RNA–Protein interactions for RNA: ENST00000375290.6

PTCH1-204, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 10,631 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-204ENST00000375290 SPRR2GQ9BYE4 73 aa4.17□□□□□ -1.74
PTCH1-204ENST00000375290 DNAH3Q8TD57 4116 aa4.14□□□□□ -1.75
PTCH1-204ENST00000375290 KRTAP8-1Q8IUC2 63 aa4.09□□□□□ -1.75
PTCH1-204ENST00000375290 CSMD2Q7Z408 3487 aa4.06□□□□□ -1.76
PTCH1-204ENST00000375290 CRCT1Q9UGL9 99 aa4.04□□□□□ -1.76
PTCH1-204ENST00000375290 CSMD3Q7Z407 3707 aa4.02□□□□□ -1.77
PTCH1-204ENST00000375290 LORP23490 312 aaPredicted RBP4.02□□□□□ -1.77
PTCH1-204ENST00000375290 DNAH2Q9P225 4427 aa4.01□□□□□ -1.77
PTCH1-204ENST00000375290 SPRR5A0A1B0GTR4 108 aa4□□□□□ -1.77
PTCH1-204ENST00000375290 DNAH1Q9P2D7 4330 aa3.99□□□□□ -1.77
PTCH1-204ENST00000375290 ZNF469Q96JG9 3925 aaPredicted RBP3.98□□□□□ -1.77
PTCH1-204ENST00000375290 DNAH10Q8IVF4 4471 aa3.97□□□□□ -1.77
PTCH1-204ENST00000375290 LCE3CQ5T5A8 94 aa3.96□□□□□ -1.78
PTCH1-204ENST00000375290 DNAH6Q9C0G6 4158 aa3.94□□□□□ -1.78
PTCH1-204ENST00000375290 DNAH9Q9NYC9 4486 aa3.94□□□□□ -1.78
PTCH1-204ENST00000375290 DNAH5Q8TE73 4624 aa3.94□□□□□ -1.78
PTCH1-204ENST00000375290 DNAH11Q96DT5 4516 aa3.93□□□□□ -1.78
PTCH1-204ENST00000375290 CMYA5Q8N3K9 4069 aa3.92□□□□□ -1.78
PTCH1-204ENST00000375290 DNAH7Q8WXX0 4024 aa3.92□□□□□ -1.78
PTCH1-204ENST00000375290 HECTD4Q9Y4D8 3996 aa3.91□□□□□ -1.78
PTCH1-204ENST00000375290 KRTAP10-5P60370 271 aa3.9□□□□□ -1.79
PTCH1-204ENST00000375290 VPS13BQ7Z7G8 4022 aa3.89□□□□□ -1.79
PTCH1-204ENST00000375290 VPS13DQ5THJ4 4388 aa3.89□□□□□ -1.79
PTCH1-204ENST00000375290 ANK2Q01484 3957 aa3.89□□□□□ -1.79
PTCH1-204ENST00000375290 DNAH17Q9UFH2 4485 aa3.86□□□□□ -1.79
PTCH1-204ENST00000375290 PLECQ15149 4684 aaKnown RBP3.85□□□□□ -1.79
PTCH1-204ENST00000375290 DYNC2H1Q8NCM8 4307 aaKnown RBP3.84□□□□□ -1.79
PTCH1-204ENST00000375290 MT1HP80294 61 aa3.82□□□□□ -1.8
PTCH1-204ENST00000375290 DNAH8Q96JB1 4490 aa3.81□□□□□ -1.8
PTCH1-204ENST00000375290 KRTAP19-8Q3LI54 63 aa3.81□□□□□ -1.8
PTCH1-204ENST00000375290 MT2AP02795 61 aa3.8□□□□□ -1.8
PTCH1-204ENST00000375290 LYSTQ99698 3801 aa3.79□□□□□ -1.8
PTCH1-204ENST00000375290 FAT2Q9NYQ8 4349 aa3.75□□□□□ -1.81
PTCH1-204ENST00000375290 KRTAP19-5Q3LI72 72 aa3.74□□□□□ -1.81
PTCH1-204ENST00000375290 KRTAP10-7P60409 375 aaPredicted RBP3.73□□□□□ -1.81
PTCH1-204ENST00000375290 KRTAP4-5Q9BYR2 181 aa3.73□□□□□ -1.81
PTCH1-204ENST00000375290 SACSQ9NZJ4 4579 aa3.72□□□□□ -1.81
PTCH1-204ENST00000375290 STARD9Q9P2P6 4700 aa3.72□□□□□ -1.81
PTCH1-204ENST00000375290 KMT2AQ03164 3969 aa3.72□□□□□ -1.81
PTCH1-204ENST00000375290 KRTAP4-1Q9BYQ7 146 aa3.71□□□□□ -1.82
PTCH1-204ENST00000375290 FRAS1Q86XX4 4008 aa3.71□□□□□ -1.82
PTCH1-204ENST00000375290 DYNC1H1Q14204 4646 aaKnown RBP3.7□□□□□ -1.82
PTCH1-204ENST00000375290 MT1FP04733 61 aa3.65□□□□□ -1.82
PTCH1-204ENST00000375290 KRTAP19-1Q8IUB9 90 aa3.65□□□□□ -1.83
PTCH1-204ENST00000375290 LRP1BQ9NZR2 4599 aa3.64□□□□□ -1.83
PTCH1-204ENST00000375290 PRKDCP78527 4128 aaKnown RBP3.64□□□□□ -1.83
PTCH1-204ENST00000375290 MT1XP80297 61 aa3.56□□□□□ -1.84
PTCH1-204ENST00000375290 KRTAP12-4P60329 112 aa3.55□□□□□ -1.84
PTCH1-204ENST00000375290 LRP1Q07954 4544 aaKnown RBP3.54□□□□□ -1.84
PTCH1-204ENST00000375290 FAT1Q14517 4588 aa3.54□□□□□ -1.84
PTCH1-204ENST00000375290 APOBP04114 4563 aaKnown RBP3.54□□□□□ -1.84
PTCH1-204ENST00000375290 MT1GP13640 62 aa3.53□□□□□ -1.84
PTCH1-204ENST00000375290 FLGP20930 4061 aaPredicted RBP3.51□□□□□ -1.85
PTCH1-204ENST00000375290 RYR1P21817 5038 aa3.47□□□□□ -1.85
PTCH1-204ENST00000375290 SPRR2FQ96RM1 72 aa3.47□□□□□ -1.85
PTCH1-204ENST00000375290 MT1LQ93083 61 aa3.46□□□□□ -1.86
PTCH1-204ENST00000375290 LCE3EQ5T5B0 92 aa3.44□□□□□ -1.86
PTCH1-204ENST00000375290 LCE3DQ9BYE3 92 aa3.44□□□□□ -1.86
PTCH1-204ENST00000375290 MT1BP07438 61 aa3.43□□□□□ -1.86
PTCH1-204ENST00000375290 PKHD1P08F94 4074 aa3.42□□□□□ -1.86
PTCH1-204ENST00000375290 PKHD1L1Q86WI1 4243 aa3.4□□□□□ -1.87
PTCH1-204ENST00000375290 KRTAP9-8Q9BYQ0 159 aa3.4□□□□□ -1.87
PTCH1-204ENST00000375290 MT1EP04732 61 aa3.37□□□□□ -1.87
PTCH1-204ENST00000375290 HSPG2P98160 4391 aa3.36□□□□□ -1.87
PTCH1-204ENST00000375290 RYR2Q92736 4967 aa3.36□□□□□ -1.87
PTCH1-204ENST00000375290 MYCBP2O75592 4640 aa3.35□□□□□ -1.87
PTCH1-204ENST00000375290 FAT3Q8TDW7 4589 aa3.35□□□□□ -1.87
PTCH1-204ENST00000375290 RYR3Q15413 4870 aa3.33□□□□□ -1.88
PTCH1-204ENST00000375290 MT3P25713 68 aa3.32□□□□□ -1.88
PTCH1-204ENST00000375290 LCE3BQ5TA77 95 aa3.31□□□□□ -1.88
PTCH1-204ENST00000375290 KRTAP9-3Q9BYQ3 159 aa3.31□□□□□ -1.88
PTCH1-204ENST00000375290 KRTAP19-3Q7Z4W3 81 aa3.29□□□□□ -1.88
PTCH1-204ENST00000375290 PKD1P98161 4303 aa3.27□□□□□ -1.89
PTCH1-204ENST00000375290 DNHD1Q96M86 4753 aa3.27□□□□□ -1.89
PTCH1-204ENST00000375290 LCE2CQ5TA81 110 aa3.26□□□□□ -1.89
PTCH1-204ENST00000375290 TNXBP22105 4242 aa3.25□□□□□ -1.89
PTCH1-204ENST00000375290 LCE2BO14633 110 aa3.25□□□□□ -1.89
PTCH1-204ENST00000375290 KRTAP2-3P0C7H8 128 aa3.22□□□□□ -1.89
PTCH1-204ENST00000375290 KRTAP2-4Q9BYR9 128 aa3.22□□□□□ -1.89
PTCH1-204ENST00000375290 KRTAP2-1Q9BYU5 128 aa3.22□□□□□ -1.89
PTCH1-204ENST00000375290 KRTAP19-2Q3LHN2 52 aa3.2□□□□□ -1.9
PTCH1-204ENST00000375290 SPRR2EP22531 72 aa3.18□□□□□ -1.9
PTCH1-204ENST00000375290 SPRR2BP35325 72 aa3.18□□□□□ -1.9
PTCH1-204ENST00000375290 SPRR2AP35326 72 aa3.18□□□□□ -1.9
PTCH1-204ENST00000375290 HERC1Q15751 4861 aa3.15□□□□□ -1.91
PTCH1-204ENST00000375290 MT1AP04731 61 aa3.14□□□□□ -1.91
PTCH1-204ENST00000375290 SPRR2DP22532 72 aa3.14□□□□□ -1.91
PTCH1-204ENST00000375290 MUC17Q685J3 4493 aa3.13□□□□□ -1.91
PTCH1-204ENST00000375290 MT1MQ8N339 61 aa3.13□□□□□ -1.91
PTCH1-204ENST00000375290 LRP2P98164 4655 aa3.12□□□□□ -1.91
PTCH1-204ENST00000375290 KRTAP4-8A0A0G2JLE6 195 aa3.09□□□□□ -1.91
PTCH1-204ENST00000375290 KRTAP4-8Q9BYQ9 185 aa3.09□□□□□ -1.91
PTCH1-204ENST00000375290 KRTAP19-6Q3LI70 58 aa3.09□□□□□ -1.92
PTCH1-204ENST00000375290 PCLOQ9Y6V0 5065 aa3.08□□□□□ -1.92
PTCH1-204ENST00000375290 PRM1P04553 51 aa3.05□□□□□ -1.92
PTCH1-204ENST00000375290 KIAA1109Q2LD37 5005 aa3.04□□□□□ -1.92
PTCH1-204ENST00000375290 KMT2CQ8NEZ4 4911 aaKnown RBP3.03□□□□□ -1.92
PTCH1-204ENST00000375290 KRTAP19-7Q3SYF9 63 aa2.98□□□□□ -1.93
PTCH1-204ENST00000375290 HERC2O95714 4834 aa2.97□□□□□ -1.93
PTCH1-204ENST00000375290 KRTAP17-1Q9BYP8 105 aa2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 96.2 ms