RNA–Protein interactions for RNA: ENST00000332853.8

VSTM4-202, Transcript of V-set and transmembrane domain containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VSTM4, Length 6,392 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSTM4-202ENST00000332853 VPS13DQ5THJ4 4388 aa6.09□□□□□ -1.43
VSTM4-202ENST00000332853 KRTAP3-3Q9BYR6 98 aa6.09□□□□□ -1.44
VSTM4-202ENST00000332853 STARD9Q9P2P6 4700 aa6.08□□□□□ -1.44
VSTM4-202ENST00000332853 DNAH3Q8TD57 4116 aa6.07□□□□□ -1.44
VSTM4-202ENST00000332853 CMYA5Q8N3K9 4069 aa6.06□□□□□ -1.44
VSTM4-202ENST00000332853 DNAH17Q9UFH2 4485 aa6.04□□□□□ -1.44
VSTM4-202ENST00000332853 KMT2AQ03164 3969 aa6.02□□□□□ -1.45
VSTM4-202ENST00000332853 KRTAP3-2Q9BYR7 98 aa6.02□□□□□ -1.45
VSTM4-202ENST00000332853 DNAH2Q9P225 4427 aa6□□□□□ -1.45
VSTM4-202ENST00000332853 PRKDCP78527 4128 aaKnown RBP5.99□□□□□ -1.45
VSTM4-202ENST00000332853 ANK2Q01484 3957 aa5.99□□□□□ -1.45
VSTM4-202ENST00000332853 DNHD1Q96M86 4753 aa5.97□□□□□ -1.45
VSTM4-202ENST00000332853 LYSTQ99698 3801 aa5.93□□□□□ -1.46
VSTM4-202ENST00000332853 LRP1BQ9NZR2 4599 aa5.91□□□□□ -1.46
VSTM4-202ENST00000332853 FRAS1Q86XX4 4008 aa5.9□□□□□ -1.47
VSTM4-202ENST00000332853 DNAH8Q96JB1 4490 aa5.89□□□□□ -1.47
VSTM4-202ENST00000332853 DYNC1H1Q14204 4646 aaKnown RBP5.86□□□□□ -1.47
VSTM4-202ENST00000332853 DYNC2H1Q8NCM8 4307 aaKnown RBP5.85□□□□□ -1.47
VSTM4-202ENST00000332853 FAT1Q14517 4588 aa5.84□□□□□ -1.47
VSTM4-202ENST00000332853 FAT2Q9NYQ8 4349 aa5.83□□□□□ -1.48
VSTM4-202ENST00000332853 VPS13BQ7Z7G8 4022 aa5.8□□□□□ -1.48
VSTM4-202ENST00000332853 LORP23490 312 aaPredicted RBP5.8□□□□□ -1.48
VSTM4-202ENST00000332853 DNAH7Q8WXX0 4024 aa5.79□□□□□ -1.48
VSTM4-202ENST00000332853 KRTAP15-1Q3LI76 137 aa5.74□□□□□ -1.49
VSTM4-202ENST00000332853 SACSQ9NZJ4 4579 aa5.74□□□□□ -1.49
VSTM4-202ENST00000332853 DNAH6Q9C0G6 4158 aa5.72□□□□□ -1.49
VSTM4-202ENST00000332853 HECTD4Q9Y4D8 3996 aa5.71□□□□□ -1.5
VSTM4-202ENST00000332853 KRTAP4-1Q9BYQ7 146 aa5.69□□□□□ -1.5
VSTM4-202ENST00000332853 KRTAP10-12P60413 245 aa5.62□□□□□ -1.51
VSTM4-202ENST00000332853 RYR1P21817 5038 aa5.57□□□□□ -1.52
VSTM4-202ENST00000332853 APOBP04114 4563 aaKnown RBP5.55□□□□□ -1.52
VSTM4-202ENST00000332853 LCE3AQ5TA76 89 aa5.54□□□□□ -1.52
VSTM4-202ENST00000332853 KRTAP17-1Q9BYP8 105 aa5.52□□□□□ -1.53
VSTM4-202ENST00000332853 CRCT1Q9UGL9 99 aa5.52□□□□□ -1.53
VSTM4-202ENST00000332853 HYDINQ4G0P3 5121 aa5.48□□□□□ -1.53
VSTM4-202ENST00000332853 KRTAP12-3P60328 96 aa5.46□□□□□ -1.54
VSTM4-202ENST00000332853 MYCBP2O75592 4640 aa5.45□□□□□ -1.54
VSTM4-202ENST00000332853 LRP1Q07954 4544 aaKnown RBP5.45□□□□□ -1.54
VSTM4-202ENST00000332853 MT1HP80294 61 aa5.45□□□□□ -1.54
VSTM4-202ENST00000332853 PKHD1P08F94 4074 aa5.4□□□□□ -1.55
VSTM4-202ENST00000332853 RYR3Q15413 4870 aa5.37□□□□□ -1.55
VSTM4-202ENST00000332853 FAT3Q8TDW7 4589 aa5.35□□□□□ -1.55
VSTM4-202ENST00000332853 HSPG2P98160 4391 aa5.33□□□□□ -1.56
VSTM4-202ENST00000332853 MT2AP02795 61 aa5.33□□□□□ -1.56
VSTM4-202ENST00000332853 KRTAP23-1A1A580 65 aa5.33□□□□□ -1.56
VSTM4-202ENST00000332853 PKD1P98161 4303 aa5.29□□□□□ -1.56
VSTM4-202ENST00000332853 KIAA1109Q2LD37 5005 aa5.29□□□□□ -1.56
VSTM4-202ENST00000332853 MT1FP04733 61 aa5.28□□□□□ -1.56
VSTM4-202ENST00000332853 RYR2Q92736 4967 aa5.28□□□□□ -1.56
VSTM4-202ENST00000332853 SPRR2GQ9BYE4 73 aa5.24□□□□□ -1.57
VSTM4-202ENST00000332853 LPAP08519 4548 aa5.2□□□□□ -1.58
VSTM4-202ENST00000332853 KRTAP8-1Q8IUC2 63 aa5.18□□□□□ -1.58
VSTM4-202ENST00000332853 INE1O15225 51 aa5.17□□□□□ -1.58
VSTM4-202ENST00000332853 TNXBP22105 4242 aa5.12□□□□□ -1.59
VSTM4-202ENST00000332853 LRP2P98164 4655 aa5.11□□□□□ -1.59
VSTM4-202ENST00000332853 PKHD1L1Q86WI1 4243 aa5.08□□□□□ -1.6
VSTM4-202ENST00000332853 HERC2O95714 4834 aa5.03□□□□□ -1.6
VSTM4-202ENST00000332853 KMT2CQ8NEZ4 4911 aaKnown RBP5.02□□□□□ -1.61
VSTM4-202ENST00000332853 KRTAP19-5Q3LI72 72 aa5.02□□□□□ -1.61
VSTM4-202ENST00000332853 KRTAP19-1Q8IUB9 90 aa5□□□□□ -1.61
VSTM4-202ENST00000332853 KRTAP10-5P60370 271 aa4.99□□□□□ -1.61
VSTM4-202ENST00000332853 KRTAP10-7P60409 375 aaPredicted RBP4.95□□□□□ -1.62
VSTM4-202ENST00000332853 LCE2DQ5TA82 110 aaPredicted RBP4.9□□□□□ -1.63
VSTM4-202ENST00000332853 LCE2CQ5TA81 110 aa4.89□□□□□ -1.63
VSTM4-202ENST00000332853 BIRC6Q9NR09 4857 aa4.89□□□□□ -1.63
VSTM4-202ENST00000332853 KRTAP9-8Q9BYQ0 159 aa4.89□□□□□ -1.63
VSTM4-202ENST00000332853 KRTAP19-8Q3LI54 63 aa4.88□□□□□ -1.63
VSTM4-202ENST00000332853 SPRR2FQ96RM1 72 aa4.87□□□□□ -1.63
VSTM4-202ENST00000332853 MT1XP80297 61 aa4.85□□□□□ -1.63
VSTM4-202ENST00000332853 LCE3CQ5T5A8 94 aa4.85□□□□□ -1.63
VSTM4-202ENST00000332853 MT1BP07438 61 aa4.83□□□□□ -1.64
VSTM4-202ENST00000332853 EPPK1P58107 5090 aaKnown RBP4.8□□□□□ -1.64
VSTM4-202ENST00000332853 HERC1Q15751 4861 aa4.79□□□□□ -1.64
VSTM4-202ENST00000332853 KRTAP9-3Q9BYQ3 159 aa4.74□□□□□ -1.65
VSTM4-202ENST00000332853 KRTAP19-2Q3LHN2 52 aa4.73□□□□□ -1.65
VSTM4-202ENST00000332853 KRTAP4-8A0A0G2JLE6 195 aa4.72□□□□□ -1.65
VSTM4-202ENST00000332853 KRTAP4-8Q9BYQ9 185 aa4.72□□□□□ -1.65
VSTM4-202ENST00000332853 PCLOQ9Y6V0 5065 aa4.7□□□□□ -1.66
VSTM4-202ENST00000332853 FLGP20930 4061 aaPredicted RBP4.7□□□□□ -1.66
VSTM4-202ENST00000332853 MUC17Q685J3 4493 aa4.66□□□□□ -1.66
VSTM4-202ENST00000332853 ABCA13Q86UQ4 5058 aa4.65□□□□□ -1.67
VSTM4-202ENST00000332853 LCE2BO14633 110 aa4.58□□□□□ -1.68
VSTM4-202ENST00000332853 MT1GP13640 62 aa4.55□□□□□ -1.68
VSTM4-202ENST00000332853 SPRR2EP22531 72 aa4.55□□□□□ -1.68
VSTM4-202ENST00000332853 SPRR2BP35325 72 aa4.55□□□□□ -1.68
VSTM4-202ENST00000332853 SPRR2AP35326 72 aa4.55□□□□□ -1.68
VSTM4-202ENST00000332853 LCE3BQ5TA77 95 aa4.48□□□□□ -1.69
VSTM4-202ENST00000332853 KRTAP19-4Q3LI73 84 aa4.46□□□□□ -1.69
VSTM4-202ENST00000332853 KRTAP4-7Q9BYR0 210 aa4.46□□□□□ -1.7
VSTM4-202ENST00000332853 SPRR5A0A1B0GTR4 108 aa4.45□□□□□ -1.7
VSTM4-202ENST00000332853 FAT4Q6V0I7 4981 aa4.4□□□□□ -1.7
VSTM4-202ENST00000332853 SPRR2DP22532 72 aa4.38□□□□□ -1.71
VSTM4-202ENST00000332853 HMCN2Q8NDA2 5059 aa4.37□□□□□ -1.71
VSTM4-202ENST00000332853 MUC2Q02817 5179 aa4.34□□□□□ -1.71
VSTM4-202ENST00000332853 MT1LQ93083 61 aa4.33□□□□□ -1.72
VSTM4-202ENST00000332853 RNF213Q63HN8 5207 aa4.32□□□□□ -1.72
VSTM4-202ENST00000332853 MT1EP04732 61 aa4.31□□□□□ -1.72
VSTM4-202ENST00000332853 KRTAP19-3Q7Z4W3 81 aa4.29□□□□□ -1.72
VSTM4-202ENST00000332853 KRTAP12-4P60329 112 aa4.27□□□□□ -1.73
VSTM4-202ENST00000332853 UBR4Q5T4S7 5183 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms