RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 TNXBP22105 4242 aa11.17□□□□□ -0.62
TRIM28-201ENST00000253024 LPAP08519 4548 aa11.16□□□□□ -0.62
TRIM28-201ENST00000253024 KRTAP17-1Q9BYP8 105 aa11.14□□□□□ -0.63
TRIM28-201ENST00000253024 COX6B2Q6YFQ2 88 aa11.13□□□□□ -0.63
TRIM28-201ENST00000253024 H3BS24 57 aa11.12□□□□□ -0.63
TRIM28-201ENST00000253024 KRTAP10-8P60410 259 aa11.11□□□□□ -0.63
TRIM28-201ENST00000253024 H1FX-AS1Q4G0G2 97 aa11.1□□□□□ -0.63
TRIM28-201ENST00000253024 A0A0D9SG42 100 aa11.09□□□□□ -0.63
TRIM28-201ENST00000253024 KRTAP21-3Q3LHN1 58 aa11.01□□□□□ -0.65
TRIM28-201ENST00000253024 LRP2P98164 4655 aa11□□□□□ -0.65
TRIM28-201ENST00000253024 XP32Q5T750 250 aa10.98□□□□□ -0.65
TRIM28-201ENST00000253024 RYR1P21817 5038 aa10.97□□□□□ -0.65
TRIM28-201ENST00000253024 RPL37P61927 97 aaKnown RBP10.91□□□□□ -0.66
TRIM28-201ENST00000253024 KRTAP3-3Q9BYR6 98 aa10.91□□□□□ -0.66
TRIM28-201ENST00000253024 KRTAP13-4Q3LI77 160 aa10.9□□□□□ -0.66
TRIM28-201ENST00000253024 EPPK1P58107 5090 aaKnown RBP10.87□□□□□ -0.67
TRIM28-201ENST00000253024 ABCA13Q86UQ4 5058 aa10.84□□□□□ -0.67
TRIM28-201ENST00000253024 P0C880 135 aa10.84□□□□□ -0.67
TRIM28-201ENST00000253024 S4R3F8 94 aa10.83□□□□□ -0.68
TRIM28-201ENST00000253024 KRTAP10-6P60371 365 aaPredicted RBP10.83□□□□□ -0.68
TRIM28-201ENST00000253024 K7ERS5 55 aa10.77□□□□□ -0.68
TRIM28-201ENST00000253024 MT1HL1P0DM35 61 aa10.74□□□□□ -0.69
TRIM28-201ENST00000253024 KRTAP3-2Q9BYR7 98 aa10.72□□□□□ -0.69
TRIM28-201ENST00000253024 KRTAP25-1Q3LHN0 102 aa10.71□□□□□ -0.69
TRIM28-201ENST00000253024 SPINT4Q6UDR6 99 aa10.63□□□□□ -0.71
TRIM28-201ENST00000253024 KRTAP4-5Q9BYR2 181 aa10.63□□□□□ -0.71
TRIM28-201ENST00000253024 C10orf95Q9H7T3 257 aa10.62□□□□□ -0.71
TRIM28-201ENST00000253024 ROMO1P60602 79 aa10.61□□□□□ -0.71
TRIM28-201ENST00000253024 KRTAP12-2P59991 146 aa10.53□□□□□ -0.72
TRIM28-201ENST00000253024 MUC2Q02817 5179 aa10.48□□□□□ -0.73
TRIM28-201ENST00000253024 TPRXLQ17RH7 258 aa10.42□□□□□ -0.74
TRIM28-201ENST00000253024 KRTAP12-1P59990 96 aa10.32□□□□□ -0.76
TRIM28-201ENST00000253024 M0QZ58 72 aa10.28□□□□□ -0.76
TRIM28-201ENST00000253024 HERC2O95714 4834 aa10.23□□□□□ -0.77
TRIM28-201ENST00000253024 LORP23490 312 aaPredicted RBP10.21□□□□□ -0.78
TRIM28-201ENST00000253024 KRTAP4-1Q9BYQ7 146 aa10.2□□□□□ -0.78
TRIM28-201ENST00000253024 J3QL48 77 aa10.19□□□□□ -0.78
TRIM28-201ENST00000253024 R4GN34 69 aa10.18□□□□□ -0.78
TRIM28-201ENST00000253024 MUC17Q685J3 4493 aa10.11□□□□□ -0.79
TRIM28-201ENST00000253024 NDUFAF8A1L188 74 aa10.05□□□□□ -0.8
TRIM28-201ENST00000253024 SEC61BP60468 96 aaKnown RBP10.02□□□□□ -0.81
TRIM28-201ENST00000253024 HERC1Q15751 4861 aa9.99□□□□□ -0.81
TRIM28-201ENST00000253024 FAT4Q6V0I7 4981 aa9.93□□□□□ -0.82
TRIM28-201ENST00000253024 KRTAP15-1Q3LI76 137 aa9.83□□□□□ -0.84
TRIM28-201ENST00000253024 PCLOQ9Y6V0 5065 aa9.81□□□□□ -0.84
TRIM28-201ENST00000253024 RNF213Q63HN8 5207 aa9.75□□□□□ -0.85
TRIM28-201ENST00000253024 CAMK2N1Q7Z7J9 78 aa9.75□□□□□ -0.85
TRIM28-201ENST00000253024 KRTAP19-2Q3LHN2 52 aa9.69□□□□□ -0.86
TRIM28-201ENST00000253024 FLGP20930 4061 aaPredicted RBP9.57□□□□□ -0.88
TRIM28-201ENST00000253024 BIRC6Q9NR09 4857 aa9.56□□□□□ -0.88
TRIM28-201ENST00000253024 UBR4Q5T4S7 5183 aa9.5□□□□□ -0.89
TRIM28-201ENST00000253024 HMCN2Q8NDA2 5059 aa9.5□□□□□ -0.89
TRIM28-201ENST00000253024 PLAC4Q8WY50 150 aa9.42□□□□□ -0.9
TRIM28-201ENST00000253024 M0R2T5 61 aa9.4□□□□□ -0.9
TRIM28-201ENST00000253024 LCE2CQ5TA81 110 aa9.2□□□□□ -0.94
TRIM28-201ENST00000253024 TNP1P09430 55 aa9.16□□□□□ -0.94
TRIM28-201ENST00000253024 LUZP6Q538Z0 58 aa9.14□□□□□ -0.95
TRIM28-201ENST00000253024 A0A0A0MQY5 61 aa9.13□□□□□ -0.95
TRIM28-201ENST00000253024 KRTAP10-10P60014 251 aa9.06□□□□□ -0.96
TRIM28-201ENST00000253024 PP632Q6XCG6 107 aa9.05□□□□□ -0.96
TRIM28-201ENST00000253024 KRTAP19-1Q8IUB9 90 aa9.04□□□□□ -0.96
TRIM28-201ENST00000253024 MT1HP80294 61 aa9.01□□□□□ -0.97
TRIM28-201ENST00000253024 MT1FP04733 61 aa8.96□□□□□ -0.97
TRIM28-201ENST00000253024 MT2AP02795 61 aa8.88□□□□□ -0.99
TRIM28-201ENST00000253024 SPRR2GQ9BYE4 73 aa8.88□□□□□ -0.99
TRIM28-201ENST00000253024 LCE3AQ5TA76 89 aa8.83□□□□□ -1
TRIM28-201ENST00000253024 USH2AO75445 5202 aa8.79□□□□□ -1
TRIM28-201ENST00000253024 KRTAP9-8Q9BYQ0 159 aa8.76□□□□□ -1.01
TRIM28-201ENST00000253024 KMT2DO14686 5537 aa8.62□□□□□ -1.03
TRIM28-201ENST00000253024 MT1BP07438 61 aa8.56□□□□□ -1.04
TRIM28-201ENST00000253024 KRTAP10-5P60370 271 aa8.52□□□□□ -1.05
TRIM28-201ENST00000253024 MT1XP80297 61 aa8.51□□□□□ -1.05
TRIM28-201ENST00000253024 KRTAP23-1A1A580 65 aa8.49□□□□□ -1.05
TRIM28-201ENST00000253024 KRTAP10-7P60409 375 aaPredicted RBP8.46□□□□□ -1.06
TRIM28-201ENST00000253024 SPRR5A0A1B0GTR4 108 aa8.42□□□□□ -1.06
TRIM28-201ENST00000253024 KRTAP19-8Q3LI54 63 aa8.42□□□□□ -1.06
TRIM28-201ENST00000253024 KRTAP10-12P60413 245 aa8.38□□□□□ -1.07
TRIM28-201ENST00000253024 KRTAP9-3Q9BYQ3 159 aa8.35□□□□□ -1.07
TRIM28-201ENST00000253024 FSIP2Q5CZC0 6907 aa8.31□□□□□ -1.08
TRIM28-201ENST00000253024 KRTAP12-3P60328 96 aa8.31□□□□□ -1.08
TRIM28-201ENST00000253024 KRTAP8-1Q8IUC2 63 aa8.28□□□□□ -1.08
TRIM28-201ENST00000253024 LCE2BO14633 110 aa8.19□□□□□ -1.1
TRIM28-201ENST00000253024 KRTAP4-8A0A0G2JLE6 195 aa8.1□□□□□ -1.11
TRIM28-201ENST00000253024 KRTAP4-8Q9BYQ9 185 aa8.1□□□□□ -1.11
TRIM28-201ENST00000253024 PRO2289Q9P1D8 64 aa8.06□□□□□ -1.12
TRIM28-201ENST00000253024 KRTAP19-5Q3LI72 72 aa8.06□□□□□ -1.12
TRIM28-201ENST00000253024 KRTAP4-7Q9BYR0 210 aa7.84□□□□□ -1.15
TRIM28-201ENST00000253024 LCE2AQ5TA79 106 aaPredicted RBP7.78□□□□□ -1.16
TRIM28-201ENST00000253024 LCE3CQ5T5A8 94 aa7.75□□□□□ -1.17
TRIM28-201ENST00000253024 SSPOA2VEC9 5147 aa7.71□□□□□ -1.17
TRIM28-201ENST00000253024 INE1O15225 51 aa7.7□□□□□ -1.18
TRIM28-201ENST00000253024 KRTAP9-6A8MVA2 160 aa7.67□□□□□ -1.18
TRIM28-201ENST00000253024 KRTAP19-7Q3SYF9 63 aa7.57□□□□□ -1.2
TRIM28-201ENST00000253024 DSTQ03001 7570 aaKnown RBP7.57□□□□□ -1.2
TRIM28-201ENST00000253024 MUC12Q9UKN1 5478 aa7.55□□□□□ -1.2
TRIM28-201ENST00000253024 FCGBPQ9Y6R7 5405 aaPredicted RBP7.51□□□□□ -1.21
TRIM28-201ENST00000253024 KRTAP4-3Q9BYR4 195 aa7.35□□□□□ -1.23
TRIM28-201ENST00000253024 MT1LQ93083 61 aa7.33□□□□□ -1.24
TRIM28-201ENST00000253024 CRCT1Q9UGL9 99 aa7.32□□□□□ -1.24
TRIM28-201ENST00000253024 MT1EP04732 61 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 127.2 ms