RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 C20orf166-AS1Q96NR2 134 aa6.31□□□□□ -1.4
USHBP1-201ENST00000252597 APOBP04114 4563 aaKnown RBP6.31□□□□□ -1.4
USHBP1-201ENST00000252597 C10orf95Q9H7T3 257 aa6.29□□□□□ -1.4
USHBP1-201ENST00000252597 KIAA1109Q2LD37 5005 aa6.26□□□□□ -1.41
USHBP1-201ENST00000252597 ROMO1P60602 79 aa6.25□□□□□ -1.41
USHBP1-201ENST00000252597 RPL37P61927 97 aaKnown RBP6.24□□□□□ -1.41
USHBP1-201ENST00000252597 KRTAP10-4P60372 401 aaPredicted RBP6.21□□□□□ -1.42
USHBP1-201ENST00000252597 Q5VSD8 79 aa6.21□□□□□ -1.42
USHBP1-201ENST00000252597 KRTAP13-4Q3LI77 160 aa6.2□□□□□ -1.42
USHBP1-201ENST00000252597 S4R3F8 94 aa6.2□□□□□ -1.42
USHBP1-201ENST00000252597 P0C880 135 aa6.2□□□□□ -1.42
USHBP1-201ENST00000252597 A0A0A0MQY5 61 aa6.19□□□□□ -1.42
USHBP1-201ENST00000252597 KRTAP10-8P60410 259 aa6.19□□□□□ -1.42
USHBP1-201ENST00000252597 RPS29P62273 56 aaKnown RBP6.19□□□□□ -1.42
USHBP1-201ENST00000252597 EPPK1P58107 5090 aaKnown RBP6.17□□□□□ -1.42
USHBP1-201ENST00000252597 RYR1P21817 5038 aa6.15□□□□□ -1.42
USHBP1-201ENST00000252597 KRTAP10-6P60371 365 aaPredicted RBP6.11□□□□□ -1.43
USHBP1-201ENST00000252597 HSPG2P98160 4391 aa6.1□□□□□ -1.43
USHBP1-201ENST00000252597 TPRXLQ17RH7 258 aa6.09□□□□□ -1.43
USHBP1-201ENST00000252597 XP32Q5T750 250 aa6.08□□□□□ -1.44
USHBP1-201ENST00000252597 PKHD1L1Q86WI1 4243 aa6.07□□□□□ -1.44
USHBP1-201ENST00000252597 KRTAP17-1Q9BYP8 105 aa6.07□□□□□ -1.44
USHBP1-201ENST00000252597 KRTAP3-3Q9BYR6 98 aa6.07□□□□□ -1.44
USHBP1-201ENST00000252597 NDUFAF8A1L188 74 aa6.06□□□□□ -1.44
USHBP1-201ENST00000252597 KRTAP12-2P59991 146 aa6.05□□□□□ -1.44
USHBP1-201ENST00000252597 KRTAP4-5Q9BYR2 181 aa6.03□□□□□ -1.44
USHBP1-201ENST00000252597 LRP2P98164 4655 aa6.03□□□□□ -1.44
USHBP1-201ENST00000252597 LPAP08519 4548 aa6.02□□□□□ -1.45
USHBP1-201ENST00000252597 KRTAP3-2Q9BYR7 98 aa6.02□□□□□ -1.45
USHBP1-201ENST00000252597 TNXBP22105 4242 aa5.97□□□□□ -1.45
USHBP1-201ENST00000252597 M0QZ58 72 aa5.96□□□□□ -1.45
USHBP1-201ENST00000252597 J3QL48 77 aa5.96□□□□□ -1.46
USHBP1-201ENST00000252597 R4GN34 69 aa5.92□□□□□ -1.46
USHBP1-201ENST00000252597 ABCA13Q86UQ4 5058 aa5.92□□□□□ -1.46
USHBP1-201ENST00000252597 KRTAP12-1P59990 96 aa5.9□□□□□ -1.47
USHBP1-201ENST00000252597 MUC2Q02817 5179 aa5.89□□□□□ -1.47
USHBP1-201ENST00000252597 MT1HL1P0DM35 61 aa5.87□□□□□ -1.47
USHBP1-201ENST00000252597 BIRC6Q9NR09 4857 aa5.86□□□□□ -1.47
USHBP1-201ENST00000252597 HERC2O95714 4834 aa5.85□□□□□ -1.47
USHBP1-201ENST00000252597 CAMK2N1Q7Z7J9 78 aa5.76□□□□□ -1.49
USHBP1-201ENST00000252597 LUZP6Q538Z0 58 aa5.75□□□□□ -1.49
USHBP1-201ENST00000252597 KRTAP15-1Q3LI76 137 aa5.72□□□□□ -1.49
USHBP1-201ENST00000252597 PCLOQ9Y6V0 5065 aa5.71□□□□□ -1.5
USHBP1-201ENST00000252597 LORP23490 312 aaPredicted RBP5.71□□□□□ -1.5
USHBP1-201ENST00000252597 HERC1Q15751 4861 aa5.65□□□□□ -1.51
USHBP1-201ENST00000252597 PLAC4Q8WY50 150 aa5.62□□□□□ -1.51
USHBP1-201ENST00000252597 RNF213Q63HN8 5207 aa5.61□□□□□ -1.51
USHBP1-201ENST00000252597 FAT4Q6V0I7 4981 aa5.6□□□□□ -1.51
USHBP1-201ENST00000252597 SEC61BP60468 96 aaKnown RBP5.59□□□□□ -1.51
USHBP1-201ENST00000252597 KRTAP4-1Q9BYQ7 146 aa5.51□□□□□ -1.53
USHBP1-201ENST00000252597 UBR4Q5T4S7 5183 aa5.42□□□□□ -1.54
USHBP1-201ENST00000252597 M0R2T5 61 aa5.41□□□□□ -1.54
USHBP1-201ENST00000252597 MUC17Q685J3 4493 aa5.36□□□□□ -1.55
USHBP1-201ENST00000252597 HMCN2Q8NDA2 5059 aa5.35□□□□□ -1.55
USHBP1-201ENST00000252597 TNP1P09430 55 aa5.33□□□□□ -1.56
USHBP1-201ENST00000252597 PP632Q6XCG6 107 aa5.27□□□□□ -1.57
USHBP1-201ENST00000252597 KRTAP19-2Q3LHN2 52 aa5.2□□□□□ -1.58
USHBP1-201ENST00000252597 FLGP20930 4061 aaPredicted RBP5.11□□□□□ -1.59
USHBP1-201ENST00000252597 KRTAP10-10P60014 251 aa5.1□□□□□ -1.59
USHBP1-201ENST00000252597 FSIP2Q5CZC0 6907 aa5.09□□□□□ -1.6
USHBP1-201ENST00000252597 USH2AO75445 5202 aa5.05□□□□□ -1.6
USHBP1-201ENST00000252597 LCE3AQ5TA76 89 aa5.03□□□□□ -1.6
USHBP1-201ENST00000252597 LCE2CQ5TA81 110 aa5.03□□□□□ -1.6
USHBP1-201ENST00000252597 LCE2DQ5TA82 110 aaPredicted RBP5□□□□□ -1.61
USHBP1-201ENST00000252597 MT1HP80294 61 aa4.94□□□□□ -1.62
USHBP1-201ENST00000252597 KRTAP19-1Q8IUB9 90 aa4.92□□□□□ -1.62
USHBP1-201ENST00000252597 KMT2DO14686 5537 aa4.9□□□□□ -1.63
USHBP1-201ENST00000252597 MT1FP04733 61 aa4.86□□□□□ -1.63
USHBP1-201ENST00000252597 SPRR2GQ9BYE4 73 aa4.83□□□□□ -1.64
USHBP1-201ENST00000252597 MT2AP02795 61 aa4.81□□□□□ -1.64
USHBP1-201ENST00000252597 PRO2289Q9P1D8 64 aa4.8□□□□□ -1.64
USHBP1-201ENST00000252597 KRTAP9-8Q9BYQ0 159 aa4.77□□□□□ -1.65
USHBP1-201ENST00000252597 SPRR5A0A1B0GTR4 108 aa4.76□□□□□ -1.65
USHBP1-201ENST00000252597 KRTAP23-1A1A580 65 aa4.76□□□□□ -1.65
USHBP1-201ENST00000252597 KRTAP12-3P60328 96 aa4.75□□□□□ -1.65
USHBP1-201ENST00000252597 KRTAP10-12P60413 245 aa4.75□□□□□ -1.65
USHBP1-201ENST00000252597 KRTAP10-7P60409 375 aaPredicted RBP4.68□□□□□ -1.66
USHBP1-201ENST00000252597 KRTAP10-5P60370 271 aa4.65□□□□□ -1.67
USHBP1-201ENST00000252597 MT1XP80297 61 aa4.65□□□□□ -1.67
USHBP1-201ENST00000252597 LCE2AQ5TA79 106 aaPredicted RBP4.64□□□□□ -1.67
USHBP1-201ENST00000252597 KRTAP8-1Q8IUC2 63 aa4.63□□□□□ -1.67
USHBP1-201ENST00000252597 MT1BP07438 61 aa4.63□□□□□ -1.67
USHBP1-201ENST00000252597 KRTAP9-3Q9BYQ3 159 aa4.57□□□□□ -1.68
USHBP1-201ENST00000252597 KRTAP19-8Q3LI54 63 aa4.55□□□□□ -1.68
USHBP1-201ENST00000252597 INE1O15225 51 aa4.55□□□□□ -1.68
USHBP1-201ENST00000252597 KRTAP19-5Q3LI72 72 aa4.52□□□□□ -1.69
USHBP1-201ENST00000252597 DSTQ03001 7570 aaKnown RBP4.5□□□□□ -1.69
USHBP1-201ENST00000252597 KRTAP4-8A0A0G2JLE6 195 aa4.5□□□□□ -1.69
USHBP1-201ENST00000252597 KRTAP4-8Q9BYQ9 185 aa4.5□□□□□ -1.69
USHBP1-201ENST00000252597 LCE2BO14633 110 aa4.47□□□□□ -1.69
USHBP1-201ENST00000252597 OBSCNQ5VST9 7968 aa4.45□□□□□ -1.7
USHBP1-201ENST00000252597 KRTAP4-7Q9BYR0 210 aa4.43□□□□□ -1.7
USHBP1-201ENST00000252597 LCE3CQ5T5A8 94 aa4.38□□□□□ -1.71
USHBP1-201ENST00000252597 FCGBPQ9Y6R7 5405 aaPredicted RBP4.37□□□□□ -1.71
USHBP1-201ENST00000252597 MUC12Q9UKN1 5478 aa4.35□□□□□ -1.71
USHBP1-201ENST00000252597 CRCT1Q9UGL9 99 aa4.33□□□□□ -1.72
USHBP1-201ENST00000252597 SYNE1Q8NF91 8797 aaKnown RBP4.31□□□□□ -1.72
USHBP1-201ENST00000252597 SSPOA2VEC9 5147 aa4.31□□□□□ -1.72
USHBP1-201ENST00000252597 KRTAP9-6A8MVA2 160 aa4.27□□□□□ -1.73
USHBP1-201ENST00000252597 KRTAP9-2Q9BYQ4 174 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms