RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 FRAS1Q86XX4 4008 aa6.03□□□□□ -1.44
VPS53-220ENST00000576149 LCE2BO14633 110 aa6.03□□□□□ -1.44
VPS53-220ENST00000576149 IGLV7-43P04211 117 aa6.02□□□□□ -1.45
VPS53-220ENST00000576149 SEC61BP60468 96 aaKnown RBP6.02□□□□□ -1.45
VPS53-220ENST00000576149 PSPHP1O15172 72 aa6.01□□□□□ -1.45
VPS53-220ENST00000576149 FBN3Q75N90 2809 aa6.01□□□□□ -1.45
VPS53-220ENST00000576149 LINC00208Q96KT6 92 aa6.01□□□□□ -1.45
VPS53-220ENST00000576149 hDV103S1A0JD37 113 aa6□□□□□ -1.45
VPS53-220ENST00000576149 H0Y9P7 68 aa6□□□□□ -1.45
VPS53-220ENST00000576149 TRAV22A0A0B4J277 110 aa6□□□□□ -1.45
VPS53-220ENST00000576149 H3BPC8 53 aa6□□□□□ -1.45
VPS53-220ENST00000576149 ASB16-AS1Q495Z4 193 aa6□□□□□ -1.45
VPS53-220ENST00000576149 FAM229BQ4G0N7 80 aa6□□□□□ -1.45
VPS53-220ENST00000576149 DNAH6Q9C0G6 4158 aa6□□□□□ -1.45
VPS53-220ENST00000576149 KRTAP10-2P60368 255 aa5.99□□□□□ -1.45
VPS53-220ENST00000576149 A6NN06 94 aa5.98□□□□□ -1.45
VPS53-220ENST00000576149 CIRBP-AS1Q8TBR5 109 aa5.98□□□□□ -1.45
VPS53-220ENST00000576149 TGP01266 2768 aa5.98□□□□□ -1.45
VPS53-220ENST00000576149 CYP4F30PQ9H0H9 118 aa5.98□□□□□ -1.45
VPS53-220ENST00000576149 C8orf17Q9NRJ1 99 aa5.98□□□□□ -1.45
VPS53-220ENST00000576149 DNAH5Q8TE73 4624 aa5.97□□□□□ -1.45
VPS53-220ENST00000576149 A0A1B0GVX0 72 aa5.97□□□□□ -1.45
VPS53-220ENST00000576149 C1orf64Q8NEQ6 169 aa5.97□□□□□ -1.45
VPS53-220ENST00000576149 DNAH11Q96DT5 4516 aa5.97□□□□□ -1.45
VPS53-220ENST00000576149 CDK2AP2O75956 126 aa5.96□□□□□ -1.46
VPS53-220ENST00000576149 ALMS1Q8TCU4 4167 aa5.96□□□□□ -1.46
VPS53-220ENST00000576149 TP53AIP1Q9HCN2 124 aa5.95□□□□□ -1.46
VPS53-220ENST00000576149 PRR4Q16378 134 aa5.94□□□□□ -1.46
VPS53-220ENST00000576149 Q6ZSA8 131 aa5.94□□□□□ -1.46
VPS53-220ENST00000576149 SPANXA2-OT1Q8N9U9 137 aa5.94□□□□□ -1.46
VPS53-220ENST00000576149 LCE2CQ5TA81 110 aa5.93□□□□□ -1.46
VPS53-220ENST00000576149 SSBP3-AS1Q7Z2R9 100 aa5.93□□□□□ -1.46
VPS53-220ENST00000576149 KRTAP10-1P60331 282 aa5.91□□□□□ -1.46
VPS53-220ENST00000576149 A0A087X002 238 aa5.91□□□□□ -1.46
VPS53-220ENST00000576149 NOTCH2NLQ7Z3S9 236 aa5.91□□□□□ -1.46
VPS53-220ENST00000576149 MRPL34Q9BQ48 92 aaKnown RBP5.91□□□□□ -1.46
VPS53-220ENST00000576149 FAT2Q9NYQ8 4349 aa5.9□□□□□ -1.46
VPS53-220ENST00000576149 ATP11AUNQ6ZP68 121 aa5.9□□□□□ -1.47
VPS53-220ENST00000576149 PKD1P98161 4303 aa5.89□□□□□ -1.47
VPS53-220ENST00000576149 Q1T7F1 81 aa5.89□□□□□ -1.47
VPS53-220ENST00000576149 SPINK6Q6UWN8 80 aa5.89□□□□□ -1.47
VPS53-220ENST00000576149 A8MU10 97 aa5.88□□□□□ -1.47
VPS53-220ENST00000576149 KRTAP21-3Q3LHN1 58 aa5.88□□□□□ -1.47
VPS53-220ENST00000576149 LRP1BQ9NZR2 4599 aa5.88□□□□□ -1.47
VPS53-220ENST00000576149 HYDINQ4G0P3 5121 aa5.87□□□□□ -1.47
VPS53-220ENST00000576149 KRTAP13-2Q52LG2 175 aa5.86□□□□□ -1.47
VPS53-220ENST00000576149 IGLV7-46A0A075B6I9 117 aa5.86□□□□□ -1.47
VPS53-220ENST00000576149 LCE2AQ5TA79 106 aaPredicted RBP5.85□□□□□ -1.47
VPS53-220ENST00000576149 PCOTHQ58A44 107 aa5.84□□□□□ -1.48
VPS53-220ENST00000576149 KRTAP1-4P0C5Y4 121 aa5.83□□□□□ -1.48
VPS53-220ENST00000576149 SPTSSBQ8NFR3 76 aa5.82□□□□□ -1.48
VPS53-220ENST00000576149 KRTAP13-3Q3SY46 172 aa5.81□□□□□ -1.48
VPS53-220ENST00000576149 Q5W150 140 aa5.8□□□□□ -1.48
VPS53-220ENST00000576149 LOC101927531A0A1B0GV80 90 aa5.79□□□□□ -1.48
VPS53-220ENST00000576149 ADM2Q7Z4H4 148 aa5.79□□□□□ -1.48
VPS53-220ENST00000576149 COA5Q86WW8 74 aa5.79□□□□□ -1.48
VPS53-220ENST00000576149 Q8N9P0 234 aaPredicted RBP5.78□□□□□ -1.48
VPS53-220ENST00000576149 VPS13BQ7Z7G8 4022 aa5.78□□□□□ -1.48
VPS53-220ENST00000576149 LIMD2Q9BT23 127 aa5.76□□□□□ -1.49
VPS53-220ENST00000576149 RETNLBQ9BQ08 111 aa5.75□□□□□ -1.49
VPS53-220ENST00000576149 SACSQ9NZJ4 4579 aa5.74□□□□□ -1.49
VPS53-220ENST00000576149 TYMSOSQ8TAI1 123 aa5.74□□□□□ -1.49
VPS53-220ENST00000576149 PRAC1Q96KF2 57 aa5.74□□□□□ -1.49
VPS53-220ENST00000576149 KRTAP16-1A8MUX0 517 aa5.73□□□□□ -1.49
VPS53-220ENST00000576149 HRES1P13985 223 aa5.72□□□□□ -1.49
VPS53-220ENST00000576149 SPINK1P00995 79 aa5.72□□□□□ -1.49
VPS53-220ENST00000576149 Q5VV11 94 aa5.71□□□□□ -1.5
VPS53-220ENST00000576149 PKHD1P08F94 4074 aa5.7□□□□□ -1.5
VPS53-220ENST00000576149 PRR15LQ9BU68 103 aa5.68□□□□□ -1.5
VPS53-220ENST00000576149 IGKV2-30P06310 120 aa5.67□□□□□ -1.5
VPS53-220ENST00000576149 A0A1B0GVY2 172 aa5.67□□□□□ -1.5
VPS53-220ENST00000576149 RPS29P62273 56 aaKnown RBP5.66□□□□□ -1.5
VPS53-220ENST00000576149 DYNC1H1Q14204 4646 aaKnown RBP5.65□□□□□ -1.5
VPS53-220ENST00000576149 SMR3BP02814 79 aaPredicted RBP5.65□□□□□ -1.5
VPS53-220ENST00000576149 SPAG11AQ6PDA7 123 aa5.65□□□□□ -1.5
VPS53-220ENST00000576149 LINC00304Q8N9R0 145 aa5.65□□□□□ -1.5
VPS53-220ENST00000576149 LINC01558Q9Y6Z2 57 aa5.65□□□□□ -1.51
VPS53-220ENST00000576149 CHKB-CPT1BH3BT56 60 aa5.64□□□□□ -1.51
VPS53-220ENST00000576149 ACYP2P14621 99 aa5.64□□□□□ -1.51
VPS53-220ENST00000576149 DMAC1Q96GE9 116 aa5.64□□□□□ -1.51
VPS53-220ENST00000576149 CDC42SE1Q9NRR8 79 aa5.63□□□□□ -1.51
VPS53-220ENST00000576149 LORP23490 312 aaPredicted RBP5.63□□□□□ -1.51
VPS53-220ENST00000576149 KRTAP10-4P60372 401 aaPredicted RBP5.62□□□□□ -1.51
VPS53-220ENST00000576149 APOBP04114 4563 aaKnown RBP5.6□□□□□ -1.51
VPS53-220ENST00000576149 ROMO1P60602 79 aa5.6□□□□□ -1.51
VPS53-220ENST00000576149 IGKV2D-30A0A075B6S6 120 aa5.59□□□□□ -1.51
VPS53-220ENST00000576149 FAT1Q14517 4588 aa5.59□□□□□ -1.51
VPS53-220ENST00000576149 PKHD1L1Q86WI1 4243 aa5.57□□□□□ -1.52
VPS53-220ENST00000576149 A6NED7 52 aa5.56□□□□□ -1.52
VPS53-220ENST00000576149 RYR2Q92736 4967 aa5.53□□□□□ -1.52
VPS53-220ENST00000576149 LUZP6Q538Z0 58 aa5.53□□□□□ -1.52
VPS53-220ENST00000576149 A8MUU9 505 aa5.5□□□□□ -1.53
VPS53-220ENST00000576149 SPINK7P58062 85 aa5.5□□□□□ -1.53
VPS53-220ENST00000576149 C20orf166-AS1Q96NR2 134 aa5.5□□□□□ -1.53
VPS53-220ENST00000576149 C9orf92A6NGG3 77 aa5.5□□□□□ -1.53
VPS53-220ENST00000576149 P0C880 135 aa5.48□□□□□ -1.53
VPS53-220ENST00000576149 KMT2CQ8NEZ4 4911 aaKnown RBP5.47□□□□□ -1.53
VPS53-220ENST00000576149 A0A1B0GU69 56 aa5.45□□□□□ -1.54
VPS53-220ENST00000576149 Q8N1X5 172 aa5.45□□□□□ -1.54
VPS53-220ENST00000576149 CSAG1Q6PB30 78 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms