RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 LORP23490 312 aaPredicted RBP4.43□□□□□ -1.7
VCL-201ENST00000211998 KRTAP4-5Q9BYR2 181 aa4.42□□□□□ -1.7
VCL-201ENST00000211998 ALMS1Q8TCU4 4167 aa4.36□□□□□ -1.71
VCL-201ENST00000211998 HUWE1Q7Z6Z7 4374 aaKnown RBP4.31□□□□□ -1.72
VCL-201ENST00000211998 KRTAP10-5P60370 271 aa4.29□□□□□ -1.72
VCL-201ENST00000211998 ANK2Q01484 3957 aa4.26□□□□□ -1.73
VCL-201ENST00000211998 KRTAP8-1Q8IUC2 63 aa4.21□□□□□ -1.74
VCL-201ENST00000211998 PRKDCP78527 4128 aaKnown RBP4.18□□□□□ -1.74
VCL-201ENST00000211998 CSMD3Q7Z407 3707 aa4.14□□□□□ -1.75
VCL-201ENST00000211998 DNAH9Q9NYC9 4486 aa4.13□□□□□ -1.75
VCL-201ENST00000211998 CMYA5Q8N3K9 4069 aa4.12□□□□□ -1.75
VCL-201ENST00000211998 MT1HP80294 61 aa4.09□□□□□ -1.76
VCL-201ENST00000211998 DNAH2Q9P225 4427 aa4.06□□□□□ -1.76
VCL-201ENST00000211998 KRTAP4-1Q9BYQ7 146 aa4.06□□□□□ -1.76
VCL-201ENST00000211998 DNAH5Q8TE73 4624 aa4.06□□□□□ -1.76
VCL-201ENST00000211998 SPRR2GQ9BYE4 73 aa4.04□□□□□ -1.76
VCL-201ENST00000211998 DNAH1Q9P2D7 4330 aa4.04□□□□□ -1.76
VCL-201ENST00000211998 MT2AP02795 61 aa4.03□□□□□ -1.76
VCL-201ENST00000211998 DNAH10Q8IVF4 4471 aa4.03□□□□□ -1.76
VCL-201ENST00000211998 DNAH11Q96DT5 4516 aa4.02□□□□□ -1.77
VCL-201ENST00000211998 VPS13DQ5THJ4 4388 aa4.01□□□□□ -1.77
VCL-201ENST00000211998 DNAH17Q9UFH2 4485 aa4□□□□□ -1.77
VCL-201ENST00000211998 KMT2CQ8NEZ4 4911 aaKnown RBP4□□□□□ -1.77
VCL-201ENST00000211998 PLECQ15149 4684 aaKnown RBP3.99□□□□□ -1.77
VCL-201ENST00000211998 DNAH3Q8TD57 4116 aa3.98□□□□□ -1.77
VCL-201ENST00000211998 DNAH8Q96JB1 4490 aa3.97□□□□□ -1.77
VCL-201ENST00000211998 LCE3CQ5T5A8 94 aa3.97□□□□□ -1.77
VCL-201ENST00000211998 KRTAP19-4Q3LI73 84 aa3.93□□□□□ -1.78
VCL-201ENST00000211998 RYR3Q15413 4870 aa3.93□□□□□ -1.78
VCL-201ENST00000211998 STARD9Q9P2P6 4700 aa3.92□□□□□ -1.78
VCL-201ENST00000211998 MT1FP04733 61 aa3.92□□□□□ -1.78
VCL-201ENST00000211998 KRTAP19-5Q3LI72 72 aa3.92□□□□□ -1.78
VCL-201ENST00000211998 KRTAP10-7P60409 375 aaPredicted RBP3.9□□□□□ -1.78
VCL-201ENST00000211998 FAT1Q14517 4588 aa3.89□□□□□ -1.79
VCL-201ENST00000211998 SPRR5A0A1B0GTR4 108 aa3.88□□□□□ -1.79
VCL-201ENST00000211998 SPRR2FQ96RM1 72 aa3.88□□□□□ -1.79
VCL-201ENST00000211998 LYSTQ99698 3801 aa3.87□□□□□ -1.79
VCL-201ENST00000211998 HYDINQ4G0P3 5121 aa3.86□□□□□ -1.79
VCL-201ENST00000211998 SACSQ9NZJ4 4579 aa3.86□□□□□ -1.79
VCL-201ENST00000211998 DYNC1H1Q14204 4646 aaKnown RBP3.85□□□□□ -1.79
VCL-201ENST00000211998 DYNC2H1Q8NCM8 4307 aaKnown RBP3.84□□□□□ -1.8
VCL-201ENST00000211998 EPPK1P58107 5090 aaKnown RBP3.84□□□□□ -1.8
VCL-201ENST00000211998 RYR2Q92736 4967 aa3.83□□□□□ -1.8
VCL-201ENST00000211998 KMT2AQ03164 3969 aa3.83□□□□□ -1.8
VCL-201ENST00000211998 DNAH7Q8WXX0 4024 aa3.81□□□□□ -1.8
VCL-201ENST00000211998 DNAH6Q9C0G6 4158 aa3.78□□□□□ -1.8
VCL-201ENST00000211998 KRTAP12-4P60329 112 aa3.78□□□□□ -1.8
VCL-201ENST00000211998 FRAS1Q86XX4 4008 aa3.78□□□□□ -1.8
VCL-201ENST00000211998 LRP1BQ9NZR2 4599 aa3.78□□□□□ -1.8
VCL-201ENST00000211998 FAT2Q9NYQ8 4349 aa3.77□□□□□ -1.81
VCL-201ENST00000211998 KRTAP19-8Q3LI54 63 aa3.76□□□□□ -1.81
VCL-201ENST00000211998 BIRC6Q9NR09 4857 aa3.74□□□□□ -1.81
VCL-201ENST00000211998 KIAA1109Q2LD37 5005 aa3.73□□□□□ -1.81
VCL-201ENST00000211998 RYR1P21817 5038 aa3.73□□□□□ -1.81
VCL-201ENST00000211998 APOBP04114 4563 aaKnown RBP3.69□□□□□ -1.82
VCL-201ENST00000211998 KRTAP17-1Q9BYP8 105 aa3.68□□□□□ -1.82
VCL-201ENST00000211998 PKHD1P08F94 4074 aa3.68□□□□□ -1.82
VCL-201ENST00000211998 KRTAP19-1Q8IUB9 90 aa3.67□□□□□ -1.82
VCL-201ENST00000211998 SPRR2EP22531 72 aa3.66□□□□□ -1.82
VCL-201ENST00000211998 SPRR2BP35325 72 aa3.66□□□□□ -1.82
VCL-201ENST00000211998 SPRR2AP35326 72 aa3.66□□□□□ -1.82
VCL-201ENST00000211998 LCE3BQ5TA77 95 aa3.65□□□□□ -1.83
VCL-201ENST00000211998 VPS13BQ7Z7G8 4022 aa3.63□□□□□ -1.83
VCL-201ENST00000211998 HERC1Q15751 4861 aa3.63□□□□□ -1.83
VCL-201ENST00000211998 LRP1Q07954 4544 aaKnown RBP3.62□□□□□ -1.83
VCL-201ENST00000211998 MT1XP80297 61 aa3.61□□□□□ -1.83
VCL-201ENST00000211998 HECTD4Q9Y4D8 3996 aa3.6□□□□□ -1.83
VCL-201ENST00000211998 HERC2O95714 4834 aa3.58□□□□□ -1.84
VCL-201ENST00000211998 PCLOQ9Y6V0 5065 aa3.57□□□□□ -1.84
VCL-201ENST00000211998 FAT3Q8TDW7 4589 aa3.57□□□□□ -1.84
VCL-201ENST00000211998 MT1BP07438 61 aa3.57□□□□□ -1.84
VCL-201ENST00000211998 ABCA13Q86UQ4 5058 aa3.56□□□□□ -1.84
VCL-201ENST00000211998 PKD1P98161 4303 aa3.56□□□□□ -1.84
VCL-201ENST00000211998 MT1GP13640 62 aa3.56□□□□□ -1.84
VCL-201ENST00000211998 SPRR2DP22532 72 aa3.55□□□□□ -1.84
VCL-201ENST00000211998 HSPG2P98160 4391 aa3.55□□□□□ -1.84
VCL-201ENST00000211998 LCE2BO14633 110 aa3.54□□□□□ -1.84
VCL-201ENST00000211998 KRTAP9-8Q9BYQ0 159 aa3.54□□□□□ -1.84
VCL-201ENST00000211998 LCE3DQ9BYE3 92 aa3.51□□□□□ -1.85
VCL-201ENST00000211998 MYCBP2O75592 4640 aa3.5□□□□□ -1.85
VCL-201ENST00000211998 LCE3EQ5T5B0 92 aa3.48□□□□□ -1.85
VCL-201ENST00000211998 KRTAP9-3Q9BYQ3 159 aa3.48□□□□□ -1.85
VCL-201ENST00000211998 LCE2CQ5TA81 110 aa3.44□□□□□ -1.86
VCL-201ENST00000211998 KRTAP4-8A0A0G2JLE6 195 aa3.43□□□□□ -1.86
VCL-201ENST00000211998 KRTAP4-8Q9BYQ9 185 aa3.43□□□□□ -1.86
VCL-201ENST00000211998 KRTAP4-7Q9BYR0 210 aa3.39□□□□□ -1.87
VCL-201ENST00000211998 PRM1P04553 51 aa3.37□□□□□ -1.87
VCL-201ENST00000211998 KRTAP19-3Q7Z4W3 81 aa3.37□□□□□ -1.87
VCL-201ENST00000211998 PKHD1L1Q86WI1 4243 aa3.34□□□□□ -1.87
VCL-201ENST00000211998 UBR4Q5T4S7 5183 aa3.33□□□□□ -1.88
VCL-201ENST00000211998 MT1LQ93083 61 aa3.32□□□□□ -1.88
VCL-201ENST00000211998 LRP2P98164 4655 aa3.3□□□□□ -1.88
VCL-201ENST00000211998 MT1EP04732 61 aa3.28□□□□□ -1.88
VCL-201ENST00000211998 RNF213Q63HN8 5207 aa3.26□□□□□ -1.89
VCL-201ENST00000211998 TNXBP22105 4242 aa3.25□□□□□ -1.89
VCL-201ENST00000211998 KRTAP19-2Q3LHN2 52 aa3.25□□□□□ -1.89
VCL-201ENST00000211998 LCE2DQ5TA82 110 aaPredicted RBP3.24□□□□□ -1.89
VCL-201ENST00000211998 LPAP08519 4548 aa3.24□□□□□ -1.89
VCL-201ENST00000211998 HMCN2Q8NDA2 5059 aa3.22□□□□□ -1.89
VCL-201ENST00000211998 KRTAP19-6Q3LI70 58 aa3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms