RNA–Protein interactions for RNA: ENST00000315285.7

SPAST-201, Transcript of spastin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SPAST, Length 5,117 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPAST-201ENST00000315285 PLECQ15149 4684 aaKnown RBP6.06□□□□□ -1.44
SPAST-201ENST00000315285 DNAH11Q96DT5 4516 aa6.02□□□□□ -1.45
SPAST-201ENST00000315285 LORP23490 312 aaPredicted RBP6.01□□□□□ -1.45
SPAST-201ENST00000315285 KRTAP10-12P60413 245 aa5.99□□□□□ -1.45
SPAST-201ENST00000315285 DNAH10Q8IVF4 4471 aa5.97□□□□□ -1.45
SPAST-201ENST00000315285 VPS13DQ5THJ4 4388 aa5.95□□□□□ -1.46
SPAST-201ENST00000315285 DNAH17Q9UFH2 4485 aa5.94□□□□□ -1.46
SPAST-201ENST00000315285 KRTAP23-1A1A580 65 aa5.91□□□□□ -1.46
SPAST-201ENST00000315285 DNHD1Q96M86 4753 aa5.89□□□□□ -1.47
SPAST-201ENST00000315285 KRTAP12-3P60328 96 aa5.87□□□□□ -1.47
SPAST-201ENST00000315285 LCE3AQ5TA76 89 aa5.85□□□□□ -1.47
SPAST-201ENST00000315285 INE1O15225 51 aa5.84□□□□□ -1.47
SPAST-201ENST00000315285 DYNC1H1Q14204 4646 aaKnown RBP5.82□□□□□ -1.48
SPAST-201ENST00000315285 STARD9Q9P2P6 4700 aa5.81□□□□□ -1.48
SPAST-201ENST00000315285 DNAH2Q9P225 4427 aa5.8□□□□□ -1.48
SPAST-201ENST00000315285 FAT1Q14517 4588 aa5.79□□□□□ -1.48
SPAST-201ENST00000315285 DNAH3Q8TD57 4116 aa5.79□□□□□ -1.48
SPAST-201ENST00000315285 LRP1BQ9NZR2 4599 aa5.77□□□□□ -1.49
SPAST-201ENST00000315285 KRTAP4-1Q9BYQ7 146 aa5.77□□□□□ -1.49
SPAST-201ENST00000315285 DNAH8Q96JB1 4490 aa5.73□□□□□ -1.49
SPAST-201ENST00000315285 DYNC2H1Q8NCM8 4307 aaKnown RBP5.68□□□□□ -1.5
SPAST-201ENST00000315285 SACSQ9NZJ4 4579 aa5.68□□□□□ -1.5
SPAST-201ENST00000315285 CRCT1Q9UGL9 99 aa5.66□□□□□ -1.5
SPAST-201ENST00000315285 RYR1P21817 5038 aa5.65□□□□□ -1.5
SPAST-201ENST00000315285 PRKDCP78527 4128 aaKnown RBP5.64□□□□□ -1.51
SPAST-201ENST00000315285 ANK2Q01484 3957 aa5.63□□□□□ -1.51
SPAST-201ENST00000315285 FAT2Q9NYQ8 4349 aa5.62□□□□□ -1.51
SPAST-201ENST00000315285 KMT2AQ03164 3969 aa5.58□□□□□ -1.52
SPAST-201ENST00000315285 MT1HP80294 61 aa5.56□□□□□ -1.52
SPAST-201ENST00000315285 APOBP04114 4563 aaKnown RBP5.55□□□□□ -1.52
SPAST-201ENST00000315285 SPRR2GQ9BYE4 73 aa5.54□□□□□ -1.52
SPAST-201ENST00000315285 MT2AP02795 61 aa5.52□□□□□ -1.53
SPAST-201ENST00000315285 VPS13BQ7Z7G8 4022 aa5.52□□□□□ -1.53
SPAST-201ENST00000315285 CMYA5Q8N3K9 4069 aa5.51□□□□□ -1.53
SPAST-201ENST00000315285 LYSTQ99698 3801 aa5.47□□□□□ -1.53
SPAST-201ENST00000315285 MYCBP2O75592 4640 aa5.47□□□□□ -1.53
SPAST-201ENST00000315285 MT1FP04733 61 aa5.43□□□□□ -1.54
SPAST-201ENST00000315285 KIAA1109Q2LD37 5005 aa5.43□□□□□ -1.54
SPAST-201ENST00000315285 DNAH6Q9C0G6 4158 aa5.43□□□□□ -1.54
SPAST-201ENST00000315285 KRTAP8-1Q8IUC2 63 aa5.42□□□□□ -1.54
SPAST-201ENST00000315285 FRAS1Q86XX4 4008 aa5.4□□□□□ -1.54
SPAST-201ENST00000315285 HECTD4Q9Y4D8 3996 aa5.39□□□□□ -1.55
SPAST-201ENST00000315285 RYR3Q15413 4870 aa5.36□□□□□ -1.55
SPAST-201ENST00000315285 DNAH7Q8WXX0 4024 aa5.36□□□□□ -1.55
SPAST-201ENST00000315285 KRTAP17-1Q9BYP8 105 aa5.35□□□□□ -1.55
SPAST-201ENST00000315285 LRP1Q07954 4544 aaKnown RBP5.32□□□□□ -1.56
SPAST-201ENST00000315285 KRTAP10-5P60370 271 aa5.31□□□□□ -1.56
SPAST-201ENST00000315285 RYR2Q92736 4967 aa5.26□□□□□ -1.57
SPAST-201ENST00000315285 KRTAP19-5Q3LI72 72 aa5.25□□□□□ -1.57
SPAST-201ENST00000315285 FAT3Q8TDW7 4589 aa5.24□□□□□ -1.57
SPAST-201ENST00000315285 KRTAP19-1Q8IUB9 90 aa5.23□□□□□ -1.57
SPAST-201ENST00000315285 LCE3CQ5T5A8 94 aa5.18□□□□□ -1.58
SPAST-201ENST00000315285 KRTAP19-8Q3LI54 63 aa5.17□□□□□ -1.58
SPAST-201ENST00000315285 HYDINQ4G0P3 5121 aa5.16□□□□□ -1.58
SPAST-201ENST00000315285 KRTAP10-7P60409 375 aaPredicted RBP5.11□□□□□ -1.59
SPAST-201ENST00000315285 LRP2P98164 4655 aa5.09□□□□□ -1.59
SPAST-201ENST00000315285 HERC2O95714 4834 aa5.06□□□□□ -1.6
SPAST-201ENST00000315285 MT1XP80297 61 aa5.05□□□□□ -1.6
SPAST-201ENST00000315285 PKHD1P08F94 4074 aa5.04□□□□□ -1.6
SPAST-201ENST00000315285 KRTAP19-4Q3LI73 84 aa5.04□□□□□ -1.6
SPAST-201ENST00000315285 HSPG2P98160 4391 aa5.04□□□□□ -1.6
SPAST-201ENST00000315285 SPRR2FQ96RM1 72 aa5.03□□□□□ -1.6
SPAST-201ENST00000315285 MT1BP07438 61 aa5.01□□□□□ -1.61
SPAST-201ENST00000315285 KRTAP9-8Q9BYQ0 159 aa5□□□□□ -1.61
SPAST-201ENST00000315285 PKD1P98161 4303 aa4.98□□□□□ -1.61
SPAST-201ENST00000315285 LCE2CQ5TA81 110 aa4.97□□□□□ -1.61
SPAST-201ENST00000315285 SPRR5A0A1B0GTR4 108 aa4.94□□□□□ -1.62
SPAST-201ENST00000315285 KMT2CQ8NEZ4 4911 aaKnown RBP4.88□□□□□ -1.63
SPAST-201ENST00000315285 PKHD1L1Q86WI1 4243 aa4.88□□□□□ -1.63
SPAST-201ENST00000315285 PCLOQ9Y6V0 5065 aa4.87□□□□□ -1.63
SPAST-201ENST00000315285 HERC1Q15751 4861 aa4.87□□□□□ -1.63
SPAST-201ENST00000315285 BIRC6Q9NR09 4857 aa4.87□□□□□ -1.63
SPAST-201ENST00000315285 KRTAP9-3Q9BYQ3 159 aa4.86□□□□□ -1.63
SPAST-201ENST00000315285 LPAP08519 4548 aa4.85□□□□□ -1.63
SPAST-201ENST00000315285 TNXBP22105 4242 aa4.83□□□□□ -1.64
SPAST-201ENST00000315285 KRTAP4-8A0A0G2JLE6 195 aa4.82□□□□□ -1.64
SPAST-201ENST00000315285 KRTAP4-8Q9BYQ9 185 aa4.82□□□□□ -1.64
SPAST-201ENST00000315285 KRTAP19-2Q3LHN2 52 aa4.81□□□□□ -1.64
SPAST-201ENST00000315285 MUC17Q685J3 4493 aa4.74□□□□□ -1.65
SPAST-201ENST00000315285 MT1GP13640 62 aa4.73□□□□□ -1.65
SPAST-201ENST00000315285 LCE3BQ5TA77 95 aa4.7□□□□□ -1.66
SPAST-201ENST00000315285 FLGP20930 4061 aaPredicted RBP4.67□□□□□ -1.66
SPAST-201ENST00000315285 KRTAP12-4P60329 112 aa4.65□□□□□ -1.66
SPAST-201ENST00000315285 SPRR2EP22531 72 aa4.64□□□□□ -1.67
SPAST-201ENST00000315285 SPRR2BP35325 72 aa4.64□□□□□ -1.67
SPAST-201ENST00000315285 SPRR2AP35326 72 aa4.64□□□□□ -1.67
SPAST-201ENST00000315285 LCE2BO14633 110 aa4.63□□□□□ -1.67
SPAST-201ENST00000315285 ABCA13Q86UQ4 5058 aa4.62□□□□□ -1.67
SPAST-201ENST00000315285 KRTAP4-7Q9BYR0 210 aa4.57□□□□□ -1.68
SPAST-201ENST00000315285 EPPK1P58107 5090 aaKnown RBP4.57□□□□□ -1.68
SPAST-201ENST00000315285 MT1LQ93083 61 aa4.55□□□□□ -1.68
SPAST-201ENST00000315285 MT1EP04732 61 aa4.52□□□□□ -1.69
SPAST-201ENST00000315285 KRTAP19-3Q7Z4W3 81 aa4.51□□□□□ -1.69
SPAST-201ENST00000315285 SPRR2DP22532 72 aa4.48□□□□□ -1.69
SPAST-201ENST00000315285 LCE3DQ9BYE3 92 aa4.46□□□□□ -1.7
SPAST-201ENST00000315285 UBR4Q5T4S7 5183 aa4.42□□□□□ -1.7
SPAST-201ENST00000315285 FAT4Q6V0I7 4981 aa4.42□□□□□ -1.7
SPAST-201ENST00000315285 LCE3EQ5T5B0 92 aa4.4□□□□□ -1.71
SPAST-201ENST00000315285 RNF213Q63HN8 5207 aa4.39□□□□□ -1.71
SPAST-201ENST00000315285 HMCN2Q8NDA2 5059 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms