RNA–Protein interactions for RNA: ENST00000297267.13

FNDC1-201, Transcript of fibronectin type III domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FNDC1, Length 6,552 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FNDC1-201ENST00000297267 ANK2Q01484 3957 aa7□□□□□ -1.29
FNDC1-201ENST00000297267 CMYA5Q8N3K9 4069 aa6.95□□□□□ -1.3
FNDC1-201ENST00000297267 LORP23490 312 aaPredicted RBP6.94□□□□□ -1.3
FNDC1-201ENST00000297267 MT1HL1P0DM35 61 aa6.93□□□□□ -1.3
FNDC1-201ENST00000297267 KRTAP3-2Q9BYR7 98 aa6.93□□□□□ -1.3
FNDC1-201ENST00000297267 KMT2AQ03164 3969 aa6.92□□□□□ -1.3
FNDC1-201ENST00000297267 DNAH3Q8TD57 4116 aa6.9□□□□□ -1.31
FNDC1-201ENST00000297267 DNAH2Q9P225 4427 aa6.86□□□□□ -1.31
FNDC1-201ENST00000297267 KRTAP10-12P60413 245 aa6.82□□□□□ -1.32
FNDC1-201ENST00000297267 LCE3AQ5TA76 89 aa6.82□□□□□ -1.32
FNDC1-201ENST00000297267 PLECQ15149 4684 aaKnown RBP6.79□□□□□ -1.32
FNDC1-201ENST00000297267 DNAH11Q96DT5 4516 aa6.69□□□□□ -1.34
FNDC1-201ENST00000297267 KRTAP10-4P60372 401 aaPredicted RBP6.69□□□□□ -1.34
FNDC1-201ENST00000297267 DNAH8Q96JB1 4490 aa6.66□□□□□ -1.34
FNDC1-201ENST00000297267 DNAH7Q8WXX0 4024 aa6.65□□□□□ -1.34
FNDC1-201ENST00000297267 VPS13BQ7Z7G8 4022 aa6.65□□□□□ -1.34
FNDC1-201ENST00000297267 STARD9Q9P2P6 4700 aa6.64□□□□□ -1.35
FNDC1-201ENST00000297267 KRTAP12-3P60328 96 aa6.61□□□□□ -1.35
FNDC1-201ENST00000297267 DNAH17Q9UFH2 4485 aa6.56□□□□□ -1.36
FNDC1-201ENST00000297267 VPS13DQ5THJ4 4388 aa6.56□□□□□ -1.36
FNDC1-201ENST00000297267 DNAH6Q9C0G6 4158 aa6.53□□□□□ -1.36
FNDC1-201ENST00000297267 DNAH5Q8TE73 4624 aa6.52□□□□□ -1.37
FNDC1-201ENST00000297267 KRTAP10-5P60370 271 aa6.52□□□□□ -1.37
FNDC1-201ENST00000297267 PRKDCP78527 4128 aaKnown RBP6.49□□□□□ -1.37
FNDC1-201ENST00000297267 KRTAP4-1Q9BYQ7 146 aa6.49□□□□□ -1.37
FNDC1-201ENST00000297267 FAT2Q9NYQ8 4349 aa6.49□□□□□ -1.37
FNDC1-201ENST00000297267 INE1O15225 51 aa6.4□□□□□ -1.39
FNDC1-201ENST00000297267 LRP1BQ9NZR2 4599 aa6.4□□□□□ -1.39
FNDC1-201ENST00000297267 HECTD4Q9Y4D8 3996 aa6.39□□□□□ -1.39
FNDC1-201ENST00000297267 DYNC2H1Q8NCM8 4307 aaKnown RBP6.37□□□□□ -1.39
FNDC1-201ENST00000297267 KRTAP8-1Q8IUC2 63 aa6.32□□□□□ -1.4
FNDC1-201ENST00000297267 FAT1Q14517 4588 aa6.29□□□□□ -1.4
FNDC1-201ENST00000297267 SACSQ9NZJ4 4579 aa6.23□□□□□ -1.41
FNDC1-201ENST00000297267 MT1HP80294 61 aa6.22□□□□□ -1.41
FNDC1-201ENST00000297267 LPAP08519 4548 aa6.13□□□□□ -1.43
FNDC1-201ENST00000297267 DYNC1H1Q14204 4646 aaKnown RBP6.12□□□□□ -1.43
FNDC1-201ENST00000297267 APOBP04114 4563 aaKnown RBP6.11□□□□□ -1.43
FNDC1-201ENST00000297267 KRTAP19-5Q3LI72 72 aa6.08□□□□□ -1.44
FNDC1-201ENST00000297267 MT2AP02795 61 aa6.04□□□□□ -1.44
FNDC1-201ENST00000297267 MT1FP04733 61 aa6.04□□□□□ -1.44
FNDC1-201ENST00000297267 KRTAP17-1Q9BYP8 105 aa5.99□□□□□ -1.45
FNDC1-201ENST00000297267 SPRR2FQ96RM1 72 aa5.98□□□□□ -1.45
FNDC1-201ENST00000297267 DNHD1Q96M86 4753 aa5.96□□□□□ -1.46
FNDC1-201ENST00000297267 PKHD1P08F94 4074 aa5.93□□□□□ -1.46
FNDC1-201ENST00000297267 KRTAP23-1A1A580 65 aa5.93□□□□□ -1.46
FNDC1-201ENST00000297267 FAT3Q8TDW7 4589 aa5.92□□□□□ -1.46
FNDC1-201ENST00000297267 MYCBP2O75592 4640 aa5.9□□□□□ -1.46
FNDC1-201ENST00000297267 KRTAP10-7P60409 375 aaPredicted RBP5.89□□□□□ -1.47
FNDC1-201ENST00000297267 LRP1Q07954 4544 aaKnown RBP5.89□□□□□ -1.47
FNDC1-201ENST00000297267 PKD1P98161 4303 aa5.88□□□□□ -1.47
FNDC1-201ENST00000297267 HSPG2P98160 4391 aa5.85□□□□□ -1.47
FNDC1-201ENST00000297267 LCE3CQ5T5A8 94 aa5.81□□□□□ -1.48
FNDC1-201ENST00000297267 SPRR2GQ9BYE4 73 aa5.8□□□□□ -1.48
FNDC1-201ENST00000297267 RYR1P21817 5038 aa5.79□□□□□ -1.48
FNDC1-201ENST00000297267 HYDINQ4G0P3 5121 aa5.78□□□□□ -1.48
FNDC1-201ENST00000297267 LCE3BQ5TA77 95 aa5.77□□□□□ -1.49
FNDC1-201ENST00000297267 TNXBP22105 4242 aa5.74□□□□□ -1.49
FNDC1-201ENST00000297267 PKHD1L1Q86WI1 4243 aa5.72□□□□□ -1.49
FNDC1-201ENST00000297267 MT1GP13640 62 aa5.68□□□□□ -1.5
FNDC1-201ENST00000297267 KRTAP4-8A0A0G2JLE6 195 aa5.66□□□□□ -1.5
FNDC1-201ENST00000297267 KRTAP4-8Q9BYQ9 185 aa5.66□□□□□ -1.5
FNDC1-201ENST00000297267 SPRR2EP22531 72 aa5.62□□□□□ -1.51
FNDC1-201ENST00000297267 SPRR2BP35325 72 aa5.62□□□□□ -1.51
FNDC1-201ENST00000297267 SPRR2AP35326 72 aa5.62□□□□□ -1.51
FNDC1-201ENST00000297267 RYR3Q15413 4870 aa5.52□□□□□ -1.53
FNDC1-201ENST00000297267 MT1XP80297 61 aa5.51□□□□□ -1.53
FNDC1-201ENST00000297267 KRTAP19-1Q8IUB9 90 aa5.5□□□□□ -1.53
FNDC1-201ENST00000297267 KRTAP4-7Q9BYR0 210 aa5.49□□□□□ -1.53
FNDC1-201ENST00000297267 LRP2P98164 4655 aa5.43□□□□□ -1.54
FNDC1-201ENST00000297267 KRTAP12-4P60329 112 aa5.38□□□□□ -1.55
FNDC1-201ENST00000297267 SPRR2DP22532 72 aa5.37□□□□□ -1.55
FNDC1-201ENST00000297267 FLGP20930 4061 aaPredicted RBP5.37□□□□□ -1.55
FNDC1-201ENST00000297267 MT1BP07438 61 aa5.36□□□□□ -1.55
FNDC1-201ENST00000297267 KRTAP9-8Q9BYQ0 159 aa5.33□□□□□ -1.56
FNDC1-201ENST00000297267 LCE2BO14633 110 aa5.26□□□□□ -1.57
FNDC1-201ENST00000297267 LOC100996750A0A140TA64 210 aa5.25□□□□□ -1.57
FNDC1-201ENST00000297267 KMT2CQ8NEZ4 4911 aaKnown RBP5.24□□□□□ -1.57
FNDC1-201ENST00000297267 KRTAP19-8Q3LI54 63 aa5.24□□□□□ -1.57
FNDC1-201ENST00000297267 LCE2CQ5TA81 110 aa5.19□□□□□ -1.58
FNDC1-201ENST00000297267 KRTAP9-3Q9BYQ3 159 aa5.16□□□□□ -1.58
FNDC1-201ENST00000297267 KRTAP4-3Q9BYR4 195 aa5.16□□□□□ -1.58
FNDC1-201ENST00000297267 MUC17Q685J3 4493 aa5.09□□□□□ -1.59
FNDC1-201ENST00000297267 LCE3DQ9BYE3 92 aa5.07□□□□□ -1.6
FNDC1-201ENST00000297267 MT4P47944 62 aa5.06□□□□□ -1.6
FNDC1-201ENST00000297267 RYR2Q92736 4967 aa5.05□□□□□ -1.6
FNDC1-201ENST00000297267 KIAA1109Q2LD37 5005 aa4.97□□□□□ -1.61
FNDC1-201ENST00000297267 KRTAP4-9Q9BYQ8 210 aa4.94□□□□□ -1.62
FNDC1-201ENST00000297267 MT1LQ93083 61 aa4.93□□□□□ -1.62
FNDC1-201ENST00000297267 SPRR5A0A1B0GTR4 108 aa4.9□□□□□ -1.62
FNDC1-201ENST00000297267 PRM1P04553 51 aa4.9□□□□□ -1.62
FNDC1-201ENST00000297267 LCE3EQ5T5B0 92 aa4.89□□□□□ -1.63
FNDC1-201ENST00000297267 KRTAP19-3Q7Z4W3 81 aa4.89□□□□□ -1.63
FNDC1-201ENST00000297267 LCE2DQ5TA82 110 aaPredicted RBP4.89□□□□□ -1.63
FNDC1-201ENST00000297267 HERC2O95714 4834 aa4.88□□□□□ -1.63
FNDC1-201ENST00000297267 MT1EP04732 61 aa4.87□□□□□ -1.63
FNDC1-201ENST00000297267 SYNE2Q8WXH0 6885 aaKnown RBP4.86□□□□□ -1.63
FNDC1-201ENST00000297267 KRTAP19-2Q3LHN2 52 aa4.85□□□□□ -1.63
FNDC1-201ENST00000297267 KRTAP19-4Q3LI73 84 aa4.81□□□□□ -1.64
FNDC1-201ENST00000297267 LCE1BQ5T7P3 118 aa4.8□□□□□ -1.64
FNDC1-201ENST00000297267 MT1MQ8N339 61 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 127 ms