RNA–Protein interactions for RNA: ENST00000358544.6

VPS13B-203, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13B, Length 14,094 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-203ENST00000358544 FRAS1Q86XX4 4008 aa2.71□□□□□ -1.97
VPS13B-203ENST00000358544 FLGP20930 4061 aaPredicted RBP2.71□□□□□ -1.98
VPS13B-203ENST00000358544 KMT2AQ03164 3969 aa2.69□□□□□ -1.98
VPS13B-203ENST00000358544 DNAH10Q8IVF4 4471 aa2.68□□□□□ -1.98
VPS13B-203ENST00000358544 ANK3Q12955 4377 aaKnown RBP2.67□□□□□ -1.98
VPS13B-203ENST00000358544 KRTAP10-12P60413 245 aa2.64□□□□□ -1.99
VPS13B-203ENST00000358544 DNAH6Q9C0G6 4158 aa2.63□□□□□ -1.99
VPS13B-203ENST00000358544 DNAH11Q96DT5 4516 aa2.62□□□□□ -1.99
VPS13B-203ENST00000358544 KRTAP12-3P60328 96 aa2.62□□□□□ -1.99
VPS13B-203ENST00000358544 VPS13BQ7Z7G8 4022 aa2.61□□□□□ -1.99
VPS13B-203ENST00000358544 HUWE1Q7Z6Z7 4374 aaKnown RBP2.6□□□□□ -1.99
VPS13B-203ENST00000358544 CSMD3Q7Z407 3707 aa2.6□□□□□ -1.99
VPS13B-203ENST00000358544 LCE3AQ5TA76 89 aa2.59□□□□□ -1.99
VPS13B-203ENST00000358544 DNAH2Q9P225 4427 aa2.59□□□□□ -2
VPS13B-203ENST00000358544 KRTAP19-4Q3LI73 84 aa2.58□□□□□ -2
VPS13B-203ENST00000358544 RYR1P21817 5038 aa2.56□□□□□ -2
VPS13B-203ENST00000358544 LORP23490 312 aaPredicted RBP2.56□□□□□ -2
VPS13B-203ENST00000358544 DNHD1Q96M86 4753 aa2.55□□□□□ -2
VPS13B-203ENST00000358544 KRTAP10-4P60372 401 aaPredicted RBP2.55□□□□□ -2
VPS13B-203ENST00000358544 MT1HL1P0DM35 61 aa2.54□□□□□ -2
VPS13B-203ENST00000358544 PRKDCP78527 4128 aaKnown RBP2.5□□□□□ -2.01
VPS13B-203ENST00000358544 KRTAP10-5P60370 271 aa2.43□□□□□ -2.02
VPS13B-203ENST00000358544 LRP1Q07954 4544 aaKnown RBP2.43□□□□□ -2.02
VPS13B-203ENST00000358544 CRCT1Q9UGL9 99 aa2.42□□□□□ -2.02
VPS13B-203ENST00000358544 VPS13DQ5THJ4 4388 aa2.42□□□□□ -2.02
VPS13B-203ENST00000358544 PLECQ15149 4684 aaKnown RBP2.42□□□□□ -2.02
VPS13B-203ENST00000358544 DNAH9Q9NYC9 4486 aa2.4□□□□□ -2.02
VPS13B-203ENST00000358544 PKHD1P08F94 4074 aa2.4□□□□□ -2.02
VPS13B-203ENST00000358544 HYDINQ4G0P3 5121 aa2.4□□□□□ -2.03
VPS13B-203ENST00000358544 MYCBP2O75592 4640 aa2.38□□□□□ -2.03
VPS13B-203ENST00000358544 SPRR5A0A1B0GTR4 108 aa2.38□□□□□ -2.03
VPS13B-203ENST00000358544 HSPG2P98160 4391 aa2.36□□□□□ -2.03
VPS13B-203ENST00000358544 KRTAP8-1Q8IUC2 63 aa2.34□□□□□ -2.03
VPS13B-203ENST00000358544 DYNC1H1Q14204 4646 aaKnown RBP2.33□□□□□ -2.04
VPS13B-203ENST00000358544 PCLOQ9Y6V0 5065 aa2.33□□□□□ -2.04
VPS13B-203ENST00000358544 DNAH8Q96JB1 4490 aa2.33□□□□□ -2.04
VPS13B-203ENST00000358544 DNAH17Q9UFH2 4485 aa2.32□□□□□ -2.04
VPS13B-203ENST00000358544 LCE3CQ5T5A8 94 aa2.32□□□□□ -2.04
VPS13B-203ENST00000358544 DNAH5Q8TE73 4624 aa2.31□□□□□ -2.04
VPS13B-203ENST00000358544 SPRR2GQ9BYE4 73 aa2.31□□□□□ -2.04
VPS13B-203ENST00000358544 RYR3Q15413 4870 aa2.31□□□□□ -2.04
VPS13B-203ENST00000358544 KRTAP4-1Q9BYQ7 146 aa2.3□□□□□ -2.04
VPS13B-203ENST00000358544 STARD9Q9P2P6 4700 aa2.3□□□□□ -2.04
VPS13B-203ENST00000358544 UBR4Q5T4S7 5183 aa2.3□□□□□ -2.04
VPS13B-203ENST00000358544 KRTAP4-5Q9BYR2 181 aa2.3□□□□□ -2.04
VPS13B-203ENST00000358544 KRTAP19-5Q3LI72 72 aa2.3□□□□□ -2.04
VPS13B-203ENST00000358544 DYNC2H1Q8NCM8 4307 aaKnown RBP2.29□□□□□ -2.04
VPS13B-203ENST00000358544 ABCA13Q86UQ4 5058 aa2.27□□□□□ -2.05
VPS13B-203ENST00000358544 APOBP04114 4563 aaKnown RBP2.26□□□□□ -2.05
VPS13B-203ENST00000358544 PKD1P98161 4303 aa2.26□□□□□ -2.05
VPS13B-203ENST00000358544 KMT2CQ8NEZ4 4911 aaKnown RBP2.24□□□□□ -2.05
VPS13B-203ENST00000358544 MT2AP02795 61 aa2.23□□□□□ -2.05
VPS13B-203ENST00000358544 RYR2Q92736 4967 aa2.21□□□□□ -2.05
VPS13B-203ENST00000358544 MT1FP04733 61 aa2.2□□□□□ -2.06
VPS13B-203ENST00000358544 FAT2Q9NYQ8 4349 aa2.2□□□□□ -2.06
VPS13B-203ENST00000358544 FAT3Q8TDW7 4589 aa2.19□□□□□ -2.06
VPS13B-203ENST00000358544 SACSQ9NZJ4 4579 aa2.19□□□□□ -2.06
VPS13B-203ENST00000358544 KRTAP12-4P60329 112 aa2.18□□□□□ -2.06
VPS13B-203ENST00000358544 BIRC6Q9NR09 4857 aa2.18□□□□□ -2.06
VPS13B-203ENST00000358544 RNF213Q63HN8 5207 aa2.18□□□□□ -2.06
VPS13B-203ENST00000358544 EPPK1P58107 5090 aaKnown RBP2.18□□□□□ -2.06
VPS13B-203ENST00000358544 HERC2O95714 4834 aa2.17□□□□□ -2.06
VPS13B-203ENST00000358544 HERC1Q15751 4861 aa2.17□□□□□ -2.06
VPS13B-203ENST00000358544 MT1HP80294 61 aa2.16□□□□□ -2.06
VPS13B-203ENST00000358544 KRTAP10-7P60409 375 aaPredicted RBP2.15□□□□□ -2.06
VPS13B-203ENST00000358544 MT1XP80297 61 aa2.15□□□□□ -2.07
VPS13B-203ENST00000358544 LRP2P98164 4655 aa2.14□□□□□ -2.07
VPS13B-203ENST00000358544 PKHD1L1Q86WI1 4243 aa2.14□□□□□ -2.07
VPS13B-203ENST00000358544 KRTAP19-8Q3LI54 63 aa2.13□□□□□ -2.07
VPS13B-203ENST00000358544 KIAA1109Q2LD37 5005 aa2.13□□□□□ -2.07
VPS13B-203ENST00000358544 MT3P25713 68 aa2.13□□□□□ -2.07
VPS13B-203ENST00000358544 LRP1BQ9NZR2 4599 aa2.12□□□□□ -2.07
VPS13B-203ENST00000358544 MUC12Q9UKN1 5478 aa2.11□□□□□ -2.07
VPS13B-203ENST00000358544 FAT1Q14517 4588 aa2.1□□□□□ -2.07
VPS13B-203ENST00000358544 KRTAP19-1Q8IUB9 90 aa2.09□□□□□ -2.07
VPS13B-203ENST00000358544 TNXBP22105 4242 aa2.09□□□□□ -2.08
VPS13B-203ENST00000358544 LCE3BQ5TA77 95 aa2.08□□□□□ -2.08
VPS13B-203ENST00000358544 MT1BP07438 61 aa2.04□□□□□ -2.08
VPS13B-203ENST00000358544 HMCN2Q8NDA2 5059 aa2.03□□□□□ -2.09
VPS13B-203ENST00000358544 MT1GP13640 62 aa2.02□□□□□ -2.09
VPS13B-203ENST00000358544 LCE3EQ5T5B0 92 aa2.01□□□□□ -2.09
VPS13B-203ENST00000358544 SPRR2FQ96RM1 72 aa2.01□□□□□ -2.09
VPS13B-203ENST00000358544 LCE3DQ9BYE3 92 aa2□□□□□ -2.09
VPS13B-203ENST00000358544 KRTAP2-3P0C7H8 128 aa1.98□□□□□ -2.09
VPS13B-203ENST00000358544 KRTAP2-4Q9BYR9 128 aa1.98□□□□□ -2.09
VPS13B-203ENST00000358544 KRTAP2-1Q9BYU5 128 aa1.98□□□□□ -2.09
VPS13B-203ENST00000358544 MT1LQ93083 61 aa1.97□□□□□ -2.09
VPS13B-203ENST00000358544 PRM1P04553 51 aa1.95□□□□□ -2.1
VPS13B-203ENST00000358544 LPAP08519 4548 aa1.95□□□□□ -2.1
VPS13B-203ENST00000358544 KRTAP9-3Q9BYQ3 159 aa1.93□□□□□ -2.1
VPS13B-203ENST00000358544 KRTAP4-7Q9BYR0 210 aa1.93□□□□□ -2.1
VPS13B-203ENST00000358544 KRTAP4-8A0A0G2JLE6 195 aa1.93□□□□□ -2.1
VPS13B-203ENST00000358544 KRTAP4-8Q9BYQ9 185 aa1.93□□□□□ -2.1
VPS13B-203ENST00000358544 KRTAP17-1Q9BYP8 105 aa1.92□□□□□ -2.1
VPS13B-203ENST00000358544 MUC17Q685J3 4493 aa1.91□□□□□ -2.1
VPS13B-203ENST00000358544 FAT4Q6V0I7 4981 aa1.9□□□□□ -2.11
VPS13B-203ENST00000358544 KRTAP9-8Q9BYQ0 159 aa1.9□□□□□ -2.11
VPS13B-203ENST00000358544 LCE2CQ5TA81 110 aa1.89□□□□□ -2.11
VPS13B-203ENST00000358544 MT1EP04732 61 aa1.89□□□□□ -2.11
VPS13B-203ENST00000358544 KRTAP19-2Q3LHN2 52 aa1.87□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms