDP1-202ENST00000393452 KRTAP6-3Q3LI67 103 aa3.4□□□□□ -1.86
TDP1-202ENST00000393452 KRTAP19-5Q3LI72 72 aa3.38□□□□□ -1.87
TDP1-202ENST00000393452 KRTAP4-8A0A0G2JLE6 195 aa3.36□□□□□ -1.87
TDP1-202ENST00000393452 KRTAP4-8Q9BYQ9 185 aa3.36□□□□□ -1.87
TDP1-202ENST00000393452 KRTAP19-6Q3LI70 58 aa3.33□□□□□ -1.88
TDP1-202ENST00000393452 FCGBPQ9Y6R7 5405 aaPredicted RBP3.32□□□□□ -1.88
TDP1-202ENST00000393452 KMT2DO14686 5537 aa3.31□□□□□ -1.88
TDP1-202ENST00000393452 KRTAP19-7Q3SYF9 63 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 158.7 ms