RNA–Protein interactions for RNA: ENST00000368841.6

SNX27-202, Transcript of sorting nexin family member 27, humanhuman

TSL 1 (best)

Gene SNX27, Length 7,070 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX27-202ENST00000368841 OTOGQ6ZRI0 2925 aa7.72□□□□□ -1.17
SNX27-202ENST00000368841 COL7A1Q02388 2944 aa7.69□□□□□ -1.18
SNX27-202ENST00000368841 KRTAP8-1Q8IUC2 63 aa7.67□□□□□ -1.18
SNX27-202ENST00000368841 KRTAP10-4P60372 401 aaPredicted RBP7.65□□□□□ -1.18
SNX27-202ENST00000368841 SRRM2Q9UQ35 2752 aaKnown RBP7.62□□□□□ -1.19
SNX27-202ENST00000368841 DNAH9Q9NYC9 4486 aa7.45□□□□□ -1.22
SNX27-202ENST00000368841 ZNF469Q96JG9 3925 aaPredicted RBP7.44□□□□□ -1.22
SNX27-202ENST00000368841 DNAH1Q9P2D7 4330 aa7.43□□□□□ -1.22
SNX27-202ENST00000368841 KRTAP4-1Q9BYQ7 146 aa7.33□□□□□ -1.24
SNX27-202ENST00000368841 DNAH10Q8IVF4 4471 aa7.31□□□□□ -1.24
SNX27-202ENST00000368841 FRAS1Q86XX4 4008 aa7.31□□□□□ -1.24
SNX27-202ENST00000368841 DNAH2Q9P225 4427 aa7.3□□□□□ -1.24
SNX27-202ENST00000368841 MT1HP80294 61 aa7.27□□□□□ -1.25
SNX27-202ENST00000368841 KRTAP23-1A1A580 65 aa7.25□□□□□ -1.25
SNX27-202ENST00000368841 DNAH3Q8TD57 4116 aa7.22□□□□□ -1.25
SNX27-202ENST00000368841 SPRR2FQ96RM1 72 aa7.19□□□□□ -1.26
SNX27-202ENST00000368841 ANK2Q01484 3957 aa7.18□□□□□ -1.26
SNX27-202ENST00000368841 DNAH5Q8TE73 4624 aa7.12□□□□□ -1.27
SNX27-202ENST00000368841 KRTAP19-5Q3LI72 72 aa7.11□□□□□ -1.27
SNX27-202ENST00000368841 PLECQ15149 4684 aaKnown RBP7.09□□□□□ -1.28
SNX27-202ENST00000368841 DNAH8Q96JB1 4490 aa7.08□□□□□ -1.28
SNX27-202ENST00000368841 MT2AP02795 61 aa7.07□□□□□ -1.28
SNX27-202ENST00000368841 KRTAP10-7P60409 375 aaPredicted RBP7.05□□□□□ -1.28
SNX27-202ENST00000368841 DNAH11Q96DT5 4516 aa7.01□□□□□ -1.29
SNX27-202ENST00000368841 FAT2Q9NYQ8 4349 aa7□□□□□ -1.29
SNX27-202ENST00000368841 KMT2AQ03164 3969 aa6.99□□□□□ -1.29
SNX27-202ENST00000368841 MT1FP04733 61 aa6.99□□□□□ -1.29
SNX27-202ENST00000368841 VPS13BQ7Z7G8 4022 aa6.93□□□□□ -1.3
SNX27-202ENST00000368841 DNAH17Q9UFH2 4485 aa6.92□□□□□ -1.3
SNX27-202ENST00000368841 CMYA5Q8N3K9 4069 aa6.89□□□□□ -1.31
SNX27-202ENST00000368841 VPS13DQ5THJ4 4388 aa6.88□□□□□ -1.31
SNX27-202ENST00000368841 LCE3CQ5T5A8 94 aa6.87□□□□□ -1.31
SNX27-202ENST00000368841 STARD9Q9P2P6 4700 aa6.87□□□□□ -1.31
SNX27-202ENST00000368841 LYSTQ99698 3801 aa6.86□□□□□ -1.31
SNX27-202ENST00000368841 DNAH7Q8WXX0 4024 aa6.85□□□□□ -1.31
SNX27-202ENST00000368841 LRP1BQ9NZR2 4599 aa6.84□□□□□ -1.31
SNX27-202ENST00000368841 SPRR2GQ9BYE4 73 aa6.84□□□□□ -1.31
SNX27-202ENST00000368841 PRKDCP78527 4128 aaKnown RBP6.83□□□□□ -1.32
SNX27-202ENST00000368841 SPRR2EP22531 72 aa6.82□□□□□ -1.32
SNX27-202ENST00000368841 SPRR2BP35325 72 aa6.82□□□□□ -1.32
SNX27-202ENST00000368841 SPRR2AP35326 72 aa6.82□□□□□ -1.32
SNX27-202ENST00000368841 DYNC2H1Q8NCM8 4307 aaKnown RBP6.8□□□□□ -1.32
SNX27-202ENST00000368841 LCE3BQ5TA77 95 aa6.79□□□□□ -1.32
SNX27-202ENST00000368841 FAT1Q14517 4588 aa6.73□□□□□ -1.33
SNX27-202ENST00000368841 SACSQ9NZJ4 4579 aa6.67□□□□□ -1.34
SNX27-202ENST00000368841 DNAH6Q9C0G6 4158 aa6.66□□□□□ -1.34
SNX27-202ENST00000368841 DYNC1H1Q14204 4646 aaKnown RBP6.63□□□□□ -1.35
SNX27-202ENST00000368841 MT1GP13640 62 aa6.62□□□□□ -1.35
SNX27-202ENST00000368841 SPRR2DP22532 72 aa6.56□□□□□ -1.36
SNX27-202ENST00000368841 APOBP04114 4563 aaKnown RBP6.49□□□□□ -1.37
SNX27-202ENST00000368841 HECTD4Q9Y4D8 3996 aa6.44□□□□□ -1.38
SNX27-202ENST00000368841 KRTAP4-8A0A0G2JLE6 195 aa6.42□□□□□ -1.38
SNX27-202ENST00000368841 KRTAP4-8Q9BYQ9 185 aa6.42□□□□□ -1.38
SNX27-202ENST00000368841 LCE2BO14633 110 aa6.42□□□□□ -1.38
SNX27-202ENST00000368841 KRTAP17-1Q9BYP8 105 aa6.41□□□□□ -1.38
SNX27-202ENST00000368841 KRTAP12-4P60329 112 aa6.35□□□□□ -1.39
SNX27-202ENST00000368841 MT1XP80297 61 aa6.34□□□□□ -1.39
SNX27-202ENST00000368841 RYR1P21817 5038 aa6.34□□□□□ -1.4
SNX27-202ENST00000368841 DNHD1Q96M86 4753 aa6.33□□□□□ -1.4
SNX27-202ENST00000368841 FAT3Q8TDW7 4589 aa6.32□□□□□ -1.4
SNX27-202ENST00000368841 KRTAP19-1Q8IUB9 90 aa6.29□□□□□ -1.4
SNX27-202ENST00000368841 LPAP08519 4548 aa6.28□□□□□ -1.4
SNX27-202ENST00000368841 KRTAP19-8Q3LI54 63 aa6.19□□□□□ -1.42
SNX27-202ENST00000368841 MT1BP07438 61 aa6.17□□□□□ -1.42
SNX27-202ENST00000368841 PKD1P98161 4303 aa6.16□□□□□ -1.42
SNX27-202ENST00000368841 KRTAP4-7Q9BYR0 210 aa6.14□□□□□ -1.43
SNX27-202ENST00000368841 HSPG2P98160 4391 aa6.13□□□□□ -1.43
SNX27-202ENST00000368841 MYCBP2O75592 4640 aa6.12□□□□□ -1.43
SNX27-202ENST00000368841 KRTAP9-8Q9BYQ0 159 aa6.1□□□□□ -1.43
SNX27-202ENST00000368841 LCE3DQ9BYE3 92 aa6.1□□□□□ -1.43
SNX27-202ENST00000368841 LRP1Q07954 4544 aaKnown RBP6.1□□□□□ -1.43
SNX27-202ENST00000368841 RYR3Q15413 4870 aa6.08□□□□□ -1.44
SNX27-202ENST00000368841 PKHD1L1Q86WI1 4243 aa6.04□□□□□ -1.44
SNX27-202ENST00000368841 LCE2CQ5TA81 110 aa6.03□□□□□ -1.44
SNX27-202ENST00000368841 MT4P47944 62 aa6.02□□□□□ -1.45
SNX27-202ENST00000368841 LCE2DQ5TA82 110 aaPredicted RBP5.99□□□□□ -1.45
SNX27-202ENST00000368841 KRTAP9-3Q9BYQ3 159 aa5.96□□□□□ -1.46
SNX27-202ENST00000368841 PKHD1P08F94 4074 aa5.94□□□□□ -1.46
SNX27-202ENST00000368841 KRTAP19-4Q3LI73 84 aa5.92□□□□□ -1.46
SNX27-202ENST00000368841 LCE3EQ5T5B0 92 aa5.92□□□□□ -1.46
SNX27-202ENST00000368841 TNXBP22105 4242 aa5.9□□□□□ -1.47
SNX27-202ENST00000368841 LOC100996750A0A140TA64 210 aa5.89□□□□□ -1.47
SNX27-202ENST00000368841 KRTAP19-3Q7Z4W3 81 aa5.84□□□□□ -1.48
SNX27-202ENST00000368841 SPRR5A0A1B0GTR4 108 aa5.8□□□□□ -1.48
SNX27-202ENST00000368841 KRTAP4-3Q9BYR4 195 aa5.77□□□□□ -1.49
SNX27-202ENST00000368841 LCE1BQ5T7P3 118 aa5.77□□□□□ -1.49
SNX27-202ENST00000368841 MT1LQ93083 61 aa5.76□□□□□ -1.49
SNX27-202ENST00000368841 PRM1P04553 51 aa5.74□□□□□ -1.49
SNX27-202ENST00000368841 HYDINQ4G0P3 5121 aa5.74□□□□□ -1.49
SNX27-202ENST00000368841 MT1EP04732 61 aa5.69□□□□□ -1.5
SNX27-202ENST00000368841 LCE1DQ5T752 114 aa5.69□□□□□ -1.5
SNX27-202ENST00000368841 FLGP20930 4061 aaPredicted RBP5.68□□□□□ -1.5
SNX27-202ENST00000368841 LRP2P98164 4655 aa5.63□□□□□ -1.51
SNX27-202ENST00000368841 MT1MQ8N339 61 aa5.58□□□□□ -1.52
SNX27-202ENST00000368841 KRTAP9-2Q9BYQ4 174 aa5.55□□□□□ -1.52
SNX27-202ENST00000368841 MUC17Q685J3 4493 aa5.55□□□□□ -1.52
SNX27-202ENST00000368841 KRTAP4-9Q9BYQ8 210 aa5.53□□□□□ -1.52
SNX27-202ENST00000368841 MT3P25713 68 aa5.52□□□□□ -1.53
SNX27-202ENST00000368841 RYR2Q92736 4967 aa5.51□□□□□ -1.53
SNX27-202ENST00000368841 HERC1Q15751 4861 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 108.1 ms