RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 DYNC1H1Q14204 4646 aaKnown RBP8.59□□□□□ -1.03
CTCF-201ENST00000264010 VPS13BQ7Z7G8 4022 aa8.58□□□□□ -1.04
CTCF-201ENST00000264010 CAMK2N1Q7Z7J9 78 aa8.57□□□□□ -1.04
CTCF-201ENST00000264010 XP32Q5T750 250 aa8.56□□□□□ -1.04
CTCF-201ENST00000264010 HYDINQ4G0P3 5121 aa8.53□□□□□ -1.04
CTCF-201ENST00000264010 FAT1Q14517 4588 aa8.46□□□□□ -1.05
CTCF-201ENST00000264010 KRTAP3-1Q9BYR8 98 aa8.46□□□□□ -1.05
CTCF-201ENST00000264010 R4GN34 69 aa8.45□□□□□ -1.06
CTCF-201ENST00000264010 SACSQ9NZJ4 4579 aa8.45□□□□□ -1.06
CTCF-201ENST00000264010 PKHD1P08F94 4074 aa8.44□□□□□ -1.06
CTCF-201ENST00000264010 PKD1P98161 4303 aa8.44□□□□□ -1.06
CTCF-201ENST00000264010 M0QZ58 72 aa8.4□□□□□ -1.06
CTCF-201ENST00000264010 SEC61BP60468 96 aaKnown RBP8.39□□□□□ -1.07
CTCF-201ENST00000264010 TPRXLQ17RH7 258 aa8.35□□□□□ -1.07
CTCF-201ENST00000264010 MT1HL1P0DM35 61 aa8.31□□□□□ -1.08
CTCF-201ENST00000264010 PLAC4Q8WY50 150 aa8.3□□□□□ -1.08
CTCF-201ENST00000264010 APOBP04114 4563 aaKnown RBP8.28□□□□□ -1.08
CTCF-201ENST00000264010 RYR2Q92736 4967 aa8.24□□□□□ -1.09
CTCF-201ENST00000264010 MYCBP2O75592 4640 aa8.18□□□□□ -1.1
CTCF-201ENST00000264010 HSPG2P98160 4391 aa8.08□□□□□ -1.12
CTCF-201ENST00000264010 KRTAP3-3Q9BYR6 98 aa8.08□□□□□ -1.12
CTCF-201ENST00000264010 KRTAP10-6P60371 365 aaPredicted RBP8.05□□□□□ -1.12
CTCF-201ENST00000264010 LRP1Q07954 4544 aaKnown RBP8.04□□□□□ -1.12
CTCF-201ENST00000264010 KMT2CQ8NEZ4 4911 aaKnown RBP8.03□□□□□ -1.12
CTCF-201ENST00000264010 RYR1P21817 5038 aa8.02□□□□□ -1.12
CTCF-201ENST00000264010 KRTAP12-2P59991 146 aa8.01□□□□□ -1.13
CTCF-201ENST00000264010 KRTAP4-5Q9BYR2 181 aa8□□□□□ -1.13
CTCF-201ENST00000264010 KIAA1109Q2LD37 5005 aa7.99□□□□□ -1.13
CTCF-201ENST00000264010 KRTAP17-1Q9BYP8 105 aa7.99□□□□□ -1.13
CTCF-201ENST00000264010 FAT3Q8TDW7 4589 aa7.98□□□□□ -1.13
CTCF-201ENST00000264010 LPAP08519 4548 aa7.98□□□□□ -1.13
CTCF-201ENST00000264010 PKHD1L1Q86WI1 4243 aa7.98□□□□□ -1.13
CTCF-201ENST00000264010 RYR3Q15413 4870 aa7.97□□□□□ -1.13
CTCF-201ENST00000264010 KRTAP15-1Q3LI76 137 aa7.97□□□□□ -1.13
CTCF-201ENST00000264010 KRTAP3-2Q9BYR7 98 aa7.96□□□□□ -1.14
CTCF-201ENST00000264010 KRTAP13-4Q3LI77 160 aa7.94□□□□□ -1.14
CTCF-201ENST00000264010 TNXBP22105 4242 aa7.79□□□□□ -1.16
CTCF-201ENST00000264010 KRTAP12-1P59990 96 aa7.78□□□□□ -1.16
CTCF-201ENST00000264010 M0R2T5 61 aa7.74□□□□□ -1.17
CTCF-201ENST00000264010 TNP1P09430 55 aa7.68□□□□□ -1.18
CTCF-201ENST00000264010 LRP2P98164 4655 aa7.64□□□□□ -1.19
CTCF-201ENST00000264010 PP632Q6XCG6 107 aa7.61□□□□□ -1.19
CTCF-201ENST00000264010 KRTAP4-1Q9BYQ7 146 aa7.57□□□□□ -1.2
CTCF-201ENST00000264010 EPPK1P58107 5090 aaKnown RBP7.54□□□□□ -1.2
CTCF-201ENST00000264010 HERC2O95714 4834 aa7.44□□□□□ -1.22
CTCF-201ENST00000264010 LORP23490 312 aaPredicted RBP7.42□□□□□ -1.22
CTCF-201ENST00000264010 ABCA13Q86UQ4 5058 aa7.42□□□□□ -1.22
CTCF-201ENST00000264010 MUC2Q02817 5179 aa7.33□□□□□ -1.24
CTCF-201ENST00000264010 BIRC6Q9NR09 4857 aa7.3□□□□□ -1.24
CTCF-201ENST00000264010 KRTAP10-10P60014 251 aa7.27□□□□□ -1.25
CTCF-201ENST00000264010 PRO2289Q9P1D8 64 aa7.17□□□□□ -1.26
CTCF-201ENST00000264010 KRTAP19-2Q3LHN2 52 aa7.15□□□□□ -1.26
CTCF-201ENST00000264010 MUC17Q685J3 4493 aa7.04□□□□□ -1.28
CTCF-201ENST00000264010 HERC1Q15751 4861 aa7.03□□□□□ -1.28
CTCF-201ENST00000264010 MT1HP80294 61 aa6.99□□□□□ -1.29
CTCF-201ENST00000264010 LCE2CQ5TA81 110 aa6.94□□□□□ -1.3
CTCF-201ENST00000264010 SPRR2GQ9BYE4 73 aa6.94□□□□□ -1.3
CTCF-201ENST00000264010 INE1O15225 51 aa6.93□□□□□ -1.3
CTCF-201ENST00000264010 FLGP20930 4061 aaPredicted RBP6.92□□□□□ -1.3
CTCF-201ENST00000264010 PCLOQ9Y6V0 5065 aa6.9□□□□□ -1.3
CTCF-201ENST00000264010 KRTAP23-1A1A580 65 aa6.88□□□□□ -1.31
CTCF-201ENST00000264010 FAT4Q6V0I7 4981 aa6.88□□□□□ -1.31
CTCF-201ENST00000264010 MT2AP02795 61 aa6.87□□□□□ -1.31
CTCF-201ENST00000264010 MT1FP04733 61 aa6.82□□□□□ -1.32
CTCF-201ENST00000264010 HMCN2Q8NDA2 5059 aa6.82□□□□□ -1.32
CTCF-201ENST00000264010 KRTAP19-1Q8IUB9 90 aa6.81□□□□□ -1.32
CTCF-201ENST00000264010 KRTAP9-8Q9BYQ0 159 aa6.68□□□□□ -1.34
CTCF-201ENST00000264010 LCE3AQ5TA76 89 aa6.65□□□□□ -1.34
CTCF-201ENST00000264010 KRTAP19-8Q3LI54 63 aa6.63□□□□□ -1.35
CTCF-201ENST00000264010 RNF213Q63HN8 5207 aa6.63□□□□□ -1.35
CTCF-201ENST00000264010 KRTAP10-12P60413 245 aa6.59□□□□□ -1.35
CTCF-201ENST00000264010 MT1BP07438 61 aa6.49□□□□□ -1.37
CTCF-201ENST00000264010 UBR4Q5T4S7 5183 aa6.49□□□□□ -1.37
CTCF-201ENST00000264010 KRTAP12-3P60328 96 aa6.46□□□□□ -1.37
CTCF-201ENST00000264010 KRTAP9-3Q9BYQ3 159 aa6.44□□□□□ -1.38
CTCF-201ENST00000264010 MT1XP80297 61 aa6.42□□□□□ -1.38
CTCF-201ENST00000264010 KRTAP10-5P60370 271 aa6.41□□□□□ -1.38
CTCF-201ENST00000264010 KRTAP8-1Q8IUC2 63 aa6.4□□□□□ -1.38
CTCF-201ENST00000264010 CRCT1Q9UGL9 99 aa6.28□□□□□ -1.4
CTCF-201ENST00000264010 KRTAP10-7P60409 375 aaPredicted RBP6.28□□□□□ -1.4
CTCF-201ENST00000264010 SPRR5A0A1B0GTR4 108 aa6.27□□□□□ -1.41
CTCF-201ENST00000264010 KMT2DO14686 5537 aa6.2□□□□□ -1.42
CTCF-201ENST00000264010 LCE2BO14633 110 aa6.18□□□□□ -1.42
CTCF-201ENST00000264010 SYNE1Q8NF91 8797 aaKnown RBP6.17□□□□□ -1.42
CTCF-201ENST00000264010 OBSCNQ5VST9 7968 aa6.14□□□□□ -1.43
CTCF-201ENST00000264010 USH2AO75445 5202 aa6.13□□□□□ -1.43
CTCF-201ENST00000264010 KRTAP19-5Q3LI72 72 aa6.11□□□□□ -1.43
CTCF-201ENST00000264010 LCE2AQ5TA79 106 aaPredicted RBP6.11□□□□□ -1.43
CTCF-201ENST00000264010 LCE3CQ5T5A8 94 aa5.96□□□□□ -1.46
CTCF-201ENST00000264010 KRTAP4-8A0A0G2JLE6 195 aa5.92□□□□□ -1.46
CTCF-201ENST00000264010 KRTAP4-8Q9BYQ9 185 aa5.92□□□□□ -1.46
CTCF-201ENST00000264010 KRTAP19-4Q3LI73 84 aa5.83□□□□□ -1.48
CTCF-201ENST00000264010 KRTAP19-6Q3LI70 58 aa5.69□□□□□ -1.5
CTCF-201ENST00000264010 KRTAP19-7Q3SYF9 63 aa5.66□□□□□ -1.5
CTCF-201ENST00000264010 MT1EP04732 61 aa5.64□□□□□ -1.51
CTCF-201ENST00000264010 MT1LQ93083 61 aa5.62□□□□□ -1.51
CTCF-201ENST00000264010 KRTAP12-4P60329 112 aa5.61□□□□□ -1.51
CTCF-201ENST00000264010 KRTAP4-7Q9BYR0 210 aa5.56□□□□□ -1.52
CTCF-201ENST00000264010 KRTAP9-6A8MVA2 160 aa5.56□□□□□ -1.52
CTCF-201ENST00000264010 FSIP2Q5CZC0 6907 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms