RNA–Protein interactions for RNA: ENST00000305364.8

TRIM35-201, Transcript of tripartite motif containing 35, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM35, Length 4,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35-201ENST00000305364 HECTD4Q9Y4D8 3996 aa6.56□□□□□ -1.36
TRIM35-201ENST00000305364 DNAH2Q9P225 4427 aa6.55□□□□□ -1.36
TRIM35-201ENST00000305364 KRTAP10-8P60410 259 aa6.54□□□□□ -1.36
TRIM35-201ENST00000305364 KRTAP3-3Q9BYR6 98 aa6.54□□□□□ -1.36
TRIM35-201ENST00000305364 KRTAP3-2Q9BYR7 98 aa6.53□□□□□ -1.36
TRIM35-201ENST00000305364 KRTAP12-1P59990 96 aa6.52□□□□□ -1.37
TRIM35-201ENST00000305364 KRTAP15-1Q3LI76 137 aa6.51□□□□□ -1.37
TRIM35-201ENST00000305364 DNAH6Q9C0G6 4158 aa6.47□□□□□ -1.37
TRIM35-201ENST00000305364 PLAC4Q8WY50 150 aa6.45□□□□□ -1.38
TRIM35-201ENST00000305364 A0A0A0MQY5 61 aa6.45□□□□□ -1.38
TRIM35-201ENST00000305364 A0A1B0GVY2 172 aa6.44□□□□□ -1.38
TRIM35-201ENST00000305364 DYNC2H1Q8NCM8 4307 aaKnown RBP6.42□□□□□ -1.38
TRIM35-201ENST00000305364 PRKDCP78527 4128 aaKnown RBP6.41□□□□□ -1.38
TRIM35-201ENST00000305364 VPS13BQ7Z7G8 4022 aa6.4□□□□□ -1.39
TRIM35-201ENST00000305364 DNAH5Q8TE73 4624 aa6.37□□□□□ -1.39
TRIM35-201ENST00000305364 KRTAP10-4P60372 401 aaPredicted RBP6.31□□□□□ -1.4
TRIM35-201ENST00000305364 FAT1Q14517 4588 aa6.29□□□□□ -1.4
TRIM35-201ENST00000305364 PP632Q6XCG6 107 aa6.18□□□□□ -1.42
TRIM35-201ENST00000305364 SACSQ9NZJ4 4579 aa6.16□□□□□ -1.42
TRIM35-201ENST00000305364 KRTAP4-5Q9BYR2 181 aa6.16□□□□□ -1.42
TRIM35-201ENST00000305364 DYNC1H1Q14204 4646 aaKnown RBP6.14□□□□□ -1.43
TRIM35-201ENST00000305364 MYCBP2O75592 4640 aa6.12□□□□□ -1.43
TRIM35-201ENST00000305364 HYDINQ4G0P3 5121 aa6.1□□□□□ -1.43
TRIM35-201ENST00000305364 TNP1P09430 55 aa6.09□□□□□ -1.43
TRIM35-201ENST00000305364 PKHD1P08F94 4074 aa6.05□□□□□ -1.44
TRIM35-201ENST00000305364 PKD1P98161 4303 aa6.04□□□□□ -1.44
TRIM35-201ENST00000305364 FAT2Q9NYQ8 4349 aa6.01□□□□□ -1.45
TRIM35-201ENST00000305364 APOBP04114 4563 aaKnown RBP6.01□□□□□ -1.45
TRIM35-201ENST00000305364 MT1HL1P0DM35 61 aa6□□□□□ -1.45
TRIM35-201ENST00000305364 LORP23490 312 aaPredicted RBP6□□□□□ -1.45
TRIM35-201ENST00000305364 KIAA1109Q2LD37 5005 aa5.99□□□□□ -1.45
TRIM35-201ENST00000305364 LRP1Q07954 4544 aaKnown RBP5.99□□□□□ -1.45
TRIM35-201ENST00000305364 KRTAP10-10P60014 251 aa5.98□□□□□ -1.45
TRIM35-201ENST00000305364 RYR1P21817 5038 aa5.94□□□□□ -1.46
TRIM35-201ENST00000305364 FAT3Q8TDW7 4589 aa5.89□□□□□ -1.47
TRIM35-201ENST00000305364 HSPG2P98160 4391 aa5.86□□□□□ -1.47
TRIM35-201ENST00000305364 RYR3Q15413 4870 aa5.84□□□□□ -1.47
TRIM35-201ENST00000305364 PKHD1L1Q86WI1 4243 aa5.78□□□□□ -1.48
TRIM35-201ENST00000305364 LRP2P98164 4655 aa5.77□□□□□ -1.49
TRIM35-201ENST00000305364 PRO2289Q9P1D8 64 aa5.75□□□□□ -1.49
TRIM35-201ENST00000305364 KMT2CQ8NEZ4 4911 aaKnown RBP5.74□□□□□ -1.49
TRIM35-201ENST00000305364 KRTAP17-1Q9BYP8 105 aa5.66□□□□□ -1.5
TRIM35-201ENST00000305364 KRTAP4-1Q9BYQ7 146 aa5.65□□□□□ -1.5
TRIM35-201ENST00000305364 TNXBP22105 4242 aa5.61□□□□□ -1.51
TRIM35-201ENST00000305364 LPAP08519 4548 aa5.59□□□□□ -1.52
TRIM35-201ENST00000305364 HERC2O95714 4834 aa5.57□□□□□ -1.52
TRIM35-201ENST00000305364 KRTAP23-1A1A580 65 aa5.56□□□□□ -1.52
TRIM35-201ENST00000305364 RYR2Q92736 4967 aa5.53□□□□□ -1.52
TRIM35-201ENST00000305364 PCLOQ9Y6V0 5065 aa5.48□□□□□ -1.53
TRIM35-201ENST00000305364 LCE3AQ5TA76 89 aa5.47□□□□□ -1.53
TRIM35-201ENST00000305364 EPPK1P58107 5090 aaKnown RBP5.43□□□□□ -1.54
TRIM35-201ENST00000305364 INE1O15225 51 aa5.41□□□□□ -1.54
TRIM35-201ENST00000305364 SPRR5A0A1B0GTR4 108 aa5.38□□□□□ -1.55
TRIM35-201ENST00000305364 BIRC6Q9NR09 4857 aa5.32□□□□□ -1.56
TRIM35-201ENST00000305364 KRTAP12-3P60328 96 aa5.28□□□□□ -1.56
TRIM35-201ENST00000305364 FSIP2Q5CZC0 6907 aa5.26□□□□□ -1.57
TRIM35-201ENST00000305364 ABCA13Q86UQ4 5058 aa5.26□□□□□ -1.57
TRIM35-201ENST00000305364 KRTAP10-12P60413 245 aa5.24□□□□□ -1.57
TRIM35-201ENST00000305364 KRTAP19-2Q3LHN2 52 aa5.24□□□□□ -1.57
TRIM35-201ENST00000305364 SPRR2GQ9BYE4 73 aa5.24□□□□□ -1.57
TRIM35-201ENST00000305364 KRTAP19-1Q8IUB9 90 aa5.17□□□□□ -1.58
TRIM35-201ENST00000305364 HERC1Q15751 4861 aa5.16□□□□□ -1.58
TRIM35-201ENST00000305364 KRTAP8-1Q8IUC2 63 aa5.15□□□□□ -1.59
TRIM35-201ENST00000305364 RNF213Q63HN8 5207 aa5.14□□□□□ -1.59
TRIM35-201ENST00000305364 MUC17Q685J3 4493 aa5.14□□□□□ -1.59
TRIM35-201ENST00000305364 MUC2Q02817 5179 aa5.13□□□□□ -1.59
TRIM35-201ENST00000305364 MT1HP80294 61 aa5.08□□□□□ -1.6
TRIM35-201ENST00000305364 MT1FP04733 61 aa5.07□□□□□ -1.6
TRIM35-201ENST00000305364 FLGP20930 4061 aaPredicted RBP5.06□□□□□ -1.6
TRIM35-201ENST00000305364 MT2AP02795 61 aa5.06□□□□□ -1.6
TRIM35-201ENST00000305364 UBR4Q5T4S7 5183 aa5.04□□□□□ -1.6
TRIM35-201ENST00000305364 LCE2CQ5TA81 110 aa4.96□□□□□ -1.61
TRIM35-201ENST00000305364 KRTAP10-7P60409 375 aaPredicted RBP4.92□□□□□ -1.62
TRIM35-201ENST00000305364 MT1XP80297 61 aa4.92□□□□□ -1.62
TRIM35-201ENST00000305364 KRTAP10-5P60370 271 aa4.92□□□□□ -1.62
TRIM35-201ENST00000305364 FAT4Q6V0I7 4981 aa4.91□□□□□ -1.62
TRIM35-201ENST00000305364 KRTAP19-8Q3LI54 63 aa4.89□□□□□ -1.63
TRIM35-201ENST00000305364 MT1BP07438 61 aa4.87□□□□□ -1.63
TRIM35-201ENST00000305364 KRTAP19-5Q3LI72 72 aa4.86□□□□□ -1.63
TRIM35-201ENST00000305364 LCE3CQ5T5A8 94 aa4.85□□□□□ -1.63
TRIM35-201ENST00000305364 KRTAP9-8Q9BYQ0 159 aa4.84□□□□□ -1.64
TRIM35-201ENST00000305364 CRCT1Q9UGL9 99 aa4.81□□□□□ -1.64
TRIM35-201ENST00000305364 HMCN2Q8NDA2 5059 aa4.8□□□□□ -1.64
TRIM35-201ENST00000305364 KRTAP4-8A0A0G2JLE6 195 aa4.63□□□□□ -1.67
TRIM35-201ENST00000305364 KRTAP4-8Q9BYQ9 185 aa4.63□□□□□ -1.67
TRIM35-201ENST00000305364 KRTAP9-3Q9BYQ3 159 aa4.62□□□□□ -1.67
TRIM35-201ENST00000305364 OBSCNQ5VST9 7968 aa4.57□□□□□ -1.68
TRIM35-201ENST00000305364 KRTAP4-7Q9BYR0 210 aa4.56□□□□□ -1.68
TRIM35-201ENST00000305364 SPRR2FQ96RM1 72 aa4.51□□□□□ -1.69
TRIM35-201ENST00000305364 KRTAP9-6A8MVA2 160 aa4.48□□□□□ -1.69
TRIM35-201ENST00000305364 SYNE1Q8NF91 8797 aaKnown RBP4.47□□□□□ -1.69
TRIM35-201ENST00000305364 USH2AO75445 5202 aa4.44□□□□□ -1.7
TRIM35-201ENST00000305364 LCE2BO14633 110 aa4.44□□□□□ -1.7
TRIM35-201ENST00000305364 KRTAP19-4Q3LI73 84 aa4.41□□□□□ -1.7
TRIM35-201ENST00000305364 LCE2DQ5TA82 110 aaPredicted RBP4.41□□□□□ -1.7
TRIM35-201ENST00000305364 KMT2DO14686 5537 aa4.41□□□□□ -1.7
TRIM35-201ENST00000305364 KRTAP2-3P0C7H8 128 aa4.39□□□□□ -1.71
TRIM35-201ENST00000305364 KRTAP2-4Q9BYR9 128 aa4.39□□□□□ -1.71
TRIM35-201ENST00000305364 KRTAP2-1Q9BYU5 128 aa4.39□□□□□ -1.71
TRIM35-201ENST00000305364 KRTAP12-4P60329 112 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms