RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 INE1O15225 51 aa5.39□□□□□ -1.55
VPS39-201ENST00000318006 VPS13DQ5THJ4 4388 aa5.37□□□□□ -1.55
VPS39-201ENST00000318006 PRKDCP78527 4128 aaKnown RBP5.37□□□□□ -1.55
VPS39-201ENST00000318006 KRTAP10-4P60372 401 aaPredicted RBP5.37□□□□□ -1.55
VPS39-201ENST00000318006 DNAH11Q96DT5 4516 aa5.36□□□□□ -1.55
VPS39-201ENST00000318006 CMYA5Q8N3K9 4069 aa5.35□□□□□ -1.55
VPS39-201ENST00000318006 DNAH5Q8TE73 4624 aa5.34□□□□□ -1.55
VPS39-201ENST00000318006 KRTAP3-2Q9BYR7 98 aa5.33□□□□□ -1.56
VPS39-201ENST00000318006 DNAH3Q8TD57 4116 aa5.33□□□□□ -1.56
VPS39-201ENST00000318006 DNAH17Q9UFH2 4485 aa5.29□□□□□ -1.56
VPS39-201ENST00000318006 KRTAP3-3Q9BYR6 98 aa5.27□□□□□ -1.57
VPS39-201ENST00000318006 KRTAP4-5Q9BYR2 181 aa5.26□□□□□ -1.57
VPS39-201ENST00000318006 KMT2AQ03164 3969 aa5.25□□□□□ -1.57
VPS39-201ENST00000318006 DNAH2Q9P225 4427 aa5.2□□□□□ -1.58
VPS39-201ENST00000318006 LYSTQ99698 3801 aa5.2□□□□□ -1.58
VPS39-201ENST00000318006 DYNC1H1Q14204 4646 aaKnown RBP5.19□□□□□ -1.58
VPS39-201ENST00000318006 LRP1BQ9NZR2 4599 aa5.17□□□□□ -1.58
VPS39-201ENST00000318006 DYNC2H1Q8NCM8 4307 aaKnown RBP5.15□□□□□ -1.59
VPS39-201ENST00000318006 FAT1Q14517 4588 aa5.15□□□□□ -1.59
VPS39-201ENST00000318006 DNAH8Q96JB1 4490 aa5.12□□□□□ -1.59
VPS39-201ENST00000318006 DNAH7Q8WXX0 4024 aa5.12□□□□□ -1.59
VPS39-201ENST00000318006 KRTAP23-1A1A580 65 aa5.08□□□□□ -1.6
VPS39-201ENST00000318006 FAT2Q9NYQ8 4349 aa5.04□□□□□ -1.6
VPS39-201ENST00000318006 HECTD4Q9Y4D8 3996 aa5.02□□□□□ -1.61
VPS39-201ENST00000318006 DNAH6Q9C0G6 4158 aa5.01□□□□□ -1.61
VPS39-201ENST00000318006 VPS13BQ7Z7G8 4022 aa5.01□□□□□ -1.61
VPS39-201ENST00000318006 KRTAP10-12P60413 245 aa5□□□□□ -1.61
VPS39-201ENST00000318006 HYDINQ4G0P3 5121 aa4.99□□□□□ -1.61
VPS39-201ENST00000318006 FRAS1Q86XX4 4008 aa4.99□□□□□ -1.61
VPS39-201ENST00000318006 SACSQ9NZJ4 4579 aa4.99□□□□□ -1.61
VPS39-201ENST00000318006 RYR1P21817 5038 aa4.98□□□□□ -1.61
VPS39-201ENST00000318006 KRTAP12-3P60328 96 aa4.95□□□□□ -1.62
VPS39-201ENST00000318006 KIAA1109Q2LD37 5005 aa4.94□□□□□ -1.62
VPS39-201ENST00000318006 LORP23490 312 aaPredicted RBP4.9□□□□□ -1.62
VPS39-201ENST00000318006 LCE3AQ5TA76 89 aa4.9□□□□□ -1.62
VPS39-201ENST00000318006 APOBP04114 4563 aaKnown RBP4.9□□□□□ -1.62
VPS39-201ENST00000318006 RYR2Q92736 4967 aa4.9□□□□□ -1.63
VPS39-201ENST00000318006 RYR3Q15413 4870 aa4.9□□□□□ -1.63
VPS39-201ENST00000318006 KRTAP17-1Q9BYP8 105 aa4.88□□□□□ -1.63
VPS39-201ENST00000318006 LRP1Q07954 4544 aaKnown RBP4.84□□□□□ -1.63
VPS39-201ENST00000318006 MYCBP2O75592 4640 aa4.82□□□□□ -1.64
VPS39-201ENST00000318006 PKHD1P08F94 4074 aa4.82□□□□□ -1.64
VPS39-201ENST00000318006 KRTAP4-1Q9BYQ7 146 aa4.8□□□□□ -1.64
VPS39-201ENST00000318006 CRCT1Q9UGL9 99 aa4.76□□□□□ -1.65
VPS39-201ENST00000318006 PKD1P98161 4303 aa4.76□□□□□ -1.65
VPS39-201ENST00000318006 KMT2CQ8NEZ4 4911 aaKnown RBP4.74□□□□□ -1.65
VPS39-201ENST00000318006 FAT3Q8TDW7 4589 aa4.71□□□□□ -1.66
VPS39-201ENST00000318006 HSPG2P98160 4391 aa4.69□□□□□ -1.66
VPS39-201ENST00000318006 MT1HP80294 61 aa4.65□□□□□ -1.66
VPS39-201ENST00000318006 HERC2O95714 4834 aa4.62□□□□□ -1.67
VPS39-201ENST00000318006 KRTAP10-5P60370 271 aa4.61□□□□□ -1.67
VPS39-201ENST00000318006 MT2AP02795 61 aa4.6□□□□□ -1.67
VPS39-201ENST00000318006 SPRR2GQ9BYE4 73 aa4.59□□□□□ -1.67
VPS39-201ENST00000318006 LRP2P98164 4655 aa4.56□□□□□ -1.68
VPS39-201ENST00000318006 BIRC6Q9NR09 4857 aa4.54□□□□□ -1.68
VPS39-201ENST00000318006 EPPK1P58107 5090 aaKnown RBP4.53□□□□□ -1.68
VPS39-201ENST00000318006 MT1FP04733 61 aa4.51□□□□□ -1.69
VPS39-201ENST00000318006 KRTAP8-1Q8IUC2 63 aa4.5□□□□□ -1.69
VPS39-201ENST00000318006 LPAP08519 4548 aa4.48□□□□□ -1.69
VPS39-201ENST00000318006 TNXBP22105 4242 aa4.47□□□□□ -1.69
VPS39-201ENST00000318006 PKHD1L1Q86WI1 4243 aa4.45□□□□□ -1.7
VPS39-201ENST00000318006 ABCA13Q86UQ4 5058 aa4.42□□□□□ -1.7
VPS39-201ENST00000318006 HERC1Q15751 4861 aa4.36□□□□□ -1.71
VPS39-201ENST00000318006 LCE3CQ5T5A8 94 aa4.35□□□□□ -1.71
VPS39-201ENST00000318006 KRTAP19-1Q8IUB9 90 aa4.33□□□□□ -1.72
VPS39-201ENST00000318006 KRTAP19-5Q3LI72 72 aa4.31□□□□□ -1.72
VPS39-201ENST00000318006 PCLOQ9Y6V0 5065 aa4.3□□□□□ -1.72
VPS39-201ENST00000318006 KRTAP19-8Q3LI54 63 aa4.3□□□□□ -1.72
VPS39-201ENST00000318006 SPRR5A0A1B0GTR4 108 aa4.26□□□□□ -1.73
VPS39-201ENST00000318006 KRTAP19-4Q3LI73 84 aa4.26□□□□□ -1.73
VPS39-201ENST00000318006 LCE2CQ5TA81 110 aa4.26□□□□□ -1.73
VPS39-201ENST00000318006 KRTAP10-7P60409 375 aaPredicted RBP4.2□□□□□ -1.74
VPS39-201ENST00000318006 SPRR2FQ96RM1 72 aa4.2□□□□□ -1.74
VPS39-201ENST00000318006 KRTAP19-2Q3LHN2 52 aa4.19□□□□□ -1.74
VPS39-201ENST00000318006 KRTAP9-8Q9BYQ0 159 aa4.18□□□□□ -1.74
VPS39-201ENST00000318006 MT1XP80297 61 aa4.17□□□□□ -1.74
VPS39-201ENST00000318006 MT1BP07438 61 aa4.16□□□□□ -1.74
VPS39-201ENST00000318006 MUC17Q685J3 4493 aa4.11□□□□□ -1.75
VPS39-201ENST00000318006 FLGP20930 4061 aaPredicted RBP4.11□□□□□ -1.75
VPS39-201ENST00000318006 KRTAP9-3Q9BYQ3 159 aa4.07□□□□□ -1.76
VPS39-201ENST00000318006 KRTAP12-4P60329 112 aa4.07□□□□□ -1.76
VPS39-201ENST00000318006 RNF213Q63HN8 5207 aa4.06□□□□□ -1.76
VPS39-201ENST00000318006 MUC2Q02817 5179 aa4.03□□□□□ -1.76
VPS39-201ENST00000318006 HMCN2Q8NDA2 5059 aa4.03□□□□□ -1.76
VPS39-201ENST00000318006 FAT4Q6V0I7 4981 aa4.01□□□□□ -1.77
VPS39-201ENST00000318006 UBR4Q5T4S7 5183 aa4□□□□□ -1.77
VPS39-201ENST00000318006 KRTAP4-8A0A0G2JLE6 195 aa3.97□□□□□ -1.77
VPS39-201ENST00000318006 KRTAP4-8Q9BYQ9 185 aa3.97□□□□□ -1.77
VPS39-201ENST00000318006 LCE3BQ5TA77 95 aa3.95□□□□□ -1.78
VPS39-201ENST00000318006 LCE2BO14633 110 aa3.91□□□□□ -1.78
VPS39-201ENST00000318006 SPRR2EP22531 72 aa3.9□□□□□ -1.79
VPS39-201ENST00000318006 SPRR2BP35325 72 aa3.9□□□□□ -1.79
VPS39-201ENST00000318006 SPRR2AP35326 72 aa3.9□□□□□ -1.79
VPS39-201ENST00000318006 MT1GP13640 62 aa3.88□□□□□ -1.79
VPS39-201ENST00000318006 LCE3DQ9BYE3 92 aa3.83□□□□□ -1.8
VPS39-201ENST00000318006 FSIP2Q5CZC0 6907 aa3.8□□□□□ -1.8
VPS39-201ENST00000318006 LCE3EQ5T5B0 92 aa3.8□□□□□ -1.8
VPS39-201ENST00000318006 LCE2AQ5TA79 106 aaPredicted RBP3.79□□□□□ -1.8
VPS39-201ENST00000318006 SPRR2DP22532 72 aa3.77□□□□□ -1.81
VPS39-201ENST00000318006 MT1LQ93083 61 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms