RNA–Protein interactions for RNA: ENST00000300527.8

COL6A2-201, Transcript of collagen type VI alpha 2 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2-201ENST00000300527 NDUFAF8A1L188 74 aa7.57□□□□□ -1.2
COL6A2-201ENST00000300527 S4R3F8 94 aa7.53□□□□□ -1.2
COL6A2-201ENST00000300527 KRTAP3-3Q9BYR6 98 aa7.51□□□□□ -1.21
COL6A2-201ENST00000300527 KRTAP10-8P60410 259 aa7.5□□□□□ -1.21
COL6A2-201ENST00000300527 SACSQ9NZJ4 4579 aa7.5□□□□□ -1.21
COL6A2-201ENST00000300527 DYNC1H1Q14204 4646 aaKnown RBP7.48□□□□□ -1.21
COL6A2-201ENST00000300527 KRTAP3-2Q9BYR7 98 aa7.47□□□□□ -1.21
COL6A2-201ENST00000300527 KRTAP12-2P59991 146 aa7.46□□□□□ -1.22
COL6A2-201ENST00000300527 MYCBP2O75592 4640 aa7.46□□□□□ -1.22
COL6A2-201ENST00000300527 LRP1Q07954 4544 aaKnown RBP7.36□□□□□ -1.23
COL6A2-201ENST00000300527 KRTAP10-4P60372 401 aaPredicted RBP7.35□□□□□ -1.23
COL6A2-201ENST00000300527 XP32Q5T750 250 aa7.32□□□□□ -1.24
COL6A2-201ENST00000300527 KRTAP15-1Q3LI76 137 aa7.32□□□□□ -1.24
COL6A2-201ENST00000300527 HSPG2P98160 4391 aa7.31□□□□□ -1.24
COL6A2-201ENST00000300527 KRTAP12-1P59990 96 aa7.31□□□□□ -1.24
COL6A2-201ENST00000300527 APOBP04114 4563 aaKnown RBP7.28□□□□□ -1.24
COL6A2-201ENST00000300527 PKHD1L1Q86WI1 4243 aa7.26□□□□□ -1.25
COL6A2-201ENST00000300527 FAT3Q8TDW7 4589 aa7.23□□□□□ -1.25
COL6A2-201ENST00000300527 A0A1B0GVY2 172 aa7.21□□□□□ -1.26
COL6A2-201ENST00000300527 M0QZ58 72 aa7.19□□□□□ -1.26
COL6A2-201ENST00000300527 Q5VSD8 79 aa7.18□□□□□ -1.26
COL6A2-201ENST00000300527 R4GN34 69 aa7.11□□□□□ -1.27
COL6A2-201ENST00000300527 LPAP08519 4548 aa7.1□□□□□ -1.27
COL6A2-201ENST00000300527 LUZP6Q538Z0 58 aa7.09□□□□□ -1.27
COL6A2-201ENST00000300527 KMT2CQ8NEZ4 4911 aaKnown RBP7.05□□□□□ -1.28
COL6A2-201ENST00000300527 TNXBP22105 4242 aa7.03□□□□□ -1.28
COL6A2-201ENST00000300527 LRP2P98164 4655 aa7.03□□□□□ -1.28
COL6A2-201ENST00000300527 PLAC4Q8WY50 150 aa6.99□□□□□ -1.29
COL6A2-201ENST00000300527 LORP23490 312 aaPredicted RBP6.92□□□□□ -1.3
COL6A2-201ENST00000300527 SEC61BP60468 96 aaKnown RBP6.92□□□□□ -1.3
COL6A2-201ENST00000300527 RYR2Q92736 4967 aa6.92□□□□□ -1.3
COL6A2-201ENST00000300527 KRTAP17-1Q9BYP8 105 aa6.91□□□□□ -1.3
COL6A2-201ENST00000300527 CAMK2N1Q7Z7J9 78 aa6.88□□□□□ -1.31
COL6A2-201ENST00000300527 MT1HL1P0DM35 61 aa6.87□□□□□ -1.31
COL6A2-201ENST00000300527 KIAA1109Q2LD37 5005 aa6.87□□□□□ -1.31
COL6A2-201ENST00000300527 J3QL48 77 aa6.85□□□□□ -1.31
COL6A2-201ENST00000300527 RYR1P21817 5038 aa6.81□□□□□ -1.32
COL6A2-201ENST00000300527 RYR3Q15413 4870 aa6.76□□□□□ -1.33
COL6A2-201ENST00000300527 ABCA13Q86UQ4 5058 aa6.68□□□□□ -1.34
COL6A2-201ENST00000300527 KRTAP4-1Q9BYQ7 146 aa6.6□□□□□ -1.35
COL6A2-201ENST00000300527 PP632Q6XCG6 107 aa6.59□□□□□ -1.36
COL6A2-201ENST00000300527 KRTAP4-5Q9BYR2 181 aa6.56□□□□□ -1.36
COL6A2-201ENST00000300527 TNP1P09430 55 aa6.49□□□□□ -1.37
COL6A2-201ENST00000300527 MUC2Q02817 5179 aa6.48□□□□□ -1.37
COL6A2-201ENST00000300527 KRTAP21-3Q3LHN1 58 aa6.46□□□□□ -1.38
COL6A2-201ENST00000300527 EPPK1P58107 5090 aaKnown RBP6.43□□□□□ -1.38
COL6A2-201ENST00000300527 MUC17Q685J3 4493 aa6.43□□□□□ -1.38
COL6A2-201ENST00000300527 KRTAP19-2Q3LHN2 52 aa6.27□□□□□ -1.41
COL6A2-201ENST00000300527 M0R2T5 61 aa6.19□□□□□ -1.42
COL6A2-201ENST00000300527 HERC2O95714 4834 aa6.17□□□□□ -1.42
COL6A2-201ENST00000300527 FAT4Q6V0I7 4981 aa6.14□□□□□ -1.43
COL6A2-201ENST00000300527 SPRR5A0A1B0GTR4 108 aa6.14□□□□□ -1.43
COL6A2-201ENST00000300527 PCLOQ9Y6V0 5065 aa6.14□□□□□ -1.43
COL6A2-201ENST00000300527 LCE3AQ5TA76 89 aa6.13□□□□□ -1.43
COL6A2-201ENST00000300527 FLGP20930 4061 aaPredicted RBP6.12□□□□□ -1.43
COL6A2-201ENST00000300527 KRTAP23-1A1A580 65 aa6.06□□□□□ -1.44
COL6A2-201ENST00000300527 KRTAP10-10P60014 251 aa5.98□□□□□ -1.45
COL6A2-201ENST00000300527 KRTAP19-1Q8IUB9 90 aa5.97□□□□□ -1.45
COL6A2-201ENST00000300527 HERC1Q15751 4861 aa5.96□□□□□ -1.46
COL6A2-201ENST00000300527 SPRR2GQ9BYE4 73 aa5.91□□□□□ -1.46
COL6A2-201ENST00000300527 PRO2289Q9P1D8 64 aa5.91□□□□□ -1.46
COL6A2-201ENST00000300527 BIRC6Q9NR09 4857 aa5.91□□□□□ -1.46
COL6A2-201ENST00000300527 RNF213Q63HN8 5207 aa5.9□□□□□ -1.47
COL6A2-201ENST00000300527 HMCN2Q8NDA2 5059 aa5.85□□□□□ -1.47
COL6A2-201ENST00000300527 LCE2CQ5TA81 110 aa5.84□□□□□ -1.47
COL6A2-201ENST00000300527 MT1FP04733 61 aa5.82□□□□□ -1.48
COL6A2-201ENST00000300527 KRTAP12-3P60328 96 aa5.79□□□□□ -1.48
COL6A2-201ENST00000300527 MT2AP02795 61 aa5.76□□□□□ -1.49
COL6A2-201ENST00000300527 KRTAP8-1Q8IUC2 63 aa5.76□□□□□ -1.49
COL6A2-201ENST00000300527 INE1O15225 51 aa5.75□□□□□ -1.49
COL6A2-201ENST00000300527 KRTAP10-12P60413 245 aa5.74□□□□□ -1.49
COL6A2-201ENST00000300527 MT1HP80294 61 aa5.74□□□□□ -1.49
COL6A2-201ENST00000300527 UBR4Q5T4S7 5183 aa5.73□□□□□ -1.49
COL6A2-201ENST00000300527 KRTAP10-5P60370 271 aa5.67□□□□□ -1.5
COL6A2-201ENST00000300527 MT1XP80297 61 aa5.66□□□□□ -1.5
COL6A2-201ENST00000300527 KRTAP10-7P60409 375 aaPredicted RBP5.65□□□□□ -1.5
COL6A2-201ENST00000300527 MT1BP07438 61 aa5.61□□□□□ -1.51
COL6A2-201ENST00000300527 KRTAP9-8Q9BYQ0 159 aa5.61□□□□□ -1.51
COL6A2-201ENST00000300527 KRTAP19-8Q3LI54 63 aa5.55□□□□□ -1.52
COL6A2-201ENST00000300527 KMT2DO14686 5537 aa5.51□□□□□ -1.53
COL6A2-201ENST00000300527 KRTAP19-5Q3LI72 72 aa5.47□□□□□ -1.53
COL6A2-201ENST00000300527 USH2AO75445 5202 aa5.42□□□□□ -1.54
COL6A2-201ENST00000300527 LCE3CQ5T5A8 94 aa5.39□□□□□ -1.55
COL6A2-201ENST00000300527 KRTAP9-3Q9BYQ3 159 aa5.33□□□□□ -1.56
COL6A2-201ENST00000300527 KRTAP4-8A0A0G2JLE6 195 aa5.33□□□□□ -1.56
COL6A2-201ENST00000300527 KRTAP4-8Q9BYQ9 185 aa5.33□□□□□ -1.56
COL6A2-201ENST00000300527 KRTAP4-7Q9BYR0 210 aa5.3□□□□□ -1.56
COL6A2-201ENST00000300527 KRTAP9-6A8MVA2 160 aa5.28□□□□□ -1.56
COL6A2-201ENST00000300527 FSIP2Q5CZC0 6907 aa5.19□□□□□ -1.58
COL6A2-201ENST00000300527 LCE2BO14633 110 aa5.17□□□□□ -1.58
COL6A2-201ENST00000300527 KRTAP2-3P0C7H8 128 aa5.03□□□□□ -1.6
COL6A2-201ENST00000300527 KRTAP2-4Q9BYR9 128 aa5.03□□□□□ -1.6
COL6A2-201ENST00000300527 KRTAP2-1Q9BYU5 128 aa5.03□□□□□ -1.6
COL6A2-201ENST00000300527 KRTAP19-7Q3SYF9 63 aa5.02□□□□□ -1.61
COL6A2-201ENST00000300527 CRCT1Q9UGL9 99 aa5□□□□□ -1.61
COL6A2-201ENST00000300527 MT1LQ93083 61 aa4.92□□□□□ -1.62
COL6A2-201ENST00000300527 LOC100996750A0A140TA64 210 aa4.91□□□□□ -1.62
COL6A2-201ENST00000300527 KRTAP4-3Q9BYR4 195 aa4.88□□□□□ -1.63
COL6A2-201ENST00000300527 MT1EP04732 61 aa4.85□□□□□ -1.63
COL6A2-201ENST00000300527 DSTQ03001 7570 aaKnown RBP4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms