RNA–Protein interactions for RNA: ENST00000356384.4

RXRA-201, Transcript of retinoid X receptor alpha, humanhuman

TSL 5

Gene RXRA, Length 5,770 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RXRA-201ENST00000356384 KRTAP3-2Q9BYR7 98 aa7.1□□□□□ -1.27
RXRA-201ENST00000356384 DNAH1Q9P2D7 4330 aa7.09□□□□□ -1.27
RXRA-201ENST00000356384 KRTAP10-4P60372 401 aaPredicted RBP7.09□□□□□ -1.27
RXRA-201ENST00000356384 KRTAP3-3Q9BYR6 98 aa7.06□□□□□ -1.28
RXRA-201ENST00000356384 KRTAP12-3P60328 96 aa7.05□□□□□ -1.28
RXRA-201ENST00000356384 ANK2Q01484 3957 aa7.04□□□□□ -1.28
RXRA-201ENST00000356384 CMYA5Q8N3K9 4069 aa7.02□□□□□ -1.29
RXRA-201ENST00000356384 DNAH10Q8IVF4 4471 aa7□□□□□ -1.29
RXRA-201ENST00000356384 VPS13DQ5THJ4 4388 aa6.97□□□□□ -1.29
RXRA-201ENST00000356384 LCE3AQ5TA76 89 aa6.95□□□□□ -1.3
RXRA-201ENST00000356384 STARD9Q9P2P6 4700 aa6.94□□□□□ -1.3
RXRA-201ENST00000356384 DNAH3Q8TD57 4116 aa6.9□□□□□ -1.3
RXRA-201ENST00000356384 DNHD1Q96M86 4753 aa6.9□□□□□ -1.3
RXRA-201ENST00000356384 DNAH5Q8TE73 4624 aa6.89□□□□□ -1.31
RXRA-201ENST00000356384 PRKDCP78527 4128 aaKnown RBP6.89□□□□□ -1.31
RXRA-201ENST00000356384 DNAH17Q9UFH2 4485 aa6.87□□□□□ -1.31
RXRA-201ENST00000356384 KRTAP10-5P60370 271 aa6.84□□□□□ -1.31
RXRA-201ENST00000356384 DNAH11Q96DT5 4516 aa6.83□□□□□ -1.32
RXRA-201ENST00000356384 KRTAP23-1A1A580 65 aa6.81□□□□□ -1.32
RXRA-201ENST00000356384 DNAH2Q9P225 4427 aa6.77□□□□□ -1.33
RXRA-201ENST00000356384 KMT2AQ03164 3969 aa6.77□□□□□ -1.33
RXRA-201ENST00000356384 LORP23490 312 aaPredicted RBP6.75□□□□□ -1.33
RXRA-201ENST00000356384 DYNC2H1Q8NCM8 4307 aaKnown RBP6.73□□□□□ -1.33
RXRA-201ENST00000356384 LRP1BQ9NZR2 4599 aa6.69□□□□□ -1.34
RXRA-201ENST00000356384 KRTAP8-1Q8IUC2 63 aa6.69□□□□□ -1.34
RXRA-201ENST00000356384 DYNC1H1Q14204 4646 aaKnown RBP6.68□□□□□ -1.34
RXRA-201ENST00000356384 FAT2Q9NYQ8 4349 aa6.64□□□□□ -1.35
RXRA-201ENST00000356384 LYSTQ99698 3801 aa6.63□□□□□ -1.35
RXRA-201ENST00000356384 DNAH6Q9C0G6 4158 aa6.59□□□□□ -1.35
RXRA-201ENST00000356384 DNAH8Q96JB1 4490 aa6.58□□□□□ -1.36
RXRA-201ENST00000356384 FAT1Q14517 4588 aa6.55□□□□□ -1.36
RXRA-201ENST00000356384 DNAH7Q8WXX0 4024 aa6.55□□□□□ -1.36
RXRA-201ENST00000356384 SACSQ9NZJ4 4579 aa6.5□□□□□ -1.37
RXRA-201ENST00000356384 FRAS1Q86XX4 4008 aa6.48□□□□□ -1.37
RXRA-201ENST00000356384 VPS13BQ7Z7G8 4022 aa6.48□□□□□ -1.37
RXRA-201ENST00000356384 HECTD4Q9Y4D8 3996 aa6.46□□□□□ -1.38
RXRA-201ENST00000356384 KRTAP4-1Q9BYQ7 146 aa6.38□□□□□ -1.39
RXRA-201ENST00000356384 KRTAP17-1Q9BYP8 105 aa6.37□□□□□ -1.39
RXRA-201ENST00000356384 RYR1P21817 5038 aa6.34□□□□□ -1.4
RXRA-201ENST00000356384 HYDINQ4G0P3 5121 aa6.34□□□□□ -1.4
RXRA-201ENST00000356384 MT1HP80294 61 aa6.31□□□□□ -1.4
RXRA-201ENST00000356384 APOBP04114 4563 aaKnown RBP6.3□□□□□ -1.4
RXRA-201ENST00000356384 RYR2Q92736 4967 aa6.26□□□□□ -1.41
RXRA-201ENST00000356384 SPRR2FQ96RM1 72 aa6.22□□□□□ -1.41
RXRA-201ENST00000356384 KRTAP10-7P60409 375 aaPredicted RBP6.22□□□□□ -1.41
RXRA-201ENST00000356384 RYR3Q15413 4870 aa6.2□□□□□ -1.42
RXRA-201ENST00000356384 MT2AP02795 61 aa6.2□□□□□ -1.42
RXRA-201ENST00000356384 KRTAP19-5Q3LI72 72 aa6.17□□□□□ -1.42
RXRA-201ENST00000356384 HSPG2P98160 4391 aa6.14□□□□□ -1.43
RXRA-201ENST00000356384 PKD1P98161 4303 aa6.13□□□□□ -1.43
RXRA-201ENST00000356384 PKHD1P08F94 4074 aa6.13□□□□□ -1.43
RXRA-201ENST00000356384 SPRR2GQ9BYE4 73 aa6.12□□□□□ -1.43
RXRA-201ENST00000356384 LRP1Q07954 4544 aaKnown RBP6.12□□□□□ -1.43
RXRA-201ENST00000356384 KIAA1109Q2LD37 5005 aa6.11□□□□□ -1.43
RXRA-201ENST00000356384 LCE3CQ5T5A8 94 aa6.09□□□□□ -1.43
RXRA-201ENST00000356384 MT1FP04733 61 aa6.08□□□□□ -1.44
RXRA-201ENST00000356384 FAT3Q8TDW7 4589 aa6.06□□□□□ -1.44
RXRA-201ENST00000356384 MYCBP2O75592 4640 aa6□□□□□ -1.45
RXRA-201ENST00000356384 KMT2CQ8NEZ4 4911 aaKnown RBP5.89□□□□□ -1.47
RXRA-201ENST00000356384 BIRC6Q9NR09 4857 aa5.88□□□□□ -1.47
RXRA-201ENST00000356384 TNXBP22105 4242 aa5.86□□□□□ -1.47
RXRA-201ENST00000356384 SPRR2EP22531 72 aa5.84□□□□□ -1.47
RXRA-201ENST00000356384 SPRR2BP35325 72 aa5.84□□□□□ -1.47
RXRA-201ENST00000356384 SPRR2AP35326 72 aa5.84□□□□□ -1.47
RXRA-201ENST00000356384 HERC2O95714 4834 aa5.83□□□□□ -1.48
RXRA-201ENST00000356384 PKHD1L1Q86WI1 4243 aa5.83□□□□□ -1.48
RXRA-201ENST00000356384 LCE3BQ5TA77 95 aa5.83□□□□□ -1.48
RXRA-201ENST00000356384 LPAP08519 4548 aa5.82□□□□□ -1.48
RXRA-201ENST00000356384 KRTAP19-4Q3LI73 84 aa5.79□□□□□ -1.48
RXRA-201ENST00000356384 EPPK1P58107 5090 aaKnown RBP5.7□□□□□ -1.5
RXRA-201ENST00000356384 KRTAP12-4P60329 112 aa5.69□□□□□ -1.5
RXRA-201ENST00000356384 LRP2P98164 4655 aa5.69□□□□□ -1.5
RXRA-201ENST00000356384 MT1GP13640 62 aa5.68□□□□□ -1.5
RXRA-201ENST00000356384 SPRR2DP22532 72 aa5.64□□□□□ -1.51
RXRA-201ENST00000356384 KRTAP19-8Q3LI54 63 aa5.6□□□□□ -1.51
RXRA-201ENST00000356384 LCE2CQ5TA81 110 aa5.6□□□□□ -1.51
RXRA-201ENST00000356384 KRTAP19-1Q8IUB9 90 aa5.58□□□□□ -1.52
RXRA-201ENST00000356384 HERC1Q15751 4861 aa5.58□□□□□ -1.52
RXRA-201ENST00000356384 LCE2BO14633 110 aa5.55□□□□□ -1.52
RXRA-201ENST00000356384 MT1XP80297 61 aa5.55□□□□□ -1.52
RXRA-201ENST00000356384 KRTAP9-8Q9BYQ0 159 aa5.53□□□□□ -1.52
RXRA-201ENST00000356384 ABCA13Q86UQ4 5058 aa5.51□□□□□ -1.53
RXRA-201ENST00000356384 KRTAP4-8A0A0G2JLE6 195 aa5.51□□□□□ -1.53
RXRA-201ENST00000356384 KRTAP4-8Q9BYQ9 185 aa5.51□□□□□ -1.53
RXRA-201ENST00000356384 LCE3DQ9BYE3 92 aa5.48□□□□□ -1.53
RXRA-201ENST00000356384 MUC17Q685J3 4493 aa5.45□□□□□ -1.54
RXRA-201ENST00000356384 PCLOQ9Y6V0 5065 aa5.44□□□□□ -1.54
RXRA-201ENST00000356384 KRTAP19-2Q3LHN2 52 aa5.43□□□□□ -1.54
RXRA-201ENST00000356384 MT1BP07438 61 aa5.42□□□□□ -1.54
RXRA-201ENST00000356384 LCE3EQ5T5B0 92 aa5.39□□□□□ -1.55
RXRA-201ENST00000356384 KRTAP9-3Q9BYQ3 159 aa5.38□□□□□ -1.55
RXRA-201ENST00000356384 FLGP20930 4061 aaPredicted RBP5.3□□□□□ -1.56
RXRA-201ENST00000356384 SPRR5A0A1B0GTR4 108 aa5.28□□□□□ -1.56
RXRA-201ENST00000356384 KRTAP4-7Q9BYR0 210 aa5.2□□□□□ -1.58
RXRA-201ENST00000356384 LCE2DQ5TA82 110 aaPredicted RBP5.18□□□□□ -1.58
RXRA-201ENST00000356384 KRTAP19-3Q7Z4W3 81 aa5.18□□□□□ -1.58
RXRA-201ENST00000356384 MT4P47944 62 aa5.12□□□□□ -1.59
RXRA-201ENST00000356384 MT1LQ93083 61 aa5.1□□□□□ -1.59
RXRA-201ENST00000356384 RNF213Q63HN8 5207 aa5.09□□□□□ -1.59
RXRA-201ENST00000356384 FAT4Q6V0I7 4981 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms