RNA–Protein interactions for RNA: ENST00000611869.4

TCF3-220, Transcript of transcription factor 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCF3, Length 4,409 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF3-220ENST00000611869 Q5XG85 94 aa7.81□□□□□ -1.16
TCF3-220ENST00000611869 KRTAP29-1A8MX34 341 aaPredicted RBP7.78□□□□□ -1.16
TCF3-220ENST00000611869 HRES1P13985 223 aa7.78□□□□□ -1.16
TCF3-220ENST00000611869 VPS13CQ709C8 3753 aa7.77□□□□□ -1.16
TCF3-220ENST00000611869 TGP01266 2768 aa7.77□□□□□ -1.17
TCF3-220ENST00000611869 A0A087X002 238 aa7.77□□□□□ -1.17
TCF3-220ENST00000611869 TENM2Q9NT68 2774 aa7.77□□□□□ -1.17
TCF3-220ENST00000611869 TRRAPQ9Y4A5 3859 aa7.76□□□□□ -1.17
TCF3-220ENST00000611869 Q1T7F1 81 aa7.75□□□□□ -1.17
TCF3-220ENST00000611869 ANK3Q12955 4377 aaKnown RBP7.74□□□□□ -1.17
TCF3-220ENST00000611869 KRTAP13-1Q8IUC0 172 aa7.74□□□□□ -1.17
TCF3-220ENST00000611869 NOTCH2NLQ7Z3S9 236 aa7.73□□□□□ -1.17
TCF3-220ENST00000611869 UQCR11O14957 56 aa7.72□□□□□ -1.17
TCF3-220ENST00000611869 Q5W150 140 aa7.72□□□□□ -1.17
TCF3-220ENST00000611869 LCE6AA0A183 80 aa7.71□□□□□ -1.17
TCF3-220ENST00000611869 ZCCHC13Q8WW36 166 aaKnown RBP7.69□□□□□ -1.18
TCF3-220ENST00000611869 FLG2Q5D862 2391 aaPredicted RBP7.68□□□□□ -1.18
TCF3-220ENST00000611869 J3QL48 77 aa7.66□□□□□ -1.18
TCF3-220ENST00000611869 MIR22HGQ0VDD5 57 aa7.66□□□□□ -1.18
TCF3-220ENST00000611869 KRTAP13-2Q52LG2 175 aa7.6□□□□□ -1.19
TCF3-220ENST00000611869 ZNF469Q96JG9 3925 aaPredicted RBP7.59□□□□□ -1.19
TCF3-220ENST00000611869 CDC42SE1Q9NRR8 79 aa7.59□□□□□ -1.19
TCF3-220ENST00000611869 LINC01558Q9Y6Z2 57 aa7.58□□□□□ -1.2
TCF3-220ENST00000611869 Q5VV11 94 aa7.58□□□□□ -1.2
TCF3-220ENST00000611869 Q75L30 129 aa7.56□□□□□ -1.2
TCF3-220ENST00000611869 Q5VSD8 79 aa7.56□□□□□ -1.2
TCF3-220ENST00000611869 SPINK7P58062 85 aa7.54□□□□□ -1.2
TCF3-220ENST00000611869 ASB16-AS1Q495Z4 193 aa7.51□□□□□ -1.21
TCF3-220ENST00000611869 DMAC1Q96GE9 116 aa7.49□□□□□ -1.21
TCF3-220ENST00000611869 KTN1-AS1Q86SY8 53 aa7.48□□□□□ -1.21
TCF3-220ENST00000611869 RBM12B-AS1Q9P1G2 102 aa7.47□□□□□ -1.21
TCF3-220ENST00000611869 COX6B2Q6YFQ2 88 aa7.46□□□□□ -1.21
TCF3-220ENST00000611869 A0A0D9SG42 100 aa7.46□□□□□ -1.22
TCF3-220ENST00000611869 Q6ZSA8 131 aa7.46□□□□□ -1.22
TCF3-220ENST00000611869 KRTAP21-3Q3LHN1 58 aa7.45□□□□□ -1.22
TCF3-220ENST00000611869 A0A1B0GU33 70 aa7.42□□□□□ -1.22
TCF3-220ENST00000611869 FBN3Q75N90 2809 aa7.41□□□□□ -1.22
TCF3-220ENST00000611869 SRRM2Q9UQ35 2752 aaKnown RBP7.38□□□□□ -1.23
TCF3-220ENST00000611869 KRTAP1-4P0C5Y4 121 aa7.37□□□□□ -1.23
TCF3-220ENST00000611869 LINC01554Q52M75 96 aa7.36□□□□□ -1.23
TCF3-220ENST00000611869 LCA10Q71F78 164 aa7.36□□□□□ -1.23
TCF3-220ENST00000611869 RPS29P62273 56 aaKnown RBP7.34□□□□□ -1.23
TCF3-220ENST00000611869 SPINT4Q6UDR6 99 aa7.34□□□□□ -1.24
TCF3-220ENST00000611869 S4R3F8 94 aa7.3□□□□□ -1.24
TCF3-220ENST00000611869 MEGF8Q7Z7M0 2845 aa7.3□□□□□ -1.24
TCF3-220ENST00000611869 A8MU10 97 aa7.27□□□□□ -1.25
TCF3-220ENST00000611869 PRAC1Q96KF2 57 aa7.27□□□□□ -1.25
TCF3-220ENST00000611869 AKAP9Q99996 3911 aa7.27□□□□□ -1.25
TCF3-220ENST00000611869 CSAG1Q6PB30 78 aa7.25□□□□□ -1.25
TCF3-220ENST00000611869 CRIPTQ9P021 101 aa7.22□□□□□ -1.25
TCF3-220ENST00000611869 COL7A1Q02388 2944 aa7.19□□□□□ -1.26
TCF3-220ENST00000611869 SPATA8Q6RVD6 105 aa7.18□□□□□ -1.26
TCF3-220ENST00000611869 A8MUU9 505 aa7.17□□□□□ -1.26
TCF3-220ENST00000611869 SEC61BP60468 96 aaKnown RBP7.17□□□□□ -1.26
TCF3-220ENST00000611869 H1FX-AS1Q4G0G2 97 aa7.17□□□□□ -1.26
TCF3-220ENST00000611869 C20orf166-AS1Q96NR2 134 aa7.15□□□□□ -1.27
TCF3-220ENST00000611869 KRTAP16-1A8MUX0 517 aa7.13□□□□□ -1.27
TCF3-220ENST00000611869 HUWE1Q7Z6Z7 4374 aaKnown RBP7.12□□□□□ -1.27
TCF3-220ENST00000611869 CSMD3Q7Z407 3707 aa7.11□□□□□ -1.27
TCF3-220ENST00000611869 RPL37P61927 97 aaKnown RBP7.11□□□□□ -1.27
TCF3-220ENST00000611869 H3BS24 57 aa7.1□□□□□ -1.27
TCF3-220ENST00000611869 R4GN34 69 aa7.07□□□□□ -1.28
TCF3-220ENST00000611869 ADM2Q7Z4H4 148 aa7.06□□□□□ -1.28
TCF3-220ENST00000611869 A6NN06 94 aa7.04□□□□□ -1.28
TCF3-220ENST00000611869 M0R2T5 61 aa7.03□□□□□ -1.28
TCF3-220ENST00000611869 CAMK2N1Q7Z7J9 78 aa7.03□□□□□ -1.28
TCF3-220ENST00000611869 A0A1B0GVY2 172 aa7.02□□□□□ -1.28
TCF3-220ENST00000611869 KRTAP13-3Q3SY46 172 aa7.02□□□□□ -1.29
TCF3-220ENST00000611869 M0QZ58 72 aa7□□□□□ -1.29
TCF3-220ENST00000611869 XP32Q5T750 250 aa6.99□□□□□ -1.29
TCF3-220ENST00000611869 ROMO1P60602 79 aa6.94□□□□□ -1.3
TCF3-220ENST00000611869 DNAH9Q9NYC9 4486 aa6.9□□□□□ -1.3
TCF3-220ENST00000611869 KRTAP10-8P60410 259 aa6.87□□□□□ -1.31
TCF3-220ENST00000611869 PLECQ15149 4684 aaKnown RBP6.82□□□□□ -1.32
TCF3-220ENST00000611869 H0YAA0 97 aa6.79□□□□□ -1.32
TCF3-220ENST00000611869 TPRXLQ17RH7 258 aa6.78□□□□□ -1.32
TCF3-220ENST00000611869 DNHD1Q96M86 4753 aa6.77□□□□□ -1.33
TCF3-220ENST00000611869 DNAH10Q8IVF4 4471 aa6.76□□□□□ -1.33
TCF3-220ENST00000611869 KRTAP25-1Q3LHN0 102 aa6.73□□□□□ -1.33
TCF3-220ENST00000611869 P0C880 135 aa6.69□□□□□ -1.34
TCF3-220ENST00000611869 DNAH1Q9P2D7 4330 aa6.69□□□□□ -1.34
TCF3-220ENST00000611869 KRTAP3-1Q9BYR8 98 aa6.68□□□□□ -1.34
TCF3-220ENST00000611869 DNAH11Q96DT5 4516 aa6.66□□□□□ -1.34
TCF3-220ENST00000611869 LUZP6Q538Z0 58 aa6.65□□□□□ -1.34
TCF3-220ENST00000611869 STARD9Q9P2P6 4700 aa6.64□□□□□ -1.35
TCF3-220ENST00000611869 KRTAP10-4P60372 401 aaPredicted RBP6.61□□□□□ -1.35
TCF3-220ENST00000611869 DNAH5Q8TE73 4624 aa6.6□□□□□ -1.35
TCF3-220ENST00000611869 PLAC4Q8WY50 150 aa6.59□□□□□ -1.36
TCF3-220ENST00000611869 PRKDCP78527 4128 aaKnown RBP6.58□□□□□ -1.36
TCF3-220ENST00000611869 VPS13DQ5THJ4 4388 aa6.58□□□□□ -1.36
TCF3-220ENST00000611869 ANK2Q01484 3957 aa6.57□□□□□ -1.36
TCF3-220ENST00000611869 A0A0A0MQY5 61 aa6.57□□□□□ -1.36
TCF3-220ENST00000611869 C10orf95Q9H7T3 257 aa6.56□□□□□ -1.36
TCF3-220ENST00000611869 MT1HL1P0DM35 61 aa6.52□□□□□ -1.37
TCF3-220ENST00000611869 DNAH17Q9UFH2 4485 aa6.5□□□□□ -1.37
TCF3-220ENST00000611869 FAT1Q14517 4588 aa6.45□□□□□ -1.38
TCF3-220ENST00000611869 KMT2AQ03164 3969 aa6.44□□□□□ -1.38
TCF3-220ENST00000611869 ALMS1Q8TCU4 4167 aa6.44□□□□□ -1.38
TCF3-220ENST00000611869 NDUFAF8A1L188 74 aa6.42□□□□□ -1.38
TCF3-220ENST00000611869 LRP1BQ9NZR2 4599 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms