RNA–Protein interactions for RNA: ENST00000358901.10

VCP-201, Transcript of valosin containing protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VCP, Length 4,370 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-201ENST00000358901 ALMS1Q8TCU4 4167 aa6.2□□□□□ -1.42
VCP-201ENST00000358901 DNAH1Q9P2D7 4330 aa6.19□□□□□ -1.42
VCP-201ENST00000358901 KRTAP4-5Q9BYR2 181 aa6.15□□□□□ -1.42
VCP-201ENST00000358901 DNAH9Q9NYC9 4486 aa6.15□□□□□ -1.43
VCP-201ENST00000358901 PLECQ15149 4684 aaKnown RBP6.13□□□□□ -1.43
VCP-201ENST00000358901 DNAH5Q8TE73 4624 aa6.11□□□□□ -1.43
VCP-201ENST00000358901 LYSTQ99698 3801 aa6.11□□□□□ -1.43
VCP-201ENST00000358901 DNAH11Q96DT5 4516 aa6.07□□□□□ -1.44
VCP-201ENST00000358901 DNAH8Q96JB1 4490 aa6.07□□□□□ -1.44
VCP-201ENST00000358901 LORP23490 312 aaPredicted RBP6.04□□□□□ -1.44
VCP-201ENST00000358901 DNAH3Q8TD57 4116 aa6□□□□□ -1.45
VCP-201ENST00000358901 DNAH17Q9UFH2 4485 aa5.97□□□□□ -1.45
VCP-201ENST00000358901 STARD9Q9P2P6 4700 aa5.96□□□□□ -1.46
VCP-201ENST00000358901 DNAH7Q8WXX0 4024 aa5.95□□□□□ -1.46
VCP-201ENST00000358901 KRTAP10-12P60413 245 aa5.94□□□□□ -1.46
VCP-201ENST00000358901 VPS13DQ5THJ4 4388 aa5.94□□□□□ -1.46
VCP-201ENST00000358901 FAT1Q14517 4588 aa5.92□□□□□ -1.46
VCP-201ENST00000358901 FRAS1Q86XX4 4008 aa5.91□□□□□ -1.46
VCP-201ENST00000358901 KRTAP12-3P60328 96 aa5.85□□□□□ -1.47
VCP-201ENST00000358901 KMT2CQ8NEZ4 4911 aaKnown RBP5.84□□□□□ -1.47
VCP-201ENST00000358901 KMT2AQ03164 3969 aa5.84□□□□□ -1.48
VCP-201ENST00000358901 LCE3AQ5TA76 89 aa5.83□□□□□ -1.48
VCP-201ENST00000358901 DYNC2H1Q8NCM8 4307 aaKnown RBP5.83□□□□□ -1.48
VCP-201ENST00000358901 DNAH2Q9P225 4427 aa5.82□□□□□ -1.48
VCP-201ENST00000358901 LCE2DQ5TA82 110 aaPredicted RBP5.82□□□□□ -1.48
VCP-201ENST00000358901 LRP1BQ9NZR2 4599 aa5.82□□□□□ -1.48
VCP-201ENST00000358901 HECTD4Q9Y4D8 3996 aa5.81□□□□□ -1.48
VCP-201ENST00000358901 KRTAP23-1A1A580 65 aa5.81□□□□□ -1.48
VCP-201ENST00000358901 INE1O15225 51 aa5.8□□□□□ -1.48
VCP-201ENST00000358901 DYNC1H1Q14204 4646 aaKnown RBP5.8□□□□□ -1.48
VCP-201ENST00000358901 RYR1P21817 5038 aa5.76□□□□□ -1.49
VCP-201ENST00000358901 KIAA1109Q2LD37 5005 aa5.76□□□□□ -1.49
VCP-201ENST00000358901 KRTAP4-1Q9BYQ7 146 aa5.76□□□□□ -1.49
VCP-201ENST00000358901 HYDINQ4G0P3 5121 aa5.72□□□□□ -1.49
VCP-201ENST00000358901 MYCBP2O75592 4640 aa5.71□□□□□ -1.5
VCP-201ENST00000358901 CRCT1Q9UGL9 99 aa5.7□□□□□ -1.5
VCP-201ENST00000358901 RYR3Q15413 4870 aa5.67□□□□□ -1.5
VCP-201ENST00000358901 SACSQ9NZJ4 4579 aa5.66□□□□□ -1.5
VCP-201ENST00000358901 DNAH6Q9C0G6 4158 aa5.65□□□□□ -1.5
VCP-201ENST00000358901 VPS13BQ7Z7G8 4022 aa5.62□□□□□ -1.51
VCP-201ENST00000358901 RYR2Q92736 4967 aa5.62□□□□□ -1.51
VCP-201ENST00000358901 APOBP04114 4563 aaKnown RBP5.57□□□□□ -1.52
VCP-201ENST00000358901 PKHD1P08F94 4074 aa5.56□□□□□ -1.52
VCP-201ENST00000358901 EPPK1P58107 5090 aaKnown RBP5.55□□□□□ -1.52
VCP-201ENST00000358901 FAT3Q8TDW7 4589 aa5.53□□□□□ -1.52
VCP-201ENST00000358901 LRP1Q07954 4544 aaKnown RBP5.52□□□□□ -1.53
VCP-201ENST00000358901 FAT2Q9NYQ8 4349 aa5.48□□□□□ -1.53
VCP-201ENST00000358901 MT1HP80294 61 aa5.48□□□□□ -1.53
VCP-201ENST00000358901 SPRR2GQ9BYE4 73 aa5.48□□□□□ -1.53
VCP-201ENST00000358901 MT2AP02795 61 aa5.47□□□□□ -1.53
VCP-201ENST00000358901 KRTAP17-1Q9BYP8 105 aa5.47□□□□□ -1.53
VCP-201ENST00000358901 HERC2O95714 4834 aa5.4□□□□□ -1.55
VCP-201ENST00000358901 MT1FP04733 61 aa5.39□□□□□ -1.55
VCP-201ENST00000358901 PKD1P98161 4303 aa5.37□□□□□ -1.55
VCP-201ENST00000358901 BIRC6Q9NR09 4857 aa5.37□□□□□ -1.55
VCP-201ENST00000358901 KRTAP8-1Q8IUC2 63 aa5.36□□□□□ -1.55
VCP-201ENST00000358901 KRTAP10-5P60370 271 aa5.34□□□□□ -1.55
VCP-201ENST00000358901 LRP2P98164 4655 aa5.28□□□□□ -1.56
VCP-201ENST00000358901 HSPG2P98160 4391 aa5.26□□□□□ -1.57
VCP-201ENST00000358901 ABCA13Q86UQ4 5058 aa5.25□□□□□ -1.57
VCP-201ENST00000358901 PKHD1L1Q86WI1 4243 aa5.24□□□□□ -1.57
VCP-201ENST00000358901 KRTAP19-1Q8IUB9 90 aa5.23□□□□□ -1.57
VCP-201ENST00000358901 KRTAP19-5Q3LI72 72 aa5.22□□□□□ -1.57
VCP-201ENST00000358901 LCE3CQ5T5A8 94 aa5.14□□□□□ -1.59
VCP-201ENST00000358901 HERC1Q15751 4861 aa5.14□□□□□ -1.59
VCP-201ENST00000358901 PCLOQ9Y6V0 5065 aa5.13□□□□□ -1.59
VCP-201ENST00000358901 KRTAP10-7P60409 375 aaPredicted RBP5.1□□□□□ -1.59
VCP-201ENST00000358901 KRTAP19-8Q3LI54 63 aa5.09□□□□□ -1.59
VCP-201ENST00000358901 LCE2BO14633 110 aa5.08□□□□□ -1.6
VCP-201ENST00000358901 LPAP08519 4548 aa5.03□□□□□ -1.6
VCP-201ENST00000358901 MT1XP80297 61 aa5.02□□□□□ -1.61
VCP-201ENST00000358901 TNXBP22105 4242 aa5.01□□□□□ -1.61
VCP-201ENST00000358901 SPRR2FQ96RM1 72 aa4.99□□□□□ -1.61
VCP-201ENST00000358901 RNF213Q63HN8 5207 aa4.98□□□□□ -1.61
VCP-201ENST00000358901 MT1BP07438 61 aa4.98□□□□□ -1.61
VCP-201ENST00000358901 KRTAP9-8Q9BYQ0 159 aa4.95□□□□□ -1.62
VCP-201ENST00000358901 UBR4Q5T4S7 5183 aa4.95□□□□□ -1.62
VCP-201ENST00000358901 LCE2CQ5TA81 110 aa4.93□□□□□ -1.62
VCP-201ENST00000358901 SPRR5A0A1B0GTR4 108 aa4.92□□□□□ -1.62
VCP-201ENST00000358901 KRTAP19-4Q3LI73 84 aa4.89□□□□□ -1.63
VCP-201ENST00000358901 MUC2Q02817 5179 aa4.87□□□□□ -1.63
VCP-201ENST00000358901 KRTAP4-8A0A0G2JLE6 195 aa4.86□□□□□ -1.63
VCP-201ENST00000358901 KRTAP4-8Q9BYQ9 185 aa4.86□□□□□ -1.63
VCP-201ENST00000358901 SYNE1Q8NF91 8797 aaKnown RBP4.84□□□□□ -1.63
VCP-201ENST00000358901 KRTAP9-3Q9BYQ3 159 aa4.8□□□□□ -1.64
VCP-201ENST00000358901 KRTAP19-2Q3LHN2 52 aa4.77□□□□□ -1.65
VCP-201ENST00000358901 MUC17Q685J3 4493 aa4.76□□□□□ -1.65
VCP-201ENST00000358901 HMCN2Q8NDA2 5059 aa4.73□□□□□ -1.65
VCP-201ENST00000358901 FSIP2Q5CZC0 6907 aa4.73□□□□□ -1.65
VCP-201ENST00000358901 MT1GP13640 62 aa4.73□□□□□ -1.65
VCP-201ENST00000358901 LCE3BQ5TA77 95 aa4.71□□□□□ -1.66
VCP-201ENST00000358901 KRTAP12-4P60329 112 aa4.7□□□□□ -1.66
VCP-201ENST00000358901 FAT4Q6V0I7 4981 aa4.69□□□□□ -1.66
VCP-201ENST00000358901 KRTAP4-7Q9BYR0 210 aa4.62□□□□□ -1.67
VCP-201ENST00000358901 LCE2AQ5TA79 106 aaPredicted RBP4.61□□□□□ -1.67
VCP-201ENST00000358901 FLGP20930 4061 aaPredicted RBP4.6□□□□□ -1.67
VCP-201ENST00000358901 SPRR2EP22531 72 aa4.56□□□□□ -1.68
VCP-201ENST00000358901 SPRR2BP35325 72 aa4.56□□□□□ -1.68
VCP-201ENST00000358901 SPRR2AP35326 72 aa4.56□□□□□ -1.68
VCP-201ENST00000358901 MT1LQ93083 61 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms