RNA–Protein interactions for RNA: ENST00000347635.8

NUP50-201, Transcript of nucleoporin 50, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP50, Length 5,233 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-201ENST00000347635 DNAH17Q9UFH2 4485 aa7.02□□□□□ -1.29
NUP50-201ENST00000347635 VPS13DQ5THJ4 4388 aa7.01□□□□□ -1.29
NUP50-201ENST00000347635 KRTAP4-5Q9BYR2 181 aa6.94□□□□□ -1.3
NUP50-201ENST00000347635 DNAH8Q96JB1 4490 aa6.94□□□□□ -1.3
NUP50-201ENST00000347635 KRTAP15-1Q3LI76 137 aa6.93□□□□□ -1.3
NUP50-201ENST00000347635 STARD9Q9P2P6 4700 aa6.88□□□□□ -1.31
NUP50-201ENST00000347635 CMYA5Q8N3K9 4069 aa6.88□□□□□ -1.31
NUP50-201ENST00000347635 DNAH11Q96DT5 4516 aa6.87□□□□□ -1.31
NUP50-201ENST00000347635 DNAH2Q9P225 4427 aa6.87□□□□□ -1.31
NUP50-201ENST00000347635 ANK2Q01484 3957 aa6.84□□□□□ -1.31
NUP50-201ENST00000347635 DNAH5Q8TE73 4624 aa6.81□□□□□ -1.32
NUP50-201ENST00000347635 DYNC2H1Q8NCM8 4307 aaKnown RBP6.79□□□□□ -1.32
NUP50-201ENST00000347635 LYSTQ99698 3801 aa6.72□□□□□ -1.33
NUP50-201ENST00000347635 FRAS1Q86XX4 4008 aa6.71□□□□□ -1.34
NUP50-201ENST00000347635 KMT2AQ03164 3969 aa6.69□□□□□ -1.34
NUP50-201ENST00000347635 DNHD1Q96M86 4753 aa6.69□□□□□ -1.34
NUP50-201ENST00000347635 LRP1BQ9NZR2 4599 aa6.68□□□□□ -1.34
NUP50-201ENST00000347635 HECTD4Q9Y4D8 3996 aa6.64□□□□□ -1.35
NUP50-201ENST00000347635 SACSQ9NZJ4 4579 aa6.62□□□□□ -1.35
NUP50-201ENST00000347635 PRKDCP78527 4128 aaKnown RBP6.61□□□□□ -1.35
NUP50-201ENST00000347635 DNAH7Q8WXX0 4024 aa6.6□□□□□ -1.35
NUP50-201ENST00000347635 DYNC1H1Q14204 4646 aaKnown RBP6.57□□□□□ -1.36
NUP50-201ENST00000347635 VPS13BQ7Z7G8 4022 aa6.56□□□□□ -1.36
NUP50-201ENST00000347635 LORP23490 312 aaPredicted RBP6.55□□□□□ -1.36
NUP50-201ENST00000347635 DNAH6Q9C0G6 4158 aa6.53□□□□□ -1.36
NUP50-201ENST00000347635 FAT2Q9NYQ8 4349 aa6.49□□□□□ -1.37
NUP50-201ENST00000347635 FAT1Q14517 4588 aa6.48□□□□□ -1.37
NUP50-201ENST00000347635 KRTAP23-1A1A580 65 aa6.4□□□□□ -1.38
NUP50-201ENST00000347635 KRTAP4-1Q9BYQ7 146 aa6.29□□□□□ -1.4
NUP50-201ENST00000347635 APOBP04114 4563 aaKnown RBP6.27□□□□□ -1.41
NUP50-201ENST00000347635 LCE3AQ5TA76 89 aa6.22□□□□□ -1.41
NUP50-201ENST00000347635 FAT3Q8TDW7 4589 aa6.2□□□□□ -1.42
NUP50-201ENST00000347635 KRTAP10-12P60413 245 aa6.2□□□□□ -1.42
NUP50-201ENST00000347635 MT1HP80294 61 aa6.19□□□□□ -1.42
NUP50-201ENST00000347635 RYR1P21817 5038 aa6.19□□□□□ -1.42
NUP50-201ENST00000347635 HYDINQ4G0P3 5121 aa6.19□□□□□ -1.42
NUP50-201ENST00000347635 INE1O15225 51 aa6.18□□□□□ -1.42
NUP50-201ENST00000347635 PKD1P98161 4303 aa6.16□□□□□ -1.42
NUP50-201ENST00000347635 KRTAP12-3P60328 96 aa6.11□□□□□ -1.43
NUP50-201ENST00000347635 KRTAP17-1Q9BYP8 105 aa6.1□□□□□ -1.43
NUP50-201ENST00000347635 RYR2Q92736 4967 aa6.1□□□□□ -1.43
NUP50-201ENST00000347635 LRP1Q07954 4544 aaKnown RBP6.07□□□□□ -1.44
NUP50-201ENST00000347635 MYCBP2O75592 4640 aa6.07□□□□□ -1.44
NUP50-201ENST00000347635 RYR3Q15413 4870 aa6.06□□□□□ -1.44
NUP50-201ENST00000347635 PKHD1L1Q86WI1 4243 aa6.05□□□□□ -1.44
NUP50-201ENST00000347635 MT2AP02795 61 aa6.04□□□□□ -1.44
NUP50-201ENST00000347635 KIAA1109Q2LD37 5005 aa6.04□□□□□ -1.44
NUP50-201ENST00000347635 PKHD1P08F94 4074 aa6.04□□□□□ -1.44
NUP50-201ENST00000347635 SPRR2GQ9BYE4 73 aa6.02□□□□□ -1.45
NUP50-201ENST00000347635 BIRC6Q9NR09 4857 aa5.97□□□□□ -1.45
NUP50-201ENST00000347635 MT1FP04733 61 aa5.9□□□□□ -1.47
NUP50-201ENST00000347635 HSPG2P98160 4391 aa5.89□□□□□ -1.47
NUP50-201ENST00000347635 TNXBP22105 4242 aa5.87□□□□□ -1.47
NUP50-201ENST00000347635 KRTAP8-1Q8IUC2 63 aa5.82□□□□□ -1.48
NUP50-201ENST00000347635 HERC2O95714 4834 aa5.79□□□□□ -1.48
NUP50-201ENST00000347635 LRP2P98164 4655 aa5.78□□□□□ -1.48
NUP50-201ENST00000347635 HERC1Q15751 4861 aa5.74□□□□□ -1.49
NUP50-201ENST00000347635 KRTAP19-8Q3LI54 63 aa5.71□□□□□ -1.49
NUP50-201ENST00000347635 KRTAP19-1Q8IUB9 90 aa5.71□□□□□ -1.49
NUP50-201ENST00000347635 KMT2CQ8NEZ4 4911 aaKnown RBP5.71□□□□□ -1.5
NUP50-201ENST00000347635 LPAP08519 4548 aa5.69□□□□□ -1.5
NUP50-201ENST00000347635 SPRR5A0A1B0GTR4 108 aa5.67□□□□□ -1.5
NUP50-201ENST00000347635 LCE2CQ5TA81 110 aa5.63□□□□□ -1.51
NUP50-201ENST00000347635 KRTAP9-8Q9BYQ0 159 aa5.59□□□□□ -1.51
NUP50-201ENST00000347635 KRTAP19-4Q3LI73 84 aa5.59□□□□□ -1.51
NUP50-201ENST00000347635 KRTAP19-2Q3LHN2 52 aa5.58□□□□□ -1.52
NUP50-201ENST00000347635 CRCT1Q9UGL9 99 aa5.57□□□□□ -1.52
NUP50-201ENST00000347635 KRTAP19-5Q3LI72 72 aa5.57□□□□□ -1.52
NUP50-201ENST00000347635 LCE3CQ5T5A8 94 aa5.54□□□□□ -1.52
NUP50-201ENST00000347635 KRTAP10-7P60409 375 aaPredicted RBP5.52□□□□□ -1.53
NUP50-201ENST00000347635 MT1XP80297 61 aa5.51□□□□□ -1.53
NUP50-201ENST00000347635 KRTAP10-5P60370 271 aa5.5□□□□□ -1.53
NUP50-201ENST00000347635 KRTAP9-3Q9BYQ3 159 aa5.47□□□□□ -1.53
NUP50-201ENST00000347635 MT1BP07438 61 aa5.46□□□□□ -1.54
NUP50-201ENST00000347635 PCLOQ9Y6V0 5065 aa5.44□□□□□ -1.54
NUP50-201ENST00000347635 SPRR2FQ96RM1 72 aa5.43□□□□□ -1.54
NUP50-201ENST00000347635 MUC17Q685J3 4493 aa5.37□□□□□ -1.55
NUP50-201ENST00000347635 EPPK1P58107 5090 aaKnown RBP5.36□□□□□ -1.55
NUP50-201ENST00000347635 FLGP20930 4061 aaPredicted RBP5.36□□□□□ -1.55
NUP50-201ENST00000347635 ABCA13Q86UQ4 5058 aa5.32□□□□□ -1.56
NUP50-201ENST00000347635 LCE2BO14633 110 aa5.18□□□□□ -1.58
NUP50-201ENST00000347635 LCE2AQ5TA79 106 aaPredicted RBP5.17□□□□□ -1.58
NUP50-201ENST00000347635 SPRR2EP22531 72 aa5.15□□□□□ -1.58
NUP50-201ENST00000347635 SPRR2BP35325 72 aa5.15□□□□□ -1.58
NUP50-201ENST00000347635 SPRR2AP35326 72 aa5.15□□□□□ -1.58
NUP50-201ENST00000347635 KRTAP4-8A0A0G2JLE6 195 aa5.14□□□□□ -1.59
NUP50-201ENST00000347635 KRTAP4-8Q9BYQ9 185 aa5.14□□□□□ -1.59
NUP50-201ENST00000347635 LCE2DQ5TA82 110 aaPredicted RBP5.12□□□□□ -1.59
NUP50-201ENST00000347635 KRTAP19-6Q3LI70 58 aa5.08□□□□□ -1.6
NUP50-201ENST00000347635 MT1GP13640 62 aa5.08□□□□□ -1.6
NUP50-201ENST00000347635 SPRR2DP22532 72 aa5□□□□□ -1.61
NUP50-201ENST00000347635 KRTAP9-2Q9BYQ4 174 aa5□□□□□ -1.61
NUP50-201ENST00000347635 RNF213Q63HN8 5207 aa4.99□□□□□ -1.61
NUP50-201ENST00000347635 FAT4Q6V0I7 4981 aa4.96□□□□□ -1.61
NUP50-201ENST00000347635 HMCN2Q8NDA2 5059 aa4.96□□□□□ -1.61
NUP50-201ENST00000347635 KRTAP4-7Q9BYR0 210 aa4.94□□□□□ -1.62
NUP50-201ENST00000347635 KRTAP19-3Q7Z4W3 81 aa4.91□□□□□ -1.62
NUP50-201ENST00000347635 MT1LQ93083 61 aa4.91□□□□□ -1.62
NUP50-201ENST00000347635 KRTAP12-4P60329 112 aa4.88□□□□□ -1.63
NUP50-201ENST00000347635 MT1EP04732 61 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms