RNA–Protein interactions for RNA: ENST00000355072.9

HTT-201, Transcript of huntingtin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HTT, Length 13,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HTT-201ENST00000355072 CSMD3Q7Z407 3707 aa3.43□□□□□ -1.86
HTT-201ENST00000355072 HECTD4Q9Y4D8 3996 aa3.35□□□□□ -1.87
HTT-201ENST00000355072 DNAH7Q8WXX0 4024 aa3.34□□□□□ -1.88
HTT-201ENST00000355072 MT3P25713 68 aa3.32□□□□□ -1.88
HTT-201ENST00000355072 LCE3AQ5TA76 89 aa3.31□□□□□ -1.88
HTT-201ENST00000355072 ANK2Q01484 3957 aa3.3□□□□□ -1.88
HTT-201ENST00000355072 SPRR2GQ9BYE4 73 aa3.29□□□□□ -1.88
HTT-201ENST00000355072 FRAS1Q86XX4 4008 aa3.29□□□□□ -1.88
HTT-201ENST00000355072 MT1HL1P0DM35 61 aa3.25□□□□□ -1.89
HTT-201ENST00000355072 KMT2AQ03164 3969 aa3.25□□□□□ -1.89
HTT-201ENST00000355072 KRTAP10-4P60372 401 aaPredicted RBP3.24□□□□□ -1.89
HTT-201ENST00000355072 HUWE1Q7Z6Z7 4374 aaKnown RBP3.22□□□□□ -1.89
HTT-201ENST00000355072 VPS13BQ7Z7G8 4022 aa3.19□□□□□ -1.9
HTT-201ENST00000355072 FLGP20930 4061 aaPredicted RBP3.18□□□□□ -1.9
HTT-201ENST00000355072 LCE3CQ5T5A8 94 aa3.18□□□□□ -1.9
HTT-201ENST00000355072 KRTAP8-1Q8IUC2 63 aa3.15□□□□□ -1.9
HTT-201ENST00000355072 LORP23490 312 aaPredicted RBP3.15□□□□□ -1.91
HTT-201ENST00000355072 DNAH6Q9C0G6 4158 aa3.14□□□□□ -1.91
HTT-201ENST00000355072 KRTAP10-5P60370 271 aa3.14□□□□□ -1.91
HTT-201ENST00000355072 SPRR5A0A1B0GTR4 108 aa3.12□□□□□ -1.91
HTT-201ENST00000355072 DNAH2Q9P225 4427 aa3.08□□□□□ -1.92
HTT-201ENST00000355072 KRTAP10-7P60409 375 aaPredicted RBP3.07□□□□□ -1.92
HTT-201ENST00000355072 CRCT1Q9UGL9 99 aa3.07□□□□□ -1.92
HTT-201ENST00000355072 PKHD1P08F94 4074 aa3.04□□□□□ -1.92
HTT-201ENST00000355072 PRKDCP78527 4128 aaKnown RBP3□□□□□ -1.93
HTT-201ENST00000355072 DNAH10Q8IVF4 4471 aa2.97□□□□□ -1.93
HTT-201ENST00000355072 DNAH11Q96DT5 4516 aa2.88□□□□□ -1.95
HTT-201ENST00000355072 MT1HP80294 61 aa2.87□□□□□ -1.95
HTT-201ENST00000355072 KRTAP19-5Q3LI72 72 aa2.87□□□□□ -1.95
HTT-201ENST00000355072 KRTAP19-8Q3LI54 63 aa2.86□□□□□ -1.95
HTT-201ENST00000355072 KRTAP12-4P60329 112 aa2.86□□□□□ -1.95
HTT-201ENST00000355072 VPS13DQ5THJ4 4388 aa2.83□□□□□ -1.96
HTT-201ENST00000355072 LRP1Q07954 4544 aaKnown RBP2.8□□□□□ -1.96
HTT-201ENST00000355072 LCE3DQ9BYE3 92 aa2.8□□□□□ -1.96
HTT-201ENST00000355072 MT2AP02795 61 aa2.8□□□□□ -1.96
HTT-201ENST00000355072 MT1GP13640 62 aa2.79□□□□□ -1.96
HTT-201ENST00000355072 PKHD1L1Q86WI1 4243 aa2.78□□□□□ -1.97
HTT-201ENST00000355072 LCE3EQ5T5B0 92 aa2.76□□□□□ -1.97
HTT-201ENST00000355072 SPRR2FQ96RM1 72 aa2.76□□□□□ -1.97
HTT-201ENST00000355072 DNAH17Q9UFH2 4485 aa2.74□□□□□ -1.97
HTT-201ENST00000355072 MT1LQ93083 61 aa2.72□□□□□ -1.97
HTT-201ENST00000355072 ANK3Q12955 4377 aaKnown RBP2.71□□□□□ -1.98
HTT-201ENST00000355072 SACSQ9NZJ4 4579 aa2.71□□□□□ -1.98
HTT-201ENST00000355072 MT1FP04733 61 aa2.7□□□□□ -1.98
HTT-201ENST00000355072 MT1XP80297 61 aa2.68□□□□□ -1.98
HTT-201ENST00000355072 KRTAP19-1Q8IUB9 90 aa2.68□□□□□ -1.98
HTT-201ENST00000355072 MT1EP04732 61 aa2.66□□□□□ -1.98
HTT-201ENST00000355072 DYNC2H1Q8NCM8 4307 aaKnown RBP2.66□□□□□ -1.98
HTT-201ENST00000355072 PLECQ15149 4684 aaKnown RBP2.65□□□□□ -1.98
HTT-201ENST00000355072 LCE2BO14633 110 aa2.65□□□□□ -1.99
HTT-201ENST00000355072 DNAH8Q96JB1 4490 aa2.64□□□□□ -1.99
HTT-201ENST00000355072 FAT2Q9NYQ8 4349 aa2.64□□□□□ -1.99
HTT-201ENST00000355072 LCE3BQ5TA77 95 aa2.63□□□□□ -1.99
HTT-201ENST00000355072 KRTAP4-5Q9BYR2 181 aa2.63□□□□□ -1.99
HTT-201ENST00000355072 HSPG2P98160 4391 aa2.62□□□□□ -1.99
HTT-201ENST00000355072 SPRR2AP35326 72 aa2.6□□□□□ -1.99
HTT-201ENST00000355072 PKD1P98161 4303 aa2.6□□□□□ -1.99
HTT-201ENST00000355072 KRTAP4-1Q9BYQ7 146 aa2.6□□□□□ -1.99
HTT-201ENST00000355072 DYNC1H1Q14204 4646 aaKnown RBP2.6□□□□□ -1.99
HTT-201ENST00000355072 SPRR2EP22531 72 aa2.58□□□□□ -2
HTT-201ENST00000355072 SPRR2BP35325 72 aa2.58□□□□□ -2
HTT-201ENST00000355072 FAT3Q8TDW7 4589 aa2.56□□□□□ -2
HTT-201ENST00000355072 MT1AP04731 61 aa2.55□□□□□ -2
HTT-201ENST00000355072 SPRR2DP22532 72 aa2.55□□□□□ -2
HTT-201ENST00000355072 KRTAP19-3Q7Z4W3 81 aa2.55□□□□□ -2
HTT-201ENST00000355072 DNAH9Q9NYC9 4486 aa2.54□□□□□ -2
HTT-201ENST00000355072 KRTAP2-3P0C7H8 128 aa2.51□□□□□ -2.01
HTT-201ENST00000355072 KRTAP2-4Q9BYR9 128 aa2.51□□□□□ -2.01
HTT-201ENST00000355072 KRTAP2-1Q9BYU5 128 aa2.51□□□□□ -2.01
HTT-201ENST00000355072 RYR1P21817 5038 aa2.51□□□□□ -2.01
HTT-201ENST00000355072 DNAH5Q8TE73 4624 aa2.5□□□□□ -2.01
HTT-201ENST00000355072 TNXBP22105 4242 aa2.5□□□□□ -2.01
HTT-201ENST00000355072 APOBP04114 4563 aaKnown RBP2.49□□□□□ -2.01
HTT-201ENST00000355072 MT1MQ8N339 61 aa2.49□□□□□ -2.01
HTT-201ENST00000355072 KRTAP9-8Q9BYQ0 159 aa2.48□□□□□ -2.01
HTT-201ENST00000355072 MT1BP07438 61 aa2.48□□□□□ -2.01
HTT-201ENST00000355072 MYCBP2O75592 4640 aa2.46□□□□□ -2.02
HTT-201ENST00000355072 STARD9Q9P2P6 4700 aa2.46□□□□□ -2.02
HTT-201ENST00000355072 LCE2CQ5TA81 110 aa2.44□□□□□ -2.02
HTT-201ENST00000355072 PRM1P04553 51 aa2.43□□□□□ -2.02
HTT-201ENST00000355072 KRTAP9-3Q9BYQ3 159 aa2.43□□□□□ -2.02
HTT-201ENST00000355072 DNHD1Q96M86 4753 aa2.37□□□□□ -2.03
HTT-201ENST00000355072 LCE2DQ5TA82 110 aaPredicted RBP2.35□□□□□ -2.03
HTT-201ENST00000355072 FAT1Q14517 4588 aa2.34□□□□□ -2.04
HTT-201ENST00000355072 KRTAP19-6Q3LI70 58 aa2.34□□□□□ -2.04
HTT-201ENST00000355072 BIRC6Q9NR09 4857 aa2.31□□□□□ -2.04
HTT-201ENST00000355072 LRP1BQ9NZR2 4599 aa2.3□□□□□ -2.04
HTT-201ENST00000355072 PCLOQ9Y6V0 5065 aa2.29□□□□□ -2.04
HTT-201ENST00000355072 LCE1AQ5T7P2 110 aa2.25□□□□□ -2.05
HTT-201ENST00000355072 KRTAP4-8A0A0G2JLE6 195 aa2.25□□□□□ -2.05
HTT-201ENST00000355072 KRTAP4-8Q9BYQ9 185 aa2.25□□□□□ -2.05
HTT-201ENST00000355072 LRP2P98164 4655 aa2.23□□□□□ -2.05
HTT-201ENST00000355072 RYR3Q15413 4870 aa2.22□□□□□ -2.05
HTT-201ENST00000355072 KRTAP19-2Q3LHN2 52 aa2.18□□□□□ -2.06
HTT-201ENST00000355072 HYDINQ4G0P3 5121 aa2.18□□□□□ -2.06
HTT-201ENST00000355072 LCE1DQ5T752 114 aa2.16□□□□□ -2.06
HTT-201ENST00000355072 HMCN2Q8NDA2 5059 aa2.16□□□□□ -2.06
HTT-201ENST00000355072 HERC2O95714 4834 aa2.16□□□□□ -2.06
HTT-201ENST00000355072 KRTAP19-7Q3SYF9 63 aa2.16□□□□□ -2.06
HTT-201ENST00000355072 HERC1Q15751 4861 aa2.13□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 95 ms