RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 KRTAP8-1Q8IUC2 63 aa5.94□□□□□ -1.46
CHD4-201ENST00000357008 DNAH5Q8TE73 4624 aa5.87□□□□□ -1.47
CHD4-201ENST00000357008 KRTAP4-1Q9BYQ7 146 aa5.86□□□□□ -1.47
CHD4-201ENST00000357008 DNAH10Q8IVF4 4471 aa5.84□□□□□ -1.47
CHD4-201ENST00000357008 VPS13CQ709C8 3753 aa5.83□□□□□ -1.48
CHD4-201ENST00000357008 SPRR2GQ9BYE4 73 aa5.83□□□□□ -1.48
CHD4-201ENST00000357008 CSMD3Q7Z407 3707 aa5.8□□□□□ -1.48
CHD4-201ENST00000357008 BSNQ9UPA5 3926 aa5.79□□□□□ -1.48
CHD4-201ENST00000357008 DNAH11Q96DT5 4516 aa5.79□□□□□ -1.48
CHD4-201ENST00000357008 DNAH9Q9NYC9 4486 aa5.77□□□□□ -1.49
CHD4-201ENST00000357008 MT1HP80294 61 aa5.77□□□□□ -1.49
CHD4-201ENST00000357008 MT2AP02795 61 aa5.75□□□□□ -1.49
CHD4-201ENST00000357008 PLECQ15149 4684 aaKnown RBP5.75□□□□□ -1.49
CHD4-201ENST00000357008 DNAH2Q9P225 4427 aa5.75□□□□□ -1.49
CHD4-201ENST00000357008 DNAH1Q9P2D7 4330 aa5.74□□□□□ -1.49
CHD4-201ENST00000357008 FAT1Q14517 4588 aa5.7□□□□□ -1.5
CHD4-201ENST00000357008 KRTAP19-5Q3LI72 72 aa5.65□□□□□ -1.51
CHD4-201ENST00000357008 LCE3CQ5T5A8 94 aa5.65□□□□□ -1.51
CHD4-201ENST00000357008 MT1FP04733 61 aa5.62□□□□□ -1.51
CHD4-201ENST00000357008 DNAH17Q9UFH2 4485 aa5.62□□□□□ -1.51
CHD4-201ENST00000357008 KRTAP19-4Q3LI73 84 aa5.58□□□□□ -1.52
CHD4-201ENST00000357008 VPS13DQ5THJ4 4388 aa5.54□□□□□ -1.52
CHD4-201ENST00000357008 DNAH8Q96JB1 4490 aa5.54□□□□□ -1.52
CHD4-201ENST00000357008 KRTAP10-7P60409 375 aaPredicted RBP5.51□□□□□ -1.53
CHD4-201ENST00000357008 DYNC1H1Q14204 4646 aaKnown RBP5.5□□□□□ -1.53
CHD4-201ENST00000357008 AKAP9Q99996 3911 aa5.48□□□□□ -1.53
CHD4-201ENST00000357008 SACSQ9NZJ4 4579 aa5.45□□□□□ -1.54
CHD4-201ENST00000357008 SPRR2FQ96RM1 72 aa5.45□□□□□ -1.54
CHD4-201ENST00000357008 LRP1BQ9NZR2 4599 aa5.45□□□□□ -1.54
CHD4-201ENST00000357008 ZNF469Q96JG9 3925 aaPredicted RBP5.4□□□□□ -1.55
CHD4-201ENST00000357008 KRTAP19-8Q3LI54 63 aa5.38□□□□□ -1.55
CHD4-201ENST00000357008 RYR1P21817 5038 aa5.37□□□□□ -1.55
CHD4-201ENST00000357008 DYNC2H1Q8NCM8 4307 aaKnown RBP5.36□□□□□ -1.55
CHD4-201ENST00000357008 KRTAP19-1Q8IUB9 90 aa5.36□□□□□ -1.55
CHD4-201ENST00000357008 FAT2Q9NYQ8 4349 aa5.35□□□□□ -1.55
CHD4-201ENST00000357008 DNAH3Q8TD57 4116 aa5.34□□□□□ -1.55
CHD4-201ENST00000357008 APOBP04114 4563 aaKnown RBP5.33□□□□□ -1.56
CHD4-201ENST00000357008 DNHD1Q96M86 4753 aa5.33□□□□□ -1.56
CHD4-201ENST00000357008 STARD9Q9P2P6 4700 aa5.29□□□□□ -1.56
CHD4-201ENST00000357008 SPRR5A0A1B0GTR4 108 aa5.27□□□□□ -1.57
CHD4-201ENST00000357008 MT1XP80297 61 aa5.25□□□□□ -1.57
CHD4-201ENST00000357008 ANK2Q01484 3957 aa5.22□□□□□ -1.57
CHD4-201ENST00000357008 KRTAP12-4P60329 112 aa5.2□□□□□ -1.58
CHD4-201ENST00000357008 LRP1Q07954 4544 aaKnown RBP5.18□□□□□ -1.58
CHD4-201ENST00000357008 LCE3BQ5TA77 95 aa5.18□□□□□ -1.58
CHD4-201ENST00000357008 MT1BP07438 61 aa5.15□□□□□ -1.58
CHD4-201ENST00000357008 VPS13BQ7Z7G8 4022 aa5.15□□□□□ -1.59
CHD4-201ENST00000357008 MT1GP13640 62 aa5.11□□□□□ -1.59
CHD4-201ENST00000357008 FAT3Q8TDW7 4589 aa5.11□□□□□ -1.59
CHD4-201ENST00000357008 MYCBP2O75592 4640 aa5.1□□□□□ -1.59
CHD4-201ENST00000357008 RYR3Q15413 4870 aa5.08□□□□□ -1.6
CHD4-201ENST00000357008 KRTAP9-8Q9BYQ0 159 aa5.06□□□□□ -1.6
CHD4-201ENST00000357008 SPRR2EP22531 72 aa5.05□□□□□ -1.6
CHD4-201ENST00000357008 SPRR2BP35325 72 aa5.05□□□□□ -1.6
CHD4-201ENST00000357008 SPRR2AP35326 72 aa5.05□□□□□ -1.6
CHD4-201ENST00000357008 KRTAP17-1Q9BYP8 105 aa5.04□□□□□ -1.6
CHD4-201ENST00000357008 KMT2AQ03164 3969 aa5.03□□□□□ -1.6
CHD4-201ENST00000357008 PRKDCP78527 4128 aaKnown RBP5.02□□□□□ -1.61
CHD4-201ENST00000357008 KRTAP4-8A0A0G2JLE6 195 aa5□□□□□ -1.61
CHD4-201ENST00000357008 KRTAP4-8Q9BYQ9 185 aa5□□□□□ -1.61
CHD4-201ENST00000357008 CMYA5Q8N3K9 4069 aa4.99□□□□□ -1.61
CHD4-201ENST00000357008 LYSTQ99698 3801 aa4.98□□□□□ -1.61
CHD4-201ENST00000357008 LCE3DQ9BYE3 92 aa4.98□□□□□ -1.61
CHD4-201ENST00000357008 KIAA1109Q2LD37 5005 aa4.95□□□□□ -1.62
CHD4-201ENST00000357008 DNAH7Q8WXX0 4024 aa4.95□□□□□ -1.62
CHD4-201ENST00000357008 KRTAP9-3Q9BYQ3 159 aa4.94□□□□□ -1.62
CHD4-201ENST00000357008 DNAH6Q9C0G6 4158 aa4.94□□□□□ -1.62
CHD4-201ENST00000357008 RYR2Q92736 4967 aa4.93□□□□□ -1.62
CHD4-201ENST00000357008 LCE3EQ5T5B0 92 aa4.92□□□□□ -1.62
CHD4-201ENST00000357008 LCE2BO14633 110 aa4.92□□□□□ -1.62
CHD4-201ENST00000357008 LCE2CQ5TA81 110 aa4.92□□□□□ -1.62
CHD4-201ENST00000357008 SPRR2DP22532 72 aa4.89□□□□□ -1.63
CHD4-201ENST00000357008 FRAS1Q86XX4 4008 aa4.89□□□□□ -1.63
CHD4-201ENST00000357008 HERC1Q15751 4861 aa4.88□□□□□ -1.63
CHD4-201ENST00000357008 HSPG2P98160 4391 aa4.86□□□□□ -1.63
CHD4-201ENST00000357008 PKD1P98161 4303 aa4.82□□□□□ -1.64
CHD4-201ENST00000357008 MT1LQ93083 61 aa4.81□□□□□ -1.64
CHD4-201ENST00000357008 KRTAP19-3Q7Z4W3 81 aa4.79□□□□□ -1.64
CHD4-201ENST00000357008 HECTD4Q9Y4D8 3996 aa4.79□□□□□ -1.64
CHD4-201ENST00000357008 KRTAP4-7Q9BYR0 210 aa4.77□□□□□ -1.65
CHD4-201ENST00000357008 MT1EP04732 61 aa4.73□□□□□ -1.65
CHD4-201ENST00000357008 LRP2P98164 4655 aa4.72□□□□□ -1.65
CHD4-201ENST00000357008 KRTAP19-2Q3LHN2 52 aa4.67□□□□□ -1.66
CHD4-201ENST00000357008 HERC2O95714 4834 aa4.65□□□□□ -1.66
CHD4-201ENST00000357008 PCLOQ9Y6V0 5065 aa4.6□□□□□ -1.67
CHD4-201ENST00000357008 MT1MQ8N339 61 aa4.58□□□□□ -1.68
CHD4-201ENST00000357008 PRM1P04553 51 aa4.56□□□□□ -1.68
CHD4-201ENST00000357008 MT3P25713 68 aa4.55□□□□□ -1.68
CHD4-201ENST00000357008 KMT2CQ8NEZ4 4911 aaKnown RBP4.54□□□□□ -1.68
CHD4-201ENST00000357008 MUC17Q685J3 4493 aa4.53□□□□□ -1.68
CHD4-201ENST00000357008 PKHD1L1Q86WI1 4243 aa4.53□□□□□ -1.68
CHD4-201ENST00000357008 LPAP08519 4548 aa4.49□□□□□ -1.69
CHD4-201ENST00000357008 LCE2DQ5TA82 110 aaPredicted RBP4.49□□□□□ -1.69
CHD4-201ENST00000357008 LOC100996750A0A140TA64 210 aa4.48□□□□□ -1.69
CHD4-201ENST00000357008 SYNE1Q8NF91 8797 aaKnown RBP4.47□□□□□ -1.69
CHD4-201ENST00000357008 FLGP20930 4061 aaPredicted RBP4.46□□□□□ -1.69
CHD4-201ENST00000357008 BIRC6Q9NR09 4857 aa4.46□□□□□ -1.69
CHD4-201ENST00000357008 HYDINQ4G0P3 5121 aa4.45□□□□□ -1.7
CHD4-201ENST00000357008 KRTAP19-6Q3LI70 58 aa4.42□□□□□ -1.7
CHD4-201ENST00000357008 EPPK1P58107 5090 aaKnown RBP4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 321 ms