RNA–Protein interactions for RNA: ENST00000307017.8

USP38-201, Transcript of ubiquitin specific peptidase 38, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP38, Length 7,009 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP38-201ENST00000307017 KRTAP3-2Q9BYR7 98 aa5.58□□□□□ -1.52
USP38-201ENST00000307017 DNAH10Q8IVF4 4471 aa5.52□□□□□ -1.53
USP38-201ENST00000307017 INE1O15225 51 aa5.49□□□□□ -1.53
USP38-201ENST00000307017 KRTAP12-3P60328 96 aa5.48□□□□□ -1.53
USP38-201ENST00000307017 MT1HL1P0DM35 61 aa5.42□□□□□ -1.54
USP38-201ENST00000307017 ANK2Q01484 3957 aa5.41□□□□□ -1.54
USP38-201ENST00000307017 DNAH2Q9P225 4427 aa5.36□□□□□ -1.55
USP38-201ENST00000307017 ALMS1Q8TCU4 4167 aa5.35□□□□□ -1.55
USP38-201ENST00000307017 KRTAP8-1Q8IUC2 63 aa5.35□□□□□ -1.55
USP38-201ENST00000307017 LYSTQ99698 3801 aa5.34□□□□□ -1.55
USP38-201ENST00000307017 DNAH1Q9P2D7 4330 aa5.34□□□□□ -1.55
USP38-201ENST00000307017 CMYA5Q8N3K9 4069 aa5.32□□□□□ -1.56
USP38-201ENST00000307017 KMT2AQ03164 3969 aa5.29□□□□□ -1.56
USP38-201ENST00000307017 DNAH9Q9NYC9 4486 aa5.25□□□□□ -1.57
USP38-201ENST00000307017 DNAH3Q8TD57 4116 aa5.22□□□□□ -1.57
USP38-201ENST00000307017 DNAH8Q96JB1 4490 aa5.22□□□□□ -1.57
USP38-201ENST00000307017 KRTAP10-4P60372 401 aaPredicted RBP5.14□□□□□ -1.59
USP38-201ENST00000307017 VPS13BQ7Z7G8 4022 aa5.14□□□□□ -1.59
USP38-201ENST00000307017 KRTAP4-1Q9BYQ7 146 aa5.09□□□□□ -1.59
USP38-201ENST00000307017 DNAH11Q96DT5 4516 aa5.07□□□□□ -1.6
USP38-201ENST00000307017 PLECQ15149 4684 aaKnown RBP5.06□□□□□ -1.6
USP38-201ENST00000307017 SPRR2FQ96RM1 72 aa5.03□□□□□ -1.6
USP38-201ENST00000307017 DNAH7Q8WXX0 4024 aa5.03□□□□□ -1.6
USP38-201ENST00000307017 DNAH17Q9UFH2 4485 aa4.99□□□□□ -1.61
USP38-201ENST00000307017 KRTAP19-5Q3LI72 72 aa4.97□□□□□ -1.61
USP38-201ENST00000307017 STARD9Q9P2P6 4700 aa4.96□□□□□ -1.62
USP38-201ENST00000307017 DNAH6Q9C0G6 4158 aa4.95□□□□□ -1.62
USP38-201ENST00000307017 PRKDCP78527 4128 aaKnown RBP4.93□□□□□ -1.62
USP38-201ENST00000307017 FAT2Q9NYQ8 4349 aa4.93□□□□□ -1.62
USP38-201ENST00000307017 DNAH5Q8TE73 4624 aa4.91□□□□□ -1.62
USP38-201ENST00000307017 MT1HP80294 61 aa4.91□□□□□ -1.62
USP38-201ENST00000307017 VPS13DQ5THJ4 4388 aa4.89□□□□□ -1.63
USP38-201ENST00000307017 SPRR2EP22531 72 aa4.86□□□□□ -1.63
USP38-201ENST00000307017 SPRR2BP35325 72 aa4.86□□□□□ -1.63
USP38-201ENST00000307017 SPRR2AP35326 72 aa4.86□□□□□ -1.63
USP38-201ENST00000307017 SPRR5A0A1B0GTR4 108 aa4.85□□□□□ -1.63
USP38-201ENST00000307017 LCE3BQ5TA77 95 aa4.84□□□□□ -1.63
USP38-201ENST00000307017 KRTAP23-1A1A580 65 aa4.84□□□□□ -1.64
USP38-201ENST00000307017 HECTD4Q9Y4D8 3996 aa4.82□□□□□ -1.64
USP38-201ENST00000307017 LRP1BQ9NZR2 4599 aa4.8□□□□□ -1.64
USP38-201ENST00000307017 FAT1Q14517 4588 aa4.8□□□□□ -1.64
USP38-201ENST00000307017 MT2AP02795 61 aa4.78□□□□□ -1.64
USP38-201ENST00000307017 MT1FP04733 61 aa4.78□□□□□ -1.64
USP38-201ENST00000307017 LCE3CQ5T5A8 94 aa4.78□□□□□ -1.64
USP38-201ENST00000307017 DYNC2H1Q8NCM8 4307 aaKnown RBP4.76□□□□□ -1.65
USP38-201ENST00000307017 APOBP04114 4563 aaKnown RBP4.74□□□□□ -1.65
USP38-201ENST00000307017 LPAP08519 4548 aa4.71□□□□□ -1.66
USP38-201ENST00000307017 SACSQ9NZJ4 4579 aa4.69□□□□□ -1.66
USP38-201ENST00000307017 SPRR2DP22532 72 aa4.68□□□□□ -1.66
USP38-201ENST00000307017 MT1GP13640 62 aa4.67□□□□□ -1.66
USP38-201ENST00000307017 SPRR2GQ9BYE4 73 aa4.6□□□□□ -1.67
USP38-201ENST00000307017 FAT3Q8TDW7 4589 aa4.57□□□□□ -1.68
USP38-201ENST00000307017 KRTAP4-8A0A0G2JLE6 195 aa4.56□□□□□ -1.68
USP38-201ENST00000307017 KRTAP4-8Q9BYQ9 185 aa4.56□□□□□ -1.68
USP38-201ENST00000307017 PKD1P98161 4303 aa4.55□□□□□ -1.68
USP38-201ENST00000307017 KRTAP12-4P60329 112 aa4.54□□□□□ -1.68
USP38-201ENST00000307017 DYNC1H1Q14204 4646 aaKnown RBP4.52□□□□□ -1.69
USP38-201ENST00000307017 MYCBP2O75592 4640 aa4.52□□□□□ -1.69
USP38-201ENST00000307017 LRP1Q07954 4544 aaKnown RBP4.48□□□□□ -1.69
USP38-201ENST00000307017 KRTAP17-1Q9BYP8 105 aa4.47□□□□□ -1.69
USP38-201ENST00000307017 LCE2BO14633 110 aa4.47□□□□□ -1.69
USP38-201ENST00000307017 KRTAP4-7Q9BYR0 210 aa4.46□□□□□ -1.7
USP38-201ENST00000307017 PKHD1P08F94 4074 aa4.44□□□□□ -1.7
USP38-201ENST00000307017 MT4P47944 62 aa4.4□□□□□ -1.71
USP38-201ENST00000307017 LCE2CQ5TA81 110 aa4.39□□□□□ -1.71
USP38-201ENST00000307017 MT1XP80297 61 aa4.37□□□□□ -1.71
USP38-201ENST00000307017 LCE3EQ5T5B0 92 aa4.36□□□□□ -1.71
USP38-201ENST00000307017 PKHD1L1Q86WI1 4243 aa4.36□□□□□ -1.71
USP38-201ENST00000307017 LCE2DQ5TA82 110 aaPredicted RBP4.35□□□□□ -1.71
USP38-201ENST00000307017 HSPG2P98160 4391 aa4.34□□□□□ -1.71
USP38-201ENST00000307017 TNXBP22105 4242 aa4.33□□□□□ -1.72
USP38-201ENST00000307017 RYR1P21817 5038 aa4.33□□□□□ -1.72
USP38-201ENST00000307017 LCE1BQ5T7P3 118 aa4.32□□□□□ -1.72
USP38-201ENST00000307017 KRTAP19-1Q8IUB9 90 aa4.31□□□□□ -1.72
USP38-201ENST00000307017 DNHD1Q96M86 4753 aa4.31□□□□□ -1.72
USP38-201ENST00000307017 LOC100996750A0A140TA64 210 aa4.27□□□□□ -1.73
USP38-201ENST00000307017 FLGP20930 4061 aaPredicted RBP4.26□□□□□ -1.73
USP38-201ENST00000307017 LCE3DQ9BYE3 92 aa4.25□□□□□ -1.73
USP38-201ENST00000307017 MT1BP07438 61 aa4.2□□□□□ -1.74
USP38-201ENST00000307017 LCE1DQ5T752 114 aa4.18□□□□□ -1.74
USP38-201ENST00000307017 KRTAP4-3Q9BYR4 195 aa4.17□□□□□ -1.74
USP38-201ENST00000307017 PRM1P04553 51 aa4.16□□□□□ -1.74
USP38-201ENST00000307017 HYDINQ4G0P3 5121 aa4.15□□□□□ -1.74
USP38-201ENST00000307017 KRTAP9-8Q9BYQ0 159 aa4.13□□□□□ -1.75
USP38-201ENST00000307017 LRP2P98164 4655 aa4.11□□□□□ -1.75
USP38-201ENST00000307017 LCE5AQ5TCM9 118 aa4.1□□□□□ -1.75
USP38-201ENST00000307017 KRTAP19-8Q3LI54 63 aa4.09□□□□□ -1.75
USP38-201ENST00000307017 KRTAP4-9Q9BYQ8 210 aa4.08□□□□□ -1.76
USP38-201ENST00000307017 RYR3Q15413 4870 aa4.06□□□□□ -1.76
USP38-201ENST00000307017 LCE1CQ5T751 118 aa4.04□□□□□ -1.76
USP38-201ENST00000307017 LCE1EQ5T753 118 aa4.04□□□□□ -1.76
USP38-201ENST00000307017 LCE1FQ5T754 118 aa4.04□□□□□ -1.76
USP38-201ENST00000307017 LCE1AQ5T7P2 110 aa4.04□□□□□ -1.76
USP38-201ENST00000307017 KRTAP9-3Q9BYQ3 159 aa4□□□□□ -1.77
USP38-201ENST00000307017 SYNE2Q8WXH0 6885 aaKnown RBP3.96□□□□□ -1.78
USP38-201ENST00000307017 MT1LQ93083 61 aa3.94□□□□□ -1.78
USP38-201ENST00000307017 KRTAP19-3Q7Z4W3 81 aa3.92□□□□□ -1.78
USP38-201ENST00000307017 LCE4AQ5TA78 99 aa3.92□□□□□ -1.78
USP38-201ENST00000307017 MT1EP04732 61 aa3.87□□□□□ -1.79
USP38-201ENST00000307017 KMT2CQ8NEZ4 4911 aaKnown RBP3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms