RNA–Protein interactions for RNA: ENST00000617310.4

SMARCA1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

TSL 2

Gene SMARCA1, Length 4,291 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-205ENST00000617310 M0R2T5 61 aa6.11□□□□□ -1.43
SMARCA1-205ENST00000617310 C1orf195Q5TG92 126 aa6.09□□□□□ -1.43
SMARCA1-205ENST00000617310 CD164Q04900 197 aa6.09□□□□□ -1.43
SMARCA1-205ENST00000617310 DNAH3Q8TD57 4116 aa6.09□□□□□ -1.43
SMARCA1-205ENST00000617310 KLKP1Q107X0 134 aa6.08□□□□□ -1.44
SMARCA1-205ENST00000617310 A0A087X002 238 aa6.07□□□□□ -1.44
SMARCA1-205ENST00000617310 KRTAP11-1Q8IUC1 163 aa6.07□□□□□ -1.44
SMARCA1-205ENST00000617310 Q6ZRN7 208 aaPredicted RBP6.07□□□□□ -1.44
SMARCA1-205ENST00000617310 H7BZZ5 65 aa6.06□□□□□ -1.44
SMARCA1-205ENST00000617310 A0A0D9SG42 100 aa6.06□□□□□ -1.44
SMARCA1-205ENST00000617310 Q8N9P0 234 aaPredicted RBP6.05□□□□□ -1.44
SMARCA1-205ENST00000617310 SPRR1BP22528 89 aa6.04□□□□□ -1.44
SMARCA1-205ENST00000617310 MMP24-AS1A0A0U1RRL7 71 aa6.03□□□□□ -1.44
SMARCA1-205ENST00000617310 OCR1Q9BZK8 76 aa6.03□□□□□ -1.44
SMARCA1-205ENST00000617310 COL7A1Q02388 2944 aa6.02□□□□□ -1.45
SMARCA1-205ENST00000617310 LINC00472Q9H8W2 130 aa6.01□□□□□ -1.45
SMARCA1-205ENST00000617310 KRTAP21-3Q3LHN1 58 aa6.01□□□□□ -1.45
SMARCA1-205ENST00000617310 HRES1P13985 223 aa6□□□□□ -1.45
SMARCA1-205ENST00000617310 SPINT4Q6UDR6 99 aa5.99□□□□□ -1.45
SMARCA1-205ENST00000617310 KRTAP4-16G5E9R7 235 aaPredicted RBP5.99□□□□□ -1.45
SMARCA1-205ENST00000617310 UQCR11O14957 56 aa5.99□□□□□ -1.45
SMARCA1-205ENST00000617310 SPINK7P58062 85 aa5.99□□□□□ -1.45
SMARCA1-205ENST00000617310 ZCCHC13Q8WW36 166 aaKnown RBP5.98□□□□□ -1.45
SMARCA1-205ENST00000617310 RPS28P62857 69 aaKnown RBP5.97□□□□□ -1.45
SMARCA1-205ENST00000617310 KRTAP7-1Q8IUC3 87 aa5.97□□□□□ -1.45
SMARCA1-205ENST00000617310 MIR22HGQ0VDD5 57 aa5.93□□□□□ -1.46
SMARCA1-205ENST00000617310 Q5W150 140 aa5.93□□□□□ -1.46
SMARCA1-205ENST00000617310 SEC61BP60468 96 aaKnown RBP5.92□□□□□ -1.46
SMARCA1-205ENST00000617310 CYP4F30PQ9H0H9 118 aa5.91□□□□□ -1.46
SMARCA1-205ENST00000617310 LINC00483Q53H64 154 aa5.9□□□□□ -1.46
SMARCA1-205ENST00000617310 NOTCH2NLQ7Z3S9 236 aa5.9□□□□□ -1.47
SMARCA1-205ENST00000617310 PRO0628Q9UI54 55 aa5.9□□□□□ -1.47
SMARCA1-205ENST00000617310 DNAH7Q8WXX0 4024 aa5.89□□□□□ -1.47
SMARCA1-205ENST00000617310 SPANXA2-OT1Q8N9U9 137 aa5.88□□□□□ -1.47
SMARCA1-205ENST00000617310 CSAG1Q6PB30 78 aa5.87□□□□□ -1.47
SMARCA1-205ENST00000617310 CYSTM1Q9H1C7 97 aa5.87□□□□□ -1.47
SMARCA1-205ENST00000617310 DNAH1Q9P2D7 4330 aa5.86□□□□□ -1.47
SMARCA1-205ENST00000617310 KRTAP13-2Q52LG2 175 aa5.86□□□□□ -1.47
SMARCA1-205ENST00000617310 CAMK2N1Q7Z7J9 78 aa5.85□□□□□ -1.47
SMARCA1-205ENST00000617310 DNAH10Q8IVF4 4471 aa5.83□□□□□ -1.48
SMARCA1-205ENST00000617310 S4R3F8 94 aa5.82□□□□□ -1.48
SMARCA1-205ENST00000617310 A0A1B0GU33 70 aa5.8□□□□□ -1.48
SMARCA1-205ENST00000617310 FBN3Q75N90 2809 aa5.8□□□□□ -1.48
SMARCA1-205ENST00000617310 CRIPTQ9P021 101 aa5.79□□□□□ -1.48
SMARCA1-205ENST00000617310 FRAS1Q86XX4 4008 aa5.79□□□□□ -1.48
SMARCA1-205ENST00000617310 FP248Q71RG6 208 aaPredicted RBP5.79□□□□□ -1.48
SMARCA1-205ENST00000617310 DYNC2H1Q8NCM8 4307 aaKnown RBP5.78□□□□□ -1.48
SMARCA1-205ENST00000617310 KRTAP13-1Q8IUC0 172 aa5.77□□□□□ -1.49
SMARCA1-205ENST00000617310 R4GN34 69 aa5.77□□□□□ -1.49
SMARCA1-205ENST00000617310 DNAH9Q9NYC9 4486 aa5.76□□□□□ -1.49
SMARCA1-205ENST00000617310 OXTP01178 125 aa5.76□□□□□ -1.49
SMARCA1-205ENST00000617310 KRTAP29-1A8MX34 341 aaPredicted RBP5.73□□□□□ -1.49
SMARCA1-205ENST00000617310 CDC42SE1Q9NRR8 79 aa5.72□□□□□ -1.49
SMARCA1-205ENST00000617310 M0QZ58 72 aa5.67□□□□□ -1.5
SMARCA1-205ENST00000617310 KMT2AQ03164 3969 aa5.65□□□□□ -1.5
SMARCA1-205ENST00000617310 DMAC1Q96GE9 116 aa5.63□□□□□ -1.51
SMARCA1-205ENST00000617310 Q1T7F1 81 aa5.63□□□□□ -1.51
SMARCA1-205ENST00000617310 KRTAP1-4P0C5Y4 121 aa5.63□□□□□ -1.51
SMARCA1-205ENST00000617310 LINC01558Q9Y6Z2 57 aa5.62□□□□□ -1.51
SMARCA1-205ENST00000617310 ASB16-AS1Q495Z4 193 aa5.62□□□□□ -1.51
SMARCA1-205ENST00000617310 ADM2Q7Z4H4 148 aa5.62□□□□□ -1.51
SMARCA1-205ENST00000617310 LCA10Q71F78 164 aa5.6□□□□□ -1.51
SMARCA1-205ENST00000617310 RPS29P62273 56 aaKnown RBP5.6□□□□□ -1.51
SMARCA1-205ENST00000617310 SPATA8Q6RVD6 105 aa5.6□□□□□ -1.51
SMARCA1-205ENST00000617310 PRKDCP78527 4128 aaKnown RBP5.6□□□□□ -1.51
SMARCA1-205ENST00000617310 MEGF8Q7Z7M0 2845 aa5.59□□□□□ -1.51
SMARCA1-205ENST00000617310 RPL37P61927 97 aaKnown RBP5.58□□□□□ -1.52
SMARCA1-205ENST00000617310 C20orf166-AS1Q96NR2 134 aa5.58□□□□□ -1.52
SMARCA1-205ENST00000617310 Q75L30 129 aa5.58□□□□□ -1.52
SMARCA1-205ENST00000617310 HUWE1Q7Z6Z7 4374 aaKnown RBP5.57□□□□□ -1.52
SMARCA1-205ENST00000617310 Q5VV11 94 aa5.56□□□□□ -1.52
SMARCA1-205ENST00000617310 Q5XG85 94 aa5.55□□□□□ -1.52
SMARCA1-205ENST00000617310 H1FX-AS1Q4G0G2 97 aa5.55□□□□□ -1.52
SMARCA1-205ENST00000617310 PRAC1Q96KF2 57 aa5.53□□□□□ -1.52
SMARCA1-205ENST00000617310 KTN1-AS1Q86SY8 53 aa5.51□□□□□ -1.53
SMARCA1-205ENST00000617310 HECTD4Q9Y4D8 3996 aa5.51□□□□□ -1.53
SMARCA1-205ENST00000617310 DNAH6Q9C0G6 4158 aa5.5□□□□□ -1.53
SMARCA1-205ENST00000617310 XP32Q5T750 250 aa5.49□□□□□ -1.53
SMARCA1-205ENST00000617310 A8MUU9 505 aa5.48□□□□□ -1.53
SMARCA1-205ENST00000617310 PLAC4Q8WY50 150 aa5.47□□□□□ -1.53
SMARCA1-205ENST00000617310 A0A1B0GVY2 172 aa5.46□□□□□ -1.54
SMARCA1-205ENST00000617310 VPS13DQ5THJ4 4388 aa5.46□□□□□ -1.54
SMARCA1-205ENST00000617310 A8MU10 97 aa5.46□□□□□ -1.54
SMARCA1-205ENST00000617310 DNHD1Q96M86 4753 aa5.45□□□□□ -1.54
SMARCA1-205ENST00000617310 FAT2Q9NYQ8 4349 aa5.44□□□□□ -1.54
SMARCA1-205ENST00000617310 LUZP6Q538Z0 58 aa5.38□□□□□ -1.55
SMARCA1-205ENST00000617310 STARD9Q9P2P6 4700 aa5.37□□□□□ -1.55
SMARCA1-205ENST00000617310 PLECQ15149 4684 aaKnown RBP5.37□□□□□ -1.55
SMARCA1-205ENST00000617310 DNAH17Q9UFH2 4485 aa5.36□□□□□ -1.55
SMARCA1-205ENST00000617310 ALMS1Q8TCU4 4167 aa5.36□□□□□ -1.55
SMARCA1-205ENST00000617310 TPRXLQ17RH7 258 aa5.35□□□□□ -1.55
SMARCA1-205ENST00000617310 DNAH2Q9P225 4427 aa5.34□□□□□ -1.55
SMARCA1-205ENST00000617310 ROMO1P60602 79 aa5.34□□□□□ -1.56
SMARCA1-205ENST00000617310 DNAH8Q96JB1 4490 aa5.34□□□□□ -1.56
SMARCA1-205ENST00000617310 KRTAP10-8P60410 259 aa5.33□□□□□ -1.56
SMARCA1-205ENST00000617310 KRTAP13-3Q3SY46 172 aa5.33□□□□□ -1.56
SMARCA1-205ENST00000617310 KRTAP16-1A8MUX0 517 aa5.28□□□□□ -1.56
SMARCA1-205ENST00000617310 PKD1P98161 4303 aa5.27□□□□□ -1.57
SMARCA1-205ENST00000617310 KRTAP10-10P60014 251 aa5.26□□□□□ -1.57
SMARCA1-205ENST00000617310 DNAH11Q96DT5 4516 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms