RNA–Protein interactions for RNA: ENST00000371142.8

TM9SF3-201, Transcript of transmembrane 9 superfamily member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF3, Length 6,141 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3-201ENST00000371142 KRTAP8-1Q8IUC2 63 aa9.18□□□□□ -0.94
TM9SF3-201ENST00000371142 BSNQ9UPA5 3926 aa9.12□□□□□ -0.95
TM9SF3-201ENST00000371142 VPS13CQ709C8 3753 aa9.11□□□□□ -0.95
TM9SF3-201ENST00000371142 CSMD3Q7Z407 3707 aa9.01□□□□□ -0.97
TM9SF3-201ENST00000371142 KRTAP4-1Q9BYQ7 146 aa8.92□□□□□ -0.98
TM9SF3-201ENST00000371142 DNAH9Q9NYC9 4486 aa8.92□□□□□ -0.98
TM9SF3-201ENST00000371142 DNAH5Q8TE73 4624 aa8.87□□□□□ -0.99
TM9SF3-201ENST00000371142 MT1HP80294 61 aa8.85□□□□□ -0.99
TM9SF3-201ENST00000371142 DNAH1Q9P2D7 4330 aa8.81□□□□□ -1
TM9SF3-201ENST00000371142 DNAH10Q8IVF4 4471 aa8.77□□□□□ -1.01
TM9SF3-201ENST00000371142 AKAP9Q99996 3911 aa8.71□□□□□ -1.01
TM9SF3-201ENST00000371142 MT2AP02795 61 aa8.71□□□□□ -1.02
TM9SF3-201ENST00000371142 DNAH2Q9P225 4427 aa8.65□□□□□ -1.03
TM9SF3-201ENST00000371142 PLECQ15149 4684 aaKnown RBP8.61□□□□□ -1.03
TM9SF3-201ENST00000371142 SPRR2GQ9BYE4 73 aa8.6□□□□□ -1.03
TM9SF3-201ENST00000371142 DNAH11Q96DT5 4516 aa8.56□□□□□ -1.04
TM9SF3-201ENST00000371142 KRTAP19-5Q3LI72 72 aa8.55□□□□□ -1.04
TM9SF3-201ENST00000371142 MT1FP04733 61 aa8.54□□□□□ -1.04
TM9SF3-201ENST00000371142 SPRR2FQ96RM1 72 aa8.53□□□□□ -1.04
TM9SF3-201ENST00000371142 KRTAP10-7P60409 375 aaPredicted RBP8.47□□□□□ -1.05
TM9SF3-201ENST00000371142 DNAH17Q9UFH2 4485 aa8.47□□□□□ -1.05
TM9SF3-201ENST00000371142 ZNF469Q96JG9 3925 aaPredicted RBP8.46□□□□□ -1.05
TM9SF3-201ENST00000371142 VPS13DQ5THJ4 4388 aa8.4□□□□□ -1.06
TM9SF3-201ENST00000371142 FAT1Q14517 4588 aa8.4□□□□□ -1.07
TM9SF3-201ENST00000371142 LCE3CQ5T5A8 94 aa8.38□□□□□ -1.07
TM9SF3-201ENST00000371142 LRP1BQ9NZR2 4599 aa8.33□□□□□ -1.08
TM9SF3-201ENST00000371142 DNAH8Q96JB1 4490 aa8.33□□□□□ -1.08
TM9SF3-201ENST00000371142 DYNC1H1Q14204 4646 aaKnown RBP8.31□□□□□ -1.08
TM9SF3-201ENST00000371142 DNAH3Q8TD57 4116 aa8.31□□□□□ -1.08
TM9SF3-201ENST00000371142 FAT2Q9NYQ8 4349 aa8.3□□□□□ -1.08
TM9SF3-201ENST00000371142 SACSQ9NZJ4 4579 aa8.22□□□□□ -1.09
TM9SF3-201ENST00000371142 DYNC2H1Q8NCM8 4307 aaKnown RBP8.19□□□□□ -1.1
TM9SF3-201ENST00000371142 STARD9Q9P2P6 4700 aa8.17□□□□□ -1.1
TM9SF3-201ENST00000371142 ANK2Q01484 3957 aa8.14□□□□□ -1.11
TM9SF3-201ENST00000371142 DNHD1Q96M86 4753 aa8.11□□□□□ -1.11
TM9SF3-201ENST00000371142 RYR1P21817 5038 aa8.09□□□□□ -1.11
TM9SF3-201ENST00000371142 SPRR2EP22531 72 aa8.02□□□□□ -1.13
TM9SF3-201ENST00000371142 SPRR2BP35325 72 aa8.02□□□□□ -1.13
TM9SF3-201ENST00000371142 SPRR2AP35326 72 aa8.02□□□□□ -1.13
TM9SF3-201ENST00000371142 APOBP04114 4563 aaKnown RBP8.01□□□□□ -1.13
TM9SF3-201ENST00000371142 VPS13BQ7Z7G8 4022 aa8.01□□□□□ -1.13
TM9SF3-201ENST00000371142 LCE3BQ5TA77 95 aa7.95□□□□□ -1.14
TM9SF3-201ENST00000371142 KMT2AQ03164 3969 aa7.92□□□□□ -1.14
TM9SF3-201ENST00000371142 KRTAP19-4Q3LI73 84 aa7.91□□□□□ -1.14
TM9SF3-201ENST00000371142 KRTAP19-1Q8IUB9 90 aa7.91□□□□□ -1.14
TM9SF3-201ENST00000371142 KRTAP19-8Q3LI54 63 aa7.9□□□□□ -1.14
TM9SF3-201ENST00000371142 PRKDCP78527 4128 aaKnown RBP7.89□□□□□ -1.15
TM9SF3-201ENST00000371142 MT1GP13640 62 aa7.83□□□□□ -1.16
TM9SF3-201ENST00000371142 MT1XP80297 61 aa7.83□□□□□ -1.16
TM9SF3-201ENST00000371142 DNAH7Q8WXX0 4024 aa7.81□□□□□ -1.16
TM9SF3-201ENST00000371142 KRTAP17-1Q9BYP8 105 aa7.79□□□□□ -1.16
TM9SF3-201ENST00000371142 FRAS1Q86XX4 4008 aa7.77□□□□□ -1.17
TM9SF3-201ENST00000371142 SPRR2DP22532 72 aa7.75□□□□□ -1.17
TM9SF3-201ENST00000371142 FAT3Q8TDW7 4589 aa7.74□□□□□ -1.17
TM9SF3-201ENST00000371142 LYSTQ99698 3801 aa7.73□□□□□ -1.17
TM9SF3-201ENST00000371142 RYR3Q15413 4870 aa7.72□□□□□ -1.17
TM9SF3-201ENST00000371142 CMYA5Q8N3K9 4069 aa7.7□□□□□ -1.18
TM9SF3-201ENST00000371142 MT1BP07438 61 aa7.69□□□□□ -1.18
TM9SF3-201ENST00000371142 LCE2BO14633 110 aa7.67□□□□□ -1.18
TM9SF3-201ENST00000371142 KRTAP12-4P60329 112 aa7.67□□□□□ -1.18
TM9SF3-201ENST00000371142 KRTAP4-8A0A0G2JLE6 195 aa7.66□□□□□ -1.18
TM9SF3-201ENST00000371142 KRTAP4-8Q9BYQ9 185 aa7.66□□□□□ -1.18
TM9SF3-201ENST00000371142 DNAH6Q9C0G6 4158 aa7.65□□□□□ -1.18
TM9SF3-201ENST00000371142 LRP1Q07954 4544 aaKnown RBP7.64□□□□□ -1.19
TM9SF3-201ENST00000371142 KRTAP9-8Q9BYQ0 159 aa7.6□□□□□ -1.19
TM9SF3-201ENST00000371142 MYCBP2O75592 4640 aa7.58□□□□□ -1.2
TM9SF3-201ENST00000371142 KRTAP9-3Q9BYQ3 159 aa7.44□□□□□ -1.22
TM9SF3-201ENST00000371142 LCE3DQ9BYE3 92 aa7.41□□□□□ -1.22
TM9SF3-201ENST00000371142 HECTD4Q9Y4D8 3996 aa7.4□□□□□ -1.23
TM9SF3-201ENST00000371142 LCE2CQ5TA81 110 aa7.37□□□□□ -1.23
TM9SF3-201ENST00000371142 HERC1Q15751 4861 aa7.31□□□□□ -1.24
TM9SF3-201ENST00000371142 SPRR5A0A1B0GTR4 108 aa7.31□□□□□ -1.24
TM9SF3-201ENST00000371142 RYR2Q92736 4967 aa7.31□□□□□ -1.24
TM9SF3-201ENST00000371142 LCE3EQ5T5B0 92 aa7.27□□□□□ -1.25
TM9SF3-201ENST00000371142 KRTAP4-7Q9BYR0 210 aa7.26□□□□□ -1.25
TM9SF3-201ENST00000371142 KIAA1109Q2LD37 5005 aa7.25□□□□□ -1.25
TM9SF3-201ENST00000371142 PKD1P98161 4303 aa7.24□□□□□ -1.25
TM9SF3-201ENST00000371142 KRTAP19-3Q7Z4W3 81 aa7.22□□□□□ -1.25
TM9SF3-201ENST00000371142 HSPG2P98160 4391 aa7.21□□□□□ -1.25
TM9SF3-201ENST00000371142 PKHD1L1Q86WI1 4243 aa7.16□□□□□ -1.26
TM9SF3-201ENST00000371142 MT1LQ93083 61 aa7.14□□□□□ -1.27
TM9SF3-201ENST00000371142 LPAP08519 4548 aa7.13□□□□□ -1.27
TM9SF3-201ENST00000371142 LCE2DQ5TA82 110 aaPredicted RBP7.09□□□□□ -1.28
TM9SF3-201ENST00000371142 MT1EP04732 61 aa7.06□□□□□ -1.28
TM9SF3-201ENST00000371142 LRP2P98164 4655 aa7.03□□□□□ -1.28
TM9SF3-201ENST00000371142 HERC2O95714 4834 aa6.98□□□□□ -1.29
TM9SF3-201ENST00000371142 MT4P47944 62 aa6.94□□□□□ -1.3
TM9SF3-201ENST00000371142 HYDINQ4G0P3 5121 aa6.92□□□□□ -1.3
TM9SF3-201ENST00000371142 PKHD1P08F94 4074 aa6.89□□□□□ -1.31
TM9SF3-201ENST00000371142 KRTAP19-2Q3LHN2 52 aa6.89□□□□□ -1.31
TM9SF3-201ENST00000371142 LOC100996750A0A140TA64 210 aa6.89□□□□□ -1.31
TM9SF3-201ENST00000371142 PCLOQ9Y6V0 5065 aa6.88□□□□□ -1.31
TM9SF3-201ENST00000371142 MT1MQ8N339 61 aa6.88□□□□□ -1.31
TM9SF3-201ENST00000371142 BIRC6Q9NR09 4857 aa6.84□□□□□ -1.31
TM9SF3-201ENST00000371142 MT3P25713 68 aa6.82□□□□□ -1.32
TM9SF3-201ENST00000371142 PRM1P04553 51 aa6.8□□□□□ -1.32
TM9SF3-201ENST00000371142 TNXBP22105 4242 aa6.8□□□□□ -1.32
TM9SF3-201ENST00000371142 KRTAP4-3Q9BYR4 195 aa6.79□□□□□ -1.32
TM9SF3-201ENST00000371142 KMT2CQ8NEZ4 4911 aaKnown RBP6.74□□□□□ -1.33
TM9SF3-201ENST00000371142 LCE1BQ5T7P3 118 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 92.7 ms