RNA–Protein interactions for RNA: ENST00000374695.7

HSPG2-203, Transcript of heparan sulfate proteoglycan 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HSPG2, Length 14,327 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2-203ENST00000374695 DNAH2Q9P225 4427 aa3.85□□□□□ -1.79
HSPG2-203ENST00000374695 HUWE1Q7Z6Z7 4374 aaKnown RBP3.85□□□□□ -1.79
HSPG2-203ENST00000374695 KRTAP3-1Q9BYR8 98 aa3.84□□□□□ -1.79
HSPG2-203ENST00000374695 DNAH6Q9C0G6 4158 aa3.79□□□□□ -1.8
HSPG2-203ENST00000374695 KMT2AQ03164 3969 aa3.78□□□□□ -1.8
HSPG2-203ENST00000374695 KRTAP3-2Q9BYR7 98 aa3.74□□□□□ -1.81
HSPG2-203ENST00000374695 KRTAP12-3P60328 96 aa3.72□□□□□ -1.81
HSPG2-203ENST00000374695 FRAS1Q86XX4 4008 aa3.72□□□□□ -1.81
HSPG2-203ENST00000374695 DNAH10Q8IVF4 4471 aa3.72□□□□□ -1.81
HSPG2-203ENST00000374695 PRKDCP78527 4128 aaKnown RBP3.71□□□□□ -1.82
HSPG2-203ENST00000374695 FLGP20930 4061 aaPredicted RBP3.69□□□□□ -1.82
HSPG2-203ENST00000374695 DNAH11Q96DT5 4516 aa3.67□□□□□ -1.82
HSPG2-203ENST00000374695 VPS13BQ7Z7G8 4022 aa3.67□□□□□ -1.82
HSPG2-203ENST00000374695 CRCT1Q9UGL9 99 aa3.66□□□□□ -1.82
HSPG2-203ENST00000374695 DNAH9Q9NYC9 4486 aa3.64□□□□□ -1.83
HSPG2-203ENST00000374695 KRTAP3-3Q9BYR6 98 aa3.62□□□□□ -1.83
HSPG2-203ENST00000374695 KRTAP19-4Q3LI73 84 aa3.62□□□□□ -1.83
HSPG2-203ENST00000374695 VPS13DQ5THJ4 4388 aa3.59□□□□□ -1.83
HSPG2-203ENST00000374695 PLECQ15149 4684 aaKnown RBP3.59□□□□□ -1.84
HSPG2-203ENST00000374695 LCE3AQ5TA76 89 aa3.55□□□□□ -1.84
HSPG2-203ENST00000374695 KRTAP10-5P60370 271 aa3.54□□□□□ -1.84
HSPG2-203ENST00000374695 DNAH8Q96JB1 4490 aa3.54□□□□□ -1.84
HSPG2-203ENST00000374695 MT1HL1P0DM35 61 aa3.49□□□□□ -1.85
HSPG2-203ENST00000374695 KRTAP8-1Q8IUC2 63 aa3.47□□□□□ -1.85
HSPG2-203ENST00000374695 FAT1Q14517 4588 aa3.46□□□□□ -1.86
HSPG2-203ENST00000374695 DNAH17Q9UFH2 4485 aa3.45□□□□□ -1.86
HSPG2-203ENST00000374695 MYCBP2O75592 4640 aa3.44□□□□□ -1.86
HSPG2-203ENST00000374695 APOBP04114 4563 aaKnown RBP3.44□□□□□ -1.86
HSPG2-203ENST00000374695 DNHD1Q96M86 4753 aa3.42□□□□□ -1.86
HSPG2-203ENST00000374695 PKHD1P08F94 4074 aa3.4□□□□□ -1.87
HSPG2-203ENST00000374695 STARD9Q9P2P6 4700 aa3.39□□□□□ -1.87
HSPG2-203ENST00000374695 LRP1BQ9NZR2 4599 aa3.38□□□□□ -1.87
HSPG2-203ENST00000374695 FAT2Q9NYQ8 4349 aa3.38□□□□□ -1.87
HSPG2-203ENST00000374695 DYNC2H1Q8NCM8 4307 aaKnown RBP3.37□□□□□ -1.87
HSPG2-203ENST00000374695 DNAH5Q8TE73 4624 aa3.37□□□□□ -1.87
HSPG2-203ENST00000374695 KRTAP10-4P60372 401 aaPredicted RBP3.33□□□□□ -1.88
HSPG2-203ENST00000374695 PKHD1L1Q86WI1 4243 aa3.29□□□□□ -1.88
HSPG2-203ENST00000374695 SACSQ9NZJ4 4579 aa3.28□□□□□ -1.88
HSPG2-203ENST00000374695 KRTAP10-7P60409 375 aaPredicted RBP3.28□□□□□ -1.88
HSPG2-203ENST00000374695 DYNC1H1Q14204 4646 aaKnown RBP3.28□□□□□ -1.88
HSPG2-203ENST00000374695 LORP23490 312 aaPredicted RBP3.26□□□□□ -1.89
HSPG2-203ENST00000374695 SPRR5A0A1B0GTR4 108 aa3.25□□□□□ -1.89
HSPG2-203ENST00000374695 LCE3CQ5T5A8 94 aa3.23□□□□□ -1.89
HSPG2-203ENST00000374695 FAT3Q8TDW7 4589 aa3.23□□□□□ -1.89
HSPG2-203ENST00000374695 KRTAP4-5Q9BYR2 181 aa3.23□□□□□ -1.89
HSPG2-203ENST00000374695 LRP1Q07954 4544 aaKnown RBP3.23□□□□□ -1.89
HSPG2-203ENST00000374695 SPRR2GQ9BYE4 73 aa3.23□□□□□ -1.89
HSPG2-203ENST00000374695 RYR1P21817 5038 aa3.22□□□□□ -1.89
HSPG2-203ENST00000374695 KRTAP19-5Q3LI72 72 aa3.17□□□□□ -1.9
HSPG2-203ENST00000374695 MT3P25713 68 aa3.17□□□□□ -1.9
HSPG2-203ENST00000374695 HSPG2P98160 4391 aa3.15□□□□□ -1.9
HSPG2-203ENST00000374695 SPRR2FQ96RM1 72 aa3.13□□□□□ -1.91
HSPG2-203ENST00000374695 MT1HP80294 61 aa3.1□□□□□ -1.91
HSPG2-203ENST00000374695 TNXBP22105 4242 aa3.1□□□□□ -1.91
HSPG2-203ENST00000374695 PKD1P98161 4303 aa3.1□□□□□ -1.91
HSPG2-203ENST00000374695 HYDINQ4G0P3 5121 aa3.07□□□□□ -1.92
HSPG2-203ENST00000374695 LRP2P98164 4655 aa3.07□□□□□ -1.92
HSPG2-203ENST00000374695 MT2AP02795 61 aa3.06□□□□□ -1.92
HSPG2-203ENST00000374695 RYR3Q15413 4870 aa3.06□□□□□ -1.92
HSPG2-203ENST00000374695 KIAA1109Q2LD37 5005 aa3.04□□□□□ -1.92
HSPG2-203ENST00000374695 KRTAP4-1Q9BYQ7 146 aa3□□□□□ -1.93
HSPG2-203ENST00000374695 LCE3BQ5TA77 95 aa3□□□□□ -1.93
HSPG2-203ENST00000374695 KRTAP12-4P60329 112 aa2.99□□□□□ -1.93
HSPG2-203ENST00000374695 MT1FP04733 61 aa2.98□□□□□ -1.93
HSPG2-203ENST00000374695 KRTAP17-1Q9BYP8 105 aa2.96□□□□□ -1.94
HSPG2-203ENST00000374695 SPRR2EP22531 72 aa2.93□□□□□ -1.94
HSPG2-203ENST00000374695 SPRR2BP35325 72 aa2.93□□□□□ -1.94
HSPG2-203ENST00000374695 SPRR2AP35326 72 aa2.93□□□□□ -1.94
HSPG2-203ENST00000374695 KRTAP19-8Q3LI54 63 aa2.91□□□□□ -1.94
HSPG2-203ENST00000374695 LCE3DQ9BYE3 92 aa2.89□□□□□ -1.95
HSPG2-203ENST00000374695 LCE2BO14633 110 aa2.88□□□□□ -1.95
HSPG2-203ENST00000374695 HERC2O95714 4834 aa2.88□□□□□ -1.95
HSPG2-203ENST00000374695 SPRR2DP22532 72 aa2.87□□□□□ -1.95
HSPG2-203ENST00000374695 LCE3EQ5T5B0 92 aa2.86□□□□□ -1.95
HSPG2-203ENST00000374695 KMT2CQ8NEZ4 4911 aaKnown RBP2.86□□□□□ -1.95
HSPG2-203ENST00000374695 RYR2Q92736 4967 aa2.85□□□□□ -1.95
HSPG2-203ENST00000374695 LPAP08519 4548 aa2.85□□□□□ -1.95
HSPG2-203ENST00000374695 MT1GP13640 62 aa2.84□□□□□ -1.95
HSPG2-203ENST00000374695 MT1XP80297 61 aa2.83□□□□□ -1.96
HSPG2-203ENST00000374695 KRTAP19-1Q8IUB9 90 aa2.78□□□□□ -1.96
HSPG2-203ENST00000374695 PCLOQ9Y6V0 5065 aa2.72□□□□□ -1.97
HSPG2-203ENST00000374695 MT1LQ93083 61 aa2.72□□□□□ -1.97
HSPG2-203ENST00000374695 LCE2CQ5TA81 110 aa2.7□□□□□ -1.98
HSPG2-203ENST00000374695 HERC1Q15751 4861 aa2.7□□□□□ -1.98
HSPG2-203ENST00000374695 UBR4Q5T4S7 5183 aa2.69□□□□□ -1.98
HSPG2-203ENST00000374695 KRTAP19-3Q7Z4W3 81 aa2.69□□□□□ -1.98
HSPG2-203ENST00000374695 MUC17Q685J3 4493 aa2.68□□□□□ -1.98
HSPG2-203ENST00000374695 MT1BP07438 61 aa2.66□□□□□ -1.98
HSPG2-203ENST00000374695 PRM1P04553 51 aa2.63□□□□□ -1.99
HSPG2-203ENST00000374695 KRTAP2-3P0C7H8 128 aa2.62□□□□□ -1.99
HSPG2-203ENST00000374695 KRTAP2-4Q9BYR9 128 aa2.62□□□□□ -1.99
HSPG2-203ENST00000374695 KRTAP2-1Q9BYU5 128 aa2.62□□□□□ -1.99
HSPG2-203ENST00000374695 LCE2DQ5TA82 110 aaPredicted RBP2.61□□□□□ -1.99
HSPG2-203ENST00000374695 KRTAP9-8Q9BYQ0 159 aa2.61□□□□□ -1.99
HSPG2-203ENST00000374695 MT1EP04732 61 aa2.61□□□□□ -1.99
HSPG2-203ENST00000374695 BIRC6Q9NR09 4857 aa2.6□□□□□ -1.99
HSPG2-203ENST00000374695 EPPK1P58107 5090 aaKnown RBP2.59□□□□□ -2
HSPG2-203ENST00000374695 KRTAP9-3Q9BYQ3 159 aa2.58□□□□□ -2
HSPG2-203ENST00000374695 MUC2Q02817 5179 aa2.57□□□□□ -2
HSPG2-203ENST00000374695 RNF213Q63HN8 5207 aa2.57□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms