RNA–Protein interactions for RNA: ENST00000355238.10

SYNCRIP-201, Transcript of synaptotagmin binding cytoplasmic RNA interacting protein, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SYNCRIP, Length 6,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNCRIP-201ENST00000355238 KRTAP10-5P60370 271 aa5.18□□□□□ -1.58
SYNCRIP-201ENST00000355238 HUWE1Q7Z6Z7 4374 aaKnown RBP5.12□□□□□ -1.59
SYNCRIP-201ENST00000355238 KRTAP4-5Q9BYR2 181 aa5.02□□□□□ -1.61
SYNCRIP-201ENST00000355238 ALMS1Q8TCU4 4167 aa4.97□□□□□ -1.61
SYNCRIP-201ENST00000355238 KRTAP8-1Q8IUC2 63 aa4.96□□□□□ -1.62
SYNCRIP-201ENST00000355238 SPRR2GQ9BYE4 73 aa4.94□□□□□ -1.62
SYNCRIP-201ENST00000355238 DNHD1Q96M86 4753 aa4.94□□□□□ -1.62
SYNCRIP-201ENST00000355238 DNAH2Q9P225 4427 aa4.91□□□□□ -1.62
SYNCRIP-201ENST00000355238 DNAH11Q96DT5 4516 aa4.91□□□□□ -1.62
SYNCRIP-201ENST00000355238 DNAH10Q8IVF4 4471 aa4.91□□□□□ -1.62
SYNCRIP-201ENST00000355238 LCE3CQ5T5A8 94 aa4.87□□□□□ -1.63
SYNCRIP-201ENST00000355238 KRTAP4-1Q9BYQ7 146 aa4.86□□□□□ -1.63
SYNCRIP-201ENST00000355238 ANK2Q01484 3957 aa4.85□□□□□ -1.63
SYNCRIP-201ENST00000355238 KRTAP19-4Q3LI73 84 aa4.85□□□□□ -1.63
SYNCRIP-201ENST00000355238 KRTAP19-5Q3LI72 72 aa4.8□□□□□ -1.64
SYNCRIP-201ENST00000355238 DNAH5Q8TE73 4624 aa4.79□□□□□ -1.64
SYNCRIP-201ENST00000355238 MT2AP02795 61 aa4.79□□□□□ -1.64
SYNCRIP-201ENST00000355238 DNAH1Q9P2D7 4330 aa4.78□□□□□ -1.64
SYNCRIP-201ENST00000355238 MT1HP80294 61 aa4.78□□□□□ -1.64
SYNCRIP-201ENST00000355238 DNAH9Q9NYC9 4486 aa4.76□□□□□ -1.65
SYNCRIP-201ENST00000355238 PRKDCP78527 4128 aaKnown RBP4.76□□□□□ -1.65
SYNCRIP-201ENST00000355238 CSMD3Q7Z407 3707 aa4.74□□□□□ -1.65
SYNCRIP-201ENST00000355238 DNAH8Q96JB1 4490 aa4.73□□□□□ -1.65
SYNCRIP-201ENST00000355238 DNAH3Q8TD57 4116 aa4.73□□□□□ -1.65
SYNCRIP-201ENST00000355238 CMYA5Q8N3K9 4069 aa4.72□□□□□ -1.65
SYNCRIP-201ENST00000355238 DNAH17Q9UFH2 4485 aa4.71□□□□□ -1.66
SYNCRIP-201ENST00000355238 FAT1Q14517 4588 aa4.69□□□□□ -1.66
SYNCRIP-201ENST00000355238 SPRR5A0A1B0GTR4 108 aa4.69□□□□□ -1.66
SYNCRIP-201ENST00000355238 MT1FP04733 61 aa4.67□□□□□ -1.66
SYNCRIP-201ENST00000355238 PLECQ15149 4684 aaKnown RBP4.66□□□□□ -1.66
SYNCRIP-201ENST00000355238 STARD9Q9P2P6 4700 aa4.64□□□□□ -1.67
SYNCRIP-201ENST00000355238 KRTAP10-7P60409 375 aaPredicted RBP4.63□□□□□ -1.67
SYNCRIP-201ENST00000355238 VPS13DQ5THJ4 4388 aa4.61□□□□□ -1.67
SYNCRIP-201ENST00000355238 SACSQ9NZJ4 4579 aa4.57□□□□□ -1.68
SYNCRIP-201ENST00000355238 LYSTQ99698 3801 aa4.55□□□□□ -1.68
SYNCRIP-201ENST00000355238 KRTAP19-8Q3LI54 63 aa4.54□□□□□ -1.68
SYNCRIP-201ENST00000355238 KRTAP12-4P60329 112 aa4.53□□□□□ -1.68
SYNCRIP-201ENST00000355238 KMT2AQ03164 3969 aa4.51□□□□□ -1.69
SYNCRIP-201ENST00000355238 KRTAP19-1Q8IUB9 90 aa4.5□□□□□ -1.69
SYNCRIP-201ENST00000355238 SPRR2FQ96RM1 72 aa4.5□□□□□ -1.69
SYNCRIP-201ENST00000355238 DNAH7Q8WXX0 4024 aa4.49□□□□□ -1.69
SYNCRIP-201ENST00000355238 DYNC2H1Q8NCM8 4307 aaKnown RBP4.48□□□□□ -1.69
SYNCRIP-201ENST00000355238 DYNC1H1Q14204 4646 aaKnown RBP4.47□□□□□ -1.69
SYNCRIP-201ENST00000355238 LRP1BQ9NZR2 4599 aa4.47□□□□□ -1.69
SYNCRIP-201ENST00000355238 MT1XP80297 61 aa4.43□□□□□ -1.7
SYNCRIP-201ENST00000355238 FAT2Q9NYQ8 4349 aa4.43□□□□□ -1.7
SYNCRIP-201ENST00000355238 LCE3BQ5TA77 95 aa4.41□□□□□ -1.7
SYNCRIP-201ENST00000355238 KMT2CQ8NEZ4 4911 aaKnown RBP4.41□□□□□ -1.7
SYNCRIP-201ENST00000355238 HYDINQ4G0P3 5121 aa4.4□□□□□ -1.7
SYNCRIP-201ENST00000355238 APOBP04114 4563 aaKnown RBP4.39□□□□□ -1.71
SYNCRIP-201ENST00000355238 KRTAP9-6A0A140TA67 174 aa4.38□□□□□ -1.71
SYNCRIP-201ENST00000355238 SPRR2EP22531 72 aa4.37□□□□□ -1.71
SYNCRIP-201ENST00000355238 SPRR2BP35325 72 aa4.37□□□□□ -1.71
SYNCRIP-201ENST00000355238 SPRR2AP35326 72 aa4.37□□□□□ -1.71
SYNCRIP-201ENST00000355238 LRP1Q07954 4544 aaKnown RBP4.34□□□□□ -1.71
SYNCRIP-201ENST00000355238 RYR2Q92736 4967 aa4.34□□□□□ -1.72
SYNCRIP-201ENST00000355238 KIAA1109Q2LD37 5005 aa4.32□□□□□ -1.72
SYNCRIP-201ENST00000355238 MT1BP07438 61 aa4.32□□□□□ -1.72
SYNCRIP-201ENST00000355238 MT1GP13640 62 aa4.32□□□□□ -1.72
SYNCRIP-201ENST00000355238 DNAH6Q9C0G6 4158 aa4.3□□□□□ -1.72
SYNCRIP-201ENST00000355238 VPS13BQ7Z7G8 4022 aa4.3□□□□□ -1.72
SYNCRIP-201ENST00000355238 LCE3DQ9BYE3 92 aa4.3□□□□□ -1.72
SYNCRIP-201ENST00000355238 HECTD4Q9Y4D8 3996 aa4.29□□□□□ -1.72
SYNCRIP-201ENST00000355238 PKHD1P08F94 4074 aa4.28□□□□□ -1.72
SYNCRIP-201ENST00000355238 SPRR2DP22532 72 aa4.28□□□□□ -1.72
SYNCRIP-201ENST00000355238 LCE3EQ5T5B0 92 aa4.26□□□□□ -1.73
SYNCRIP-201ENST00000355238 RYR1P21817 5038 aa4.26□□□□□ -1.73
SYNCRIP-201ENST00000355238 RYR3Q15413 4870 aa4.25□□□□□ -1.73
SYNCRIP-201ENST00000355238 FRAS1Q86XX4 4008 aa4.23□□□□□ -1.73
SYNCRIP-201ENST00000355238 FAT3Q8TDW7 4589 aa4.21□□□□□ -1.74
SYNCRIP-201ENST00000355238 PKD1P98161 4303 aa4.2□□□□□ -1.74
SYNCRIP-201ENST00000355238 KRTAP9-8Q9BYQ0 159 aa4.19□□□□□ -1.74
SYNCRIP-201ENST00000355238 KRTAP17-1Q9BYP8 105 aa4.18□□□□□ -1.74
SYNCRIP-201ENST00000355238 KRTAP20-1Q3LI63 56 aa4.18□□□□□ -1.74
SYNCRIP-201ENST00000355238 KRTAP4-8A0A0G2JLE6 195 aa4.16□□□□□ -1.74
SYNCRIP-201ENST00000355238 KRTAP4-8Q9BYQ9 185 aa4.16□□□□□ -1.74
SYNCRIP-201ENST00000355238 KRTAP9-2Q9BYQ4 174 aa4.15□□□□□ -1.75
SYNCRIP-201ENST00000355238 EPPK1P58107 5090 aaKnown RBP4.14□□□□□ -1.75
SYNCRIP-201ENST00000355238 MYCBP2O75592 4640 aa4.13□□□□□ -1.75
SYNCRIP-201ENST00000355238 MT1LQ93083 61 aa4.11□□□□□ -1.75
SYNCRIP-201ENST00000355238 HSPG2P98160 4391 aa4.1□□□□□ -1.75
SYNCRIP-201ENST00000355238 KRTAP9-3Q9BYQ3 159 aa4.09□□□□□ -1.75
SYNCRIP-201ENST00000355238 LCE2BO14633 110 aa4.07□□□□□ -1.76
SYNCRIP-201ENST00000355238 LCE2CQ5TA81 110 aa4.05□□□□□ -1.76
SYNCRIP-201ENST00000355238 HERC1Q15751 4861 aa4.03□□□□□ -1.76
SYNCRIP-201ENST00000355238 HERC2O95714 4834 aa4.03□□□□□ -1.76
SYNCRIP-201ENST00000355238 KRTAP19-3Q7Z4W3 81 aa4.03□□□□□ -1.76
SYNCRIP-201ENST00000355238 KRTAP4-7Q9BYR0 210 aa4.01□□□□□ -1.77
SYNCRIP-201ENST00000355238 BIRC6Q9NR09 4857 aa4.01□□□□□ -1.77
SYNCRIP-201ENST00000355238 PRM1P04553 51 aa4□□□□□ -1.77
SYNCRIP-201ENST00000355238 MT1EP04732 61 aa3.99□□□□□ -1.77
SYNCRIP-201ENST00000355238 ABCA13Q86UQ4 5058 aa3.97□□□□□ -1.77
SYNCRIP-201ENST00000355238 KRTAP9-7A8MTY7 169 aa3.96□□□□□ -1.77
SYNCRIP-201ENST00000355238 LCE2DQ5TA82 110 aaPredicted RBP3.92□□□□□ -1.78
SYNCRIP-201ENST00000355238 KRTAP19-2Q3LHN2 52 aa3.87□□□□□ -1.79
SYNCRIP-201ENST00000355238 MT3P25713 68 aa3.86□□□□□ -1.79
SYNCRIP-201ENST00000355238 LRP2P98164 4655 aa3.86□□□□□ -1.79
SYNCRIP-201ENST00000355238 MT1MQ8N339 61 aa3.86□□□□□ -1.79
SYNCRIP-201ENST00000355238 PKHD1L1Q86WI1 4243 aa3.84□□□□□ -1.8
SYNCRIP-201ENST00000355238 PCLOQ9Y6V0 5065 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 101.2 ms