RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 LINC00483Q53H64 154 aa8.29□□□□□ -1.08
CPSF1-212ENST00000616140 HRNRQ86YZ3 2850 aaPredicted RBP8.27□□□□□ -1.08
CPSF1-212ENST00000616140 Q6ZR54 194 aa8.26□□□□□ -1.09
CPSF1-212ENST00000616140 DMAC1Q96GE9 116 aa8.25□□□□□ -1.09
CPSF1-212ENST00000616140 KRTAP11-1Q8IUC1 163 aa8.24□□□□□ -1.09
CPSF1-212ENST00000616140 CSAG1Q6PB30 78 aa8.24□□□□□ -1.09
CPSF1-212ENST00000616140 CAMK2N1Q7Z7J9 78 aa8.24□□□□□ -1.09
CPSF1-212ENST00000616140 A0A087X002 238 aa8.23□□□□□ -1.09
CPSF1-212ENST00000616140 NOTCH2NLQ7Z3S9 236 aa8.23□□□□□ -1.09
CPSF1-212ENST00000616140 KRTAP7-1Q8IUC3 87 aa8.21□□□□□ -1.09
CPSF1-212ENST00000616140 DMDP11532 3685 aa8.21□□□□□ -1.1
CPSF1-212ENST00000616140 LAMA5O15230 3695 aa8.19□□□□□ -1.1
CPSF1-212ENST00000616140 S4R3F8 94 aa8.18□□□□□ -1.1
CPSF1-212ENST00000616140 MXRA5Q9NR99 2828 aa8.17□□□□□ -1.1
CPSF1-212ENST00000616140 ZFHX4Q86UP3 3567 aa8.17□□□□□ -1.1
CPSF1-212ENST00000616140 LUZP6Q538Z0 58 aa8.16□□□□□ -1.1
CPSF1-212ENST00000616140 A0A0A0MQY5 61 aa8.16□□□□□ -1.1
CPSF1-212ENST00000616140 TENM1Q9UKZ4 2725 aa8.14□□□□□ -1.11
CPSF1-212ENST00000616140 RELNP78509 3460 aa8.14□□□□□ -1.11
CPSF1-212ENST00000616140 Q6ZRN7 208 aaPredicted RBP8.12□□□□□ -1.11
CPSF1-212ENST00000616140 Q5VSD8 79 aa8.11□□□□□ -1.11
CPSF1-212ENST00000616140 R4GN34 69 aa8.11□□□□□ -1.11
CPSF1-212ENST00000616140 LCE6AA0A183 80 aa8.1□□□□□ -1.11
CPSF1-212ENST00000616140 RPL37P61927 97 aaKnown RBP8.09□□□□□ -1.11
CPSF1-212ENST00000616140 PKD1L1Q8TDX9 2849 aa8.07□□□□□ -1.12
CPSF1-212ENST00000616140 M0R2T5 61 aa8.07□□□□□ -1.12
CPSF1-212ENST00000616140 CELSR1Q9NYQ6 3014 aa8.05□□□□□ -1.12
CPSF1-212ENST00000616140 H1FX-AS1Q4G0G2 97 aa8.05□□□□□ -1.12
CPSF1-212ENST00000616140 SPATA8Q6RVD6 105 aa8.03□□□□□ -1.12
CPSF1-212ENST00000616140 KRTAP13-1Q8IUC0 172 aa8.02□□□□□ -1.13
CPSF1-212ENST00000616140 ASB16-AS1Q495Z4 193 aa8.01□□□□□ -1.13
CPSF1-212ENST00000616140 SEC61BP60468 96 aaKnown RBP8□□□□□ -1.13
CPSF1-212ENST00000616140 KRTAP21-3Q3LHN1 58 aa7.99□□□□□ -1.13
CPSF1-212ENST00000616140 ROMO1P60602 79 aa7.98□□□□□ -1.13
CPSF1-212ENST00000616140 KRTAP13-2Q52LG2 175 aa7.97□□□□□ -1.13
CPSF1-212ENST00000616140 M0QZ58 72 aa7.95□□□□□ -1.14
CPSF1-212ENST00000616140 PDZD2O15018 2839 aa7.94□□□□□ -1.14
CPSF1-212ENST00000616140 A8MU10 97 aa7.94□□□□□ -1.14
CPSF1-212ENST00000616140 VWFP04275 2813 aa7.91□□□□□ -1.14
CPSF1-212ENST00000616140 TENM2Q9NT68 2774 aa7.9□□□□□ -1.14
CPSF1-212ENST00000616140 ADM2Q7Z4H4 148 aa7.89□□□□□ -1.15
CPSF1-212ENST00000616140 A6NN06 94 aa7.88□□□□□ -1.15
CPSF1-212ENST00000616140 SMG1Q96Q15 3661 aaKnown RBP7.86□□□□□ -1.15
CPSF1-212ENST00000616140 FBN1P35555 2871 aaKnown RBP7.86□□□□□ -1.15
CPSF1-212ENST00000616140 RPS29P62273 56 aaKnown RBP7.86□□□□□ -1.15
CPSF1-212ENST00000616140 TGP01266 2768 aa7.85□□□□□ -1.15
CPSF1-212ENST00000616140 CSMD1Q96PZ7 3565 aa7.83□□□□□ -1.16
CPSF1-212ENST00000616140 SRRM2Q9UQ35 2752 aaKnown RBP7.82□□□□□ -1.16
CPSF1-212ENST00000616140 CUBNO60494 3623 aa7.8□□□□□ -1.16
CPSF1-212ENST00000616140 SVEP1Q4LDE5 3571 aa7.77□□□□□ -1.17
CPSF1-212ENST00000616140 KRTAP25-1Q3LHN0 102 aa7.71□□□□□ -1.18
CPSF1-212ENST00000616140 A8MUU9 505 aa7.68□□□□□ -1.18
CPSF1-212ENST00000616140 C20orf166-AS1Q96NR2 134 aa7.62□□□□□ -1.19
CPSF1-212ENST00000616140 KRTAP1-4P0C5Y4 121 aa7.61□□□□□ -1.19
CPSF1-212ENST00000616140 PLAC4Q8WY50 150 aa7.6□□□□□ -1.19
CPSF1-212ENST00000616140 OTOGQ6ZRI0 2925 aa7.58□□□□□ -1.2
CPSF1-212ENST00000616140 SPENQ96T58 3664 aaKnown RBP7.57□□□□□ -1.2
CPSF1-212ENST00000616140 NDUFAF8A1L188 74 aa7.48□□□□□ -1.21
CPSF1-212ENST00000616140 ZFHX3Q15911 3703 aa7.44□□□□□ -1.22
CPSF1-212ENST00000616140 FBN3Q75N90 2809 aa7.43□□□□□ -1.22
CPSF1-212ENST00000616140 KRTAP16-1A8MUX0 517 aa7.43□□□□□ -1.22
CPSF1-212ENST00000616140 XP32Q5T750 250 aa7.42□□□□□ -1.22
CPSF1-212ENST00000616140 CSMD2Q7Z408 3487 aa7.41□□□□□ -1.22
CPSF1-212ENST00000616140 H0YAA0 97 aa7.41□□□□□ -1.22
CPSF1-212ENST00000616140 C10orf95Q9H7T3 257 aa7.36□□□□□ -1.23
CPSF1-212ENST00000616140 COL7A1Q02388 2944 aa7.35□□□□□ -1.23
CPSF1-212ENST00000616140 TNP1P09430 55 aa7.34□□□□□ -1.23
CPSF1-212ENST00000616140 NBPF19A0A087WUL8 3843 aa7.3□□□□□ -1.24
CPSF1-212ENST00000616140 MEGF8Q7Z7M0 2845 aa7.27□□□□□ -1.25
CPSF1-212ENST00000616140 KRTAP13-3Q3SY46 172 aa7.27□□□□□ -1.25
CPSF1-212ENST00000616140 P0C880 135 aa7.24□□□□□ -1.25
CPSF1-212ENST00000616140 TPRXLQ17RH7 258 aa7.21□□□□□ -1.26
CPSF1-212ENST00000616140 A0A1B0GVY2 172 aa7.18□□□□□ -1.26
CPSF1-212ENST00000616140 BSNQ9UPA5 3926 aa7.16□□□□□ -1.26
CPSF1-212ENST00000616140 PP632Q6XCG6 107 aa7.15□□□□□ -1.26
CPSF1-212ENST00000616140 KRTAP10-8P60410 259 aa7.15□□□□□ -1.27
CPSF1-212ENST00000616140 TRRAPQ9Y4A5 3859 aa7.04□□□□□ -1.28
CPSF1-212ENST00000616140 VPS13CQ709C8 3753 aa7.03□□□□□ -1.28
CPSF1-212ENST00000616140 KRTAP10-10P60014 251 aa6.97□□□□□ -1.29
CPSF1-212ENST00000616140 KRTAP3-1Q9BYR8 98 aa6.93□□□□□ -1.3
CPSF1-212ENST00000616140 KRTAP12-2P59991 146 aa6.92□□□□□ -1.3
CPSF1-212ENST00000616140 KRTAP12-1P59990 96 aa6.83□□□□□ -1.32
CPSF1-212ENST00000616140 ANK3Q12955 4377 aaKnown RBP6.78□□□□□ -1.32
CPSF1-212ENST00000616140 PRO2289Q9P1D8 64 aa6.75□□□□□ -1.33
CPSF1-212ENST00000616140 KRTAP13-4Q3LI77 160 aa6.73□□□□□ -1.33
CPSF1-212ENST00000616140 KRTAP10-6P60371 365 aaPredicted RBP6.73□□□□□ -1.33
CPSF1-212ENST00000616140 ZNF469Q96JG9 3925 aaPredicted RBP6.73□□□□□ -1.33
CPSF1-212ENST00000616140 CSMD3Q7Z407 3707 aa6.57□□□□□ -1.36
CPSF1-212ENST00000616140 MT1HL1P0DM35 61 aa6.53□□□□□ -1.36
CPSF1-212ENST00000616140 KRTAP3-2Q9BYR7 98 aa6.5□□□□□ -1.37
CPSF1-212ENST00000616140 KRTAP3-3Q9BYR6 98 aa6.49□□□□□ -1.37
CPSF1-212ENST00000616140 AKAP9Q99996 3911 aa6.49□□□□□ -1.37
CPSF1-212ENST00000616140 KRTAP10-4P60372 401 aaPredicted RBP6.43□□□□□ -1.38
CPSF1-212ENST00000616140 HUWE1Q7Z6Z7 4374 aaKnown RBP6.35□□□□□ -1.39
CPSF1-212ENST00000616140 KRTAP15-1Q3LI76 137 aa6.33□□□□□ -1.4
CPSF1-212ENST00000616140 KRTAP4-5Q9BYR2 181 aa6.29□□□□□ -1.4
CPSF1-212ENST00000616140 KRTAP23-1A1A580 65 aa6.28□□□□□ -1.4
CPSF1-212ENST00000616140 DNAH5Q8TE73 4624 aa6.18□□□□□ -1.42
CPSF1-212ENST00000616140 ALMS1Q8TCU4 4167 aa6.13□□□□□ -1.43
CPSF1-212ENST00000616140 DNAH10Q8IVF4 4471 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms