RNA–Protein interactions for RNA: ENST00000380358.8

CHD3-203, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2 BASIC

Gene CHD3, Length 7,356 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-203ENST00000380358 SPRR2FQ96RM1 72 aa5.13□□□□□ -1.59
CHD3-203ENST00000380358 ANK3Q12955 4377 aaKnown RBP5.11□□□□□ -1.59
CHD3-203ENST00000380358 OTOGQ6ZRI0 2925 aa5.08□□□□□ -1.6
CHD3-203ENST00000380358 HUWE1Q7Z6Z7 4374 aaKnown RBP5.05□□□□□ -1.6
CHD3-203ENST00000380358 KRTAP10-7P60409 375 aaPredicted RBP5.05□□□□□ -1.6
CHD3-203ENST00000380358 ANK2Q01484 3957 aa4.88□□□□□ -1.63
CHD3-203ENST00000380358 SPRR2EP22531 72 aa4.87□□□□□ -1.63
CHD3-203ENST00000380358 SPRR2BP35325 72 aa4.87□□□□□ -1.63
CHD3-203ENST00000380358 SPRR2AP35326 72 aa4.87□□□□□ -1.63
CHD3-203ENST00000380358 KRTAP19-5Q3LI72 72 aa4.87□□□□□ -1.63
CHD3-203ENST00000380358 ALMS1Q8TCU4 4167 aa4.87□□□□□ -1.63
CHD3-203ENST00000380358 MT1HP80294 61 aa4.85□□□□□ -1.63
CHD3-203ENST00000380358 KRTAP10-4P60372 401 aaPredicted RBP4.84□□□□□ -1.63
CHD3-203ENST00000380358 LYSTQ99698 3801 aa4.83□□□□□ -1.64
CHD3-203ENST00000380358 LCE3BQ5TA77 95 aa4.83□□□□□ -1.64
CHD3-203ENST00000380358 KRTAP4-1Q9BYQ7 146 aa4.81□□□□□ -1.64
CHD3-203ENST00000380358 KRTAP23-1A1A580 65 aa4.79□□□□□ -1.64
CHD3-203ENST00000380358 MT2AP02795 61 aa4.71□□□□□ -1.66
CHD3-203ENST00000380358 SPRR2DP22532 72 aa4.68□□□□□ -1.66
CHD3-203ENST00000380358 LCE3CQ5T5A8 94 aa4.67□□□□□ -1.66
CHD3-203ENST00000380358 DNAH2Q9P225 4427 aa4.66□□□□□ -1.66
CHD3-203ENST00000380358 FRAS1Q86XX4 4008 aa4.66□□□□□ -1.66
CHD3-203ENST00000380358 MT1FP04733 61 aa4.65□□□□□ -1.66
CHD3-203ENST00000380358 CMYA5Q8N3K9 4069 aa4.63□□□□□ -1.67
CHD3-203ENST00000380358 MT1GP13640 62 aa4.61□□□□□ -1.67
CHD3-203ENST00000380358 DNAH10Q8IVF4 4471 aa4.61□□□□□ -1.67
CHD3-203ENST00000380358 DNAH7Q8WXX0 4024 aa4.59□□□□□ -1.67
CHD3-203ENST00000380358 LCE2BO14633 110 aa4.56□□□□□ -1.68
CHD3-203ENST00000380358 KMT2AQ03164 3969 aa4.55□□□□□ -1.68
CHD3-203ENST00000380358 DNAH1Q9P2D7 4330 aa4.55□□□□□ -1.68
CHD3-203ENST00000380358 VPS13BQ7Z7G8 4022 aa4.51□□□□□ -1.69
CHD3-203ENST00000380358 DNAH9Q9NYC9 4486 aa4.51□□□□□ -1.69
CHD3-203ENST00000380358 SPRR2GQ9BYE4 73 aa4.49□□□□□ -1.69
CHD3-203ENST00000380358 KRTAP12-4P60329 112 aa4.48□□□□□ -1.69
CHD3-203ENST00000380358 DNAH8Q96JB1 4490 aa4.46□□□□□ -1.7
CHD3-203ENST00000380358 SPRR5A0A1B0GTR4 108 aa4.44□□□□□ -1.7
CHD3-203ENST00000380358 DNAH5Q8TE73 4624 aa4.4□□□□□ -1.7
CHD3-203ENST00000380358 DNAH17Q9UFH2 4485 aa4.4□□□□□ -1.71
CHD3-203ENST00000380358 FAT1Q14517 4588 aa4.4□□□□□ -1.71
CHD3-203ENST00000380358 MT4P47944 62 aa4.37□□□□□ -1.71
CHD3-203ENST00000380358 KRTAP4-8A0A0G2JLE6 195 aa4.37□□□□□ -1.71
CHD3-203ENST00000380358 LCE2CQ5TA81 110 aa4.37□□□□□ -1.71
CHD3-203ENST00000380358 KRTAP4-8Q9BYQ9 185 aa4.37□□□□□ -1.71
CHD3-203ENST00000380358 PRKDCP78527 4128 aaKnown RBP4.36□□□□□ -1.71
CHD3-203ENST00000380358 FAT2Q9NYQ8 4349 aa4.36□□□□□ -1.71
CHD3-203ENST00000380358 HECTD4Q9Y4D8 3996 aa4.34□□□□□ -1.71
CHD3-203ENST00000380358 DNAH6Q9C0G6 4158 aa4.34□□□□□ -1.71
CHD3-203ENST00000380358 LCE2DQ5TA82 110 aaPredicted RBP4.34□□□□□ -1.72
CHD3-203ENST00000380358 DNAH3Q8TD57 4116 aa4.31□□□□□ -1.72
CHD3-203ENST00000380358 PLECQ15149 4684 aaKnown RBP4.3□□□□□ -1.72
CHD3-203ENST00000380358 DNAH11Q96DT5 4516 aa4.3□□□□□ -1.72
CHD3-203ENST00000380358 LCE3DQ9BYE3 92 aa4.29□□□□□ -1.72
CHD3-203ENST00000380358 LCE3EQ5T5B0 92 aa4.26□□□□□ -1.73
CHD3-203ENST00000380358 LCE1BQ5T7P3 118 aa4.24□□□□□ -1.73
CHD3-203ENST00000380358 KRTAP19-1Q8IUB9 90 aa4.23□□□□□ -1.73
CHD3-203ENST00000380358 STARD9Q9P2P6 4700 aa4.22□□□□□ -1.73
CHD3-203ENST00000380358 LRP1BQ9NZR2 4599 aa4.2□□□□□ -1.74
CHD3-203ENST00000380358 VPS13DQ5THJ4 4388 aa4.18□□□□□ -1.74
CHD3-203ENST00000380358 KRTAP4-7Q9BYR0 210 aa4.17□□□□□ -1.74
CHD3-203ENST00000380358 MT1XP80297 61 aa4.16□□□□□ -1.74
CHD3-203ENST00000380358 LCE1DQ5T752 114 aa4.15□□□□□ -1.74
CHD3-203ENST00000380358 PKHD1P08F94 4074 aa4.14□□□□□ -1.75
CHD3-203ENST00000380358 APOBP04114 4563 aaKnown RBP4.12□□□□□ -1.75
CHD3-203ENST00000380358 SACSQ9NZJ4 4579 aa4.12□□□□□ -1.75
CHD3-203ENST00000380358 DYNC2H1Q8NCM8 4307 aaKnown RBP4.1□□□□□ -1.75
CHD3-203ENST00000380358 PRM1P04553 51 aa4.03□□□□□ -1.76
CHD3-203ENST00000380358 KRTAP17-1Q9BYP8 105 aa4.02□□□□□ -1.77
CHD3-203ENST00000380358 LOC100996750A0A140TA64 210 aa4.01□□□□□ -1.77
CHD3-203ENST00000380358 MT1BP07438 61 aa4.01□□□□□ -1.77
CHD3-203ENST00000380358 FAT3Q8TDW7 4589 aa4□□□□□ -1.77
CHD3-203ENST00000380358 KRTAP19-8Q3LI54 63 aa3.99□□□□□ -1.77
CHD3-203ENST00000380358 LPAP08519 4548 aa3.99□□□□□ -1.77
CHD3-203ENST00000380358 LCE5AQ5TCM9 118 aa3.98□□□□□ -1.77
CHD3-203ENST00000380358 RYR1P21817 5038 aa3.96□□□□□ -1.78
CHD3-203ENST00000380358 DYNC1H1Q14204 4646 aaKnown RBP3.96□□□□□ -1.78
CHD3-203ENST00000380358 KRTAP19-3Q7Z4W3 81 aa3.95□□□□□ -1.78
CHD3-203ENST00000380358 KRTAP9-8Q9BYQ0 159 aa3.95□□□□□ -1.78
CHD3-203ENST00000380358 KRTAP4-3Q9BYR4 195 aa3.93□□□□□ -1.78
CHD3-203ENST00000380358 KRTAP19-4Q3LI73 84 aa3.91□□□□□ -1.78
CHD3-203ENST00000380358 MYCBP2O75592 4640 aa3.89□□□□□ -1.79
CHD3-203ENST00000380358 LRP1Q07954 4544 aaKnown RBP3.88□□□□□ -1.79
CHD3-203ENST00000380358 DNHD1Q96M86 4753 aa3.88□□□□□ -1.79
CHD3-203ENST00000380358 PKD1P98161 4303 aa3.88□□□□□ -1.79
CHD3-203ENST00000380358 KRTAP9-3Q9BYQ3 159 aa3.86□□□□□ -1.79
CHD3-203ENST00000380358 MT3P25713 68 aa3.85□□□□□ -1.79
CHD3-203ENST00000380358 KRTAP9-2Q9BYQ4 174 aa3.85□□□□□ -1.79
CHD3-203ENST00000380358 KRTAP4-9Q9BYQ8 210 aa3.82□□□□□ -1.8
CHD3-203ENST00000380358 MT1LQ93083 61 aa3.82□□□□□ -1.8
CHD3-203ENST00000380358 HYDINQ4G0P3 5121 aa3.82□□□□□ -1.8
CHD3-203ENST00000380358 LCE1CQ5T751 118 aa3.81□□□□□ -1.8
CHD3-203ENST00000380358 LCE1EQ5T753 118 aa3.81□□□□□ -1.8
CHD3-203ENST00000380358 LCE1FQ5T754 118 aa3.81□□□□□ -1.8
CHD3-203ENST00000380358 LCE1AQ5T7P2 110 aa3.81□□□□□ -1.8
CHD3-203ENST00000380358 SYNE2Q8WXH0 6885 aaKnown RBP3.77□□□□□ -1.81
CHD3-203ENST00000380358 MT1EP04732 61 aa3.76□□□□□ -1.81
CHD3-203ENST00000380358 PKHD1L1Q86WI1 4243 aa3.76□□□□□ -1.81
CHD3-203ENST00000380358 KRTAP19-6Q3LI70 58 aa3.76□□□□□ -1.81
CHD3-203ENST00000380358 HSPG2P98160 4391 aa3.73□□□□□ -1.81
CHD3-203ENST00000380358 MT1MQ8N339 61 aa3.73□□□□□ -1.81
CHD3-203ENST00000380358 FLGP20930 4061 aaPredicted RBP3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms