RNA–Protein interactions for RNA: ENST00000339430.9

LITAF-201, Transcript of lipopolysaccharide induced TNF factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LITAF, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LITAF-201ENST00000339430 KRTAP3-1Q9BYR8 98 aa8.69□□□□□ -1.02
LITAF-201ENST00000339430 SPATA8Q6RVD6 105 aa8.69□□□□□ -1.02
LITAF-201ENST00000339430 J3QL48 77 aa8.68□□□□□ -1.02
LITAF-201ENST00000339430 SEC61GP60059 68 aa8.63□□□□□ -1.03
LITAF-201ENST00000339430 PCLOQ9Y6V0 5065 aa8.61□□□□□ -1.03
LITAF-201ENST00000339430 COX6B2Q6YFQ2 88 aa8.53□□□□□ -1.04
LITAF-201ENST00000339430 RBM12B-AS1Q9P1G2 102 aa8.51□□□□□ -1.05
LITAF-201ENST00000339430 ADM2Q7Z4H4 148 aa8.49□□□□□ -1.05
LITAF-201ENST00000339430 PRAC1Q96KF2 57 aa8.48□□□□□ -1.05
LITAF-201ENST00000339430 H0YAA0 97 aa8.47□□□□□ -1.05
LITAF-201ENST00000339430 RPL37P61927 97 aaKnown RBP8.46□□□□□ -1.06
LITAF-201ENST00000339430 XP32Q5T750 250 aa8.46□□□□□ -1.06
LITAF-201ENST00000339430 TPRXLQ17RH7 258 aa8.44□□□□□ -1.06
LITAF-201ENST00000339430 A0A1B0GU33 70 aa8.43□□□□□ -1.06
LITAF-201ENST00000339430 H1FX-AS1Q4G0G2 97 aa8.4□□□□□ -1.06
LITAF-201ENST00000339430 LPAP08519 4548 aa8.39□□□□□ -1.07
LITAF-201ENST00000339430 HERC1Q15751 4861 aa8.37□□□□□ -1.07
LITAF-201ENST00000339430 KRTAP3-3Q9BYR6 98 aa8.32□□□□□ -1.08
LITAF-201ENST00000339430 LRP2P98164 4655 aa8.31□□□□□ -1.08
LITAF-201ENST00000339430 S4R3F8 94 aa8.26□□□□□ -1.09
LITAF-201ENST00000339430 CSAG1Q6PB30 78 aa8.22□□□□□ -1.09
LITAF-201ENST00000339430 KRTAP10-6P60371 365 aaPredicted RBP8.22□□□□□ -1.09
LITAF-201ENST00000339430 HMCN2Q8NDA2 5059 aa8.21□□□□□ -1.1
LITAF-201ENST00000339430 KRTAP3-2Q9BYR7 98 aa8.17□□□□□ -1.1
LITAF-201ENST00000339430 KRTAP13-4Q3LI77 160 aa8.15□□□□□ -1.1
LITAF-201ENST00000339430 SEC61BP60468 96 aaKnown RBP8.15□□□□□ -1.1
LITAF-201ENST00000339430 A0A0D9SG42 100 aa8.12□□□□□ -1.11
LITAF-201ENST00000339430 K7ERS5 55 aa8.11□□□□□ -1.11
LITAF-201ENST00000339430 P0C880 135 aa8.11□□□□□ -1.11
LITAF-201ENST00000339430 LINC01554Q52M75 96 aa8.09□□□□□ -1.11
LITAF-201ENST00000339430 KRTAP4-1Q9BYQ7 146 aa8.03□□□□□ -1.12
LITAF-201ENST00000339430 CRIPTQ9P021 101 aa8.02□□□□□ -1.13
LITAF-201ENST00000339430 MUC17Q685J3 4493 aa7.98□□□□□ -1.13
LITAF-201ENST00000339430 KRTAP25-1Q3LHN0 102 aa7.97□□□□□ -1.13
LITAF-201ENST00000339430 MUC2Q02817 5179 aa7.97□□□□□ -1.13
LITAF-201ENST00000339430 UBR4Q5T4S7 5183 aa7.95□□□□□ -1.14
LITAF-201ENST00000339430 ROMO1P60602 79 aa7.92□□□□□ -1.14
LITAF-201ENST00000339430 KRTAP12-2P59991 146 aa7.88□□□□□ -1.15
LITAF-201ENST00000339430 SPINT4Q6UDR6 99 aa7.84□□□□□ -1.15
LITAF-201ENST00000339430 KRTAP12-1P59990 96 aa7.81□□□□□ -1.16
LITAF-201ENST00000339430 RNF213Q63HN8 5207 aa7.8□□□□□ -1.16
LITAF-201ENST00000339430 M0QZ58 72 aa7.77□□□□□ -1.17
LITAF-201ENST00000339430 KRTAP19-2Q3LHN2 52 aa7.76□□□□□ -1.17
LITAF-201ENST00000339430 C10orf95Q9H7T3 257 aa7.72□□□□□ -1.17
LITAF-201ENST00000339430 R4GN34 69 aa7.67□□□□□ -1.18
LITAF-201ENST00000339430 LORP23490 312 aaPredicted RBP7.64□□□□□ -1.19
LITAF-201ENST00000339430 LCE2CQ5TA81 110 aa7.63□□□□□ -1.19
LITAF-201ENST00000339430 FAT4Q6V0I7 4981 aa7.61□□□□□ -1.19
LITAF-201ENST00000339430 FLGP20930 4061 aaPredicted RBP7.56□□□□□ -1.2
LITAF-201ENST00000339430 MT1HP80294 61 aa7.48□□□□□ -1.21
LITAF-201ENST00000339430 H3BS24 57 aa7.47□□□□□ -1.21
LITAF-201ENST00000339430 M0R2T5 61 aa7.44□□□□□ -1.22
LITAF-201ENST00000339430 CAMK2N1Q7Z7J9 78 aa7.28□□□□□ -1.24
LITAF-201ENST00000339430 KRTAP15-1Q3LI76 137 aa7.24□□□□□ -1.25
LITAF-201ENST00000339430 LCE2AQ5TA79 106 aaPredicted RBP7.23□□□□□ -1.25
LITAF-201ENST00000339430 KRTAP9-8Q9BYQ0 159 aa7.19□□□□□ -1.26
LITAF-201ENST00000339430 MT2AP02795 61 aa7.17□□□□□ -1.26
LITAF-201ENST00000339430 LCE2DQ5TA82 110 aaPredicted RBP7.14□□□□□ -1.27
LITAF-201ENST00000339430 MT1FP04733 61 aa7.13□□□□□ -1.27
LITAF-201ENST00000339430 KRTAP10-10P60014 251 aa7.12□□□□□ -1.27
LITAF-201ENST00000339430 NDUFAF8A1L188 74 aa7.06□□□□□ -1.28
LITAF-201ENST00000339430 PLAC4Q8WY50 150 aa7.01□□□□□ -1.29
LITAF-201ENST00000339430 PP632Q6XCG6 107 aa6.99□□□□□ -1.29
LITAF-201ENST00000339430 KRTAP19-1Q8IUB9 90 aa6.97□□□□□ -1.29
LITAF-201ENST00000339430 SPRR2GQ9BYE4 73 aa6.97□□□□□ -1.29
LITAF-201ENST00000339430 TNP1P09430 55 aa6.96□□□□□ -1.29
LITAF-201ENST00000339430 KRTAP9-3Q9BYQ3 159 aa6.93□□□□□ -1.3
LITAF-201ENST00000339430 KRTAP19-8Q3LI54 63 aa6.78□□□□□ -1.32
LITAF-201ENST00000339430 LCE2BO14633 110 aa6.77□□□□□ -1.33
LITAF-201ENST00000339430 KRTAP23-1A1A580 65 aa6.75□□□□□ -1.33
LITAF-201ENST00000339430 MT1BP07438 61 aa6.72□□□□□ -1.33
LITAF-201ENST00000339430 LCE3AQ5TA76 89 aa6.65□□□□□ -1.35
LITAF-201ENST00000339430 LUZP6Q538Z0 58 aa6.64□□□□□ -1.35
LITAF-201ENST00000339430 USH2AO75445 5202 aa6.63□□□□□ -1.35
LITAF-201ENST00000339430 A0A0A0MQY5 61 aa6.61□□□□□ -1.35
LITAF-201ENST00000339430 KRTAP10-5P60370 271 aa6.57□□□□□ -1.36
LITAF-201ENST00000339430 MT1XP80297 61 aa6.56□□□□□ -1.36
LITAF-201ENST00000339430 FSIP2Q5CZC0 6907 aa6.53□□□□□ -1.36
LITAF-201ENST00000339430 SPRR5A0A1B0GTR4 108 aa6.49□□□□□ -1.37
LITAF-201ENST00000339430 SSPOA2VEC9 5147 aa6.43□□□□□ -1.38
LITAF-201ENST00000339430 KRTAP8-1Q8IUC2 63 aa6.42□□□□□ -1.38
LITAF-201ENST00000339430 PRO2289Q9P1D8 64 aa6.41□□□□□ -1.38
LITAF-201ENST00000339430 KRTAP10-12P60413 245 aa6.4□□□□□ -1.38
LITAF-201ENST00000339430 KRTAP10-7P60409 375 aaPredicted RBP6.4□□□□□ -1.39
LITAF-201ENST00000339430 KRTAP9-2Q9BYQ4 174 aa6.39□□□□□ -1.39
LITAF-201ENST00000339430 KRTAP19-6Q3LI70 58 aa6.33□□□□□ -1.4
LITAF-201ENST00000339430 KRTAP12-3P60328 96 aa6.31□□□□□ -1.4
LITAF-201ENST00000339430 KMT2DO14686 5537 aa6.21□□□□□ -1.42
LITAF-201ENST00000339430 FCGBPQ9Y6R7 5405 aaPredicted RBP6.15□□□□□ -1.42
LITAF-201ENST00000339430 CRCT1Q9UGL9 99 aa6.15□□□□□ -1.42
LITAF-201ENST00000339430 KRTAP19-5Q3LI72 72 aa6.1□□□□□ -1.43
LITAF-201ENST00000339430 KRTAP4-8A0A0G2JLE6 195 aa6.06□□□□□ -1.44
LITAF-201ENST00000339430 KRTAP4-8Q9BYQ9 185 aa6.06□□□□□ -1.44
LITAF-201ENST00000339430 LCE3CQ5T5A8 94 aa5.93□□□□□ -1.46
LITAF-201ENST00000339430 KRTAP9-6A0A140TA67 174 aa5.91□□□□□ -1.46
LITAF-201ENST00000339430 MACF1Q9UPN3 7388 aaKnown RBP5.9□□□□□ -1.46
LITAF-201ENST00000339430 KRTAP19-7Q3SYF9 63 aa5.84□□□□□ -1.47
LITAF-201ENST00000339430 SYNE2Q8WXH0 6885 aaKnown RBP5.78□□□□□ -1.48
LITAF-201ENST00000339430 KRTAP4-7Q9BYR0 210 aa5.76□□□□□ -1.49
LITAF-201ENST00000339430 KRTAP9-6A8MVA2 160 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 136.5 ms