RNA–Protein interactions for RNA: ENST00000570023.1

VPS39-212, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 337 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-212ENST00000570023 SMG1Q96Q15 3661 aaKnown RBP1.95□□□□□ -2.1
VPS39-212ENST00000570023 AKAP13Q12802 2813 aa1.95□□□□□ -2.1
VPS39-212ENST00000570023 OTOGQ6ZRI0 2925 aa1.95□□□□□ -2.1
VPS39-212ENST00000570023 CELSR3Q9NYQ7 3312 aa1.95□□□□□ -2.1
VPS39-212ENST00000570023 RP1L1Q8IWN7 2480 aaPredicted RBP1.95□□□□□ -2.1
VPS39-212ENST00000570023 CSMD1Q96PZ7 3565 aa1.94□□□□□ -2.1
VPS39-212ENST00000570023 BSNQ9UPA5 3926 aa1.93□□□□□ -2.1
VPS39-212ENST00000570023 MAP1AP78559 2803 aaPredicted RBP1.93□□□□□ -2.1
VPS39-212ENST00000570023 CELSR2Q9HCU4 2923 aa1.93□□□□□ -2.1
VPS39-212ENST00000570023 HIVEP2P31629 2446 aa1.92□□□□□ -2.1
VPS39-212ENST00000570023 ASH1LQ9NR48 2969 aaKnown RBP1.92□□□□□ -2.1
VPS39-212ENST00000570023 CREBBPQ92793 2442 aa1.91□□□□□ -2.1
VPS39-212ENST00000570023 DCHS2Q6V1P9 2916 aa1.91□□□□□ -2.1
VPS39-212ENST00000570023 ITPR1Q14643 2758 aa1.91□□□□□ -2.1
VPS39-212ENST00000570023 ABCA2Q9BZC7 2435 aa1.9□□□□□ -2.1
VPS39-212ENST00000570023 BOD1L1Q8NFC6 3051 aa1.9□□□□□ -2.11
VPS39-212ENST00000570023 ANKHD1Q8IWZ3 2542 aaKnown RBP1.9□□□□□ -2.11
VPS39-212ENST00000570023 PIEZO2Q9H5I5 2752 aa1.9□□□□□ -2.11
VPS39-212ENST00000570023 KRTAP13-2Q52LG2 175 aa1.89□□□□□ -2.11
VPS39-212ENST00000570023 GVINP1Q7Z2Y8 2422 aa1.89□□□□□ -2.11
VPS39-212ENST00000570023 AKAP9Q99996 3911 aa1.89□□□□□ -2.11
VPS39-212ENST00000570023 ZFHX4Q86UP3 3567 aa1.88□□□□□ -2.11
VPS39-212ENST00000570023 CSPG4Q6UVK1 2322 aa1.88□□□□□ -2.11
VPS39-212ENST00000570023 HRNRQ86YZ3 2850 aaPredicted RBP1.88□□□□□ -2.11
VPS39-212ENST00000570023 LCE3DQ9BYE3 92 aa1.88□□□□□ -2.11
VPS39-212ENST00000570023 NBASA2RRP1 2371 aa1.88□□□□□ -2.11
VPS39-212ENST00000570023 TACC2O95359 2948 aa1.87□□□□□ -2.11
VPS39-212ENST00000570023 LOC400499M0QZD8 3231 aa1.87□□□□□ -2.11
VPS39-212ENST00000570023 LCE1CQ5T751 118 aa1.87□□□□□ -2.11
VPS39-212ENST00000570023 LCE1BQ5T7P3 118 aa1.87□□□□□ -2.11
VPS39-212ENST00000570023 SPG11Q96JI7 2443 aa1.86□□□□□ -2.11
VPS39-212ENST00000570023 NCOR2Q9Y618 2525 aa1.85□□□□□ -2.11
VPS39-212ENST00000570023 ASPMQ8IZT6 3477 aa1.85□□□□□ -2.11
VPS39-212ENST00000570023 DMXL1Q9Y485 3027 aa1.85□□□□□ -2.11
VPS39-212ENST00000570023 KRTAP10-1P60331 282 aa1.85□□□□□ -2.11
VPS39-212ENST00000570023 F8P00451 2351 aa1.84□□□□□ -2.12
VPS39-212ENST00000570023 LRBAP50851 2863 aa1.83□□□□□ -2.12
VPS39-212ENST00000570023 VPS13CQ709C8 3753 aa1.83□□□□□ -2.12
VPS39-212ENST00000570023 KRTAP5-2Q701N4 177 aa1.83□□□□□ -2.12
VPS39-212ENST00000570023 COL12A1Q99715 3063 aa1.83□□□□□ -2.12
VPS39-212ENST00000570023 PRRC2CQ9Y520 2896 aaKnown RBP1.83□□□□□ -2.12
VPS39-212ENST00000570023 HIVEP3Q5T1R4 2406 aa1.82□□□□□ -2.12
VPS39-212ENST00000570023 ADGRG4Q8IZF6 3080 aa1.82□□□□□ -2.12
VPS39-212ENST00000570023 OTOGLQ3ZCN5 2332 aa1.82□□□□□ -2.12
VPS39-212ENST00000570023 RELNP78509 3460 aa1.82□□□□□ -2.12
VPS39-212ENST00000570023 CELSR1Q9NYQ6 3014 aa1.82□□□□□ -2.12
VPS39-212ENST00000570023 SPTAN1Q13813 2472 aaKnown RBP1.81□□□□□ -2.12
VPS39-212ENST00000570023 SMR3AQ99954 134 aa1.81□□□□□ -2.12
VPS39-212ENST00000570023 FBN1P35555 2871 aaKnown RBP1.81□□□□□ -2.12
VPS39-212ENST00000570023 FAM208BQ5VWN6 2430 aa1.81□□□□□ -2.12
VPS39-212ENST00000570023 NBPF19A0A087WUL8 3843 aa1.81□□□□□ -2.12
VPS39-212ENST00000570023 LAMA5O15230 3695 aa1.8□□□□□ -2.12
VPS39-212ENST00000570023 FN1P02751 2386 aaKnown RBP1.8□□□□□ -2.12
VPS39-212ENST00000570023 ANK3Q12955 4377 aaKnown RBP1.8□□□□□ -2.12
VPS39-212ENST00000570023 NF1P21359 2839 aa1.8□□□□□ -2.12
VPS39-212ENST00000570023 TNP1P09430 55 aa1.8□□□□□ -2.12
VPS39-212ENST00000570023 CEP290O15078 2479 aa1.79□□□□□ -2.12
VPS39-212ENST00000570023 RIF1Q5UIP0 2472 aaKnown RBP1.79□□□□□ -2.12
VPS39-212ENST00000570023 ATMQ13315 3056 aa1.79□□□□□ -2.12
VPS39-212ENST00000570023 DNAH1Q9P2D7 4330 aa1.79□□□□□ -2.12
VPS39-212ENST00000570023 ZNF462Q96JM2 2506 aa1.79□□□□□ -2.12
VPS39-212ENST00000570023 UBR5O95071 2799 aaPredicted RBP1.78□□□□□ -2.12
VPS39-212ENST00000570023 NAV2Q8IVL1 2488 aa1.78□□□□□ -2.12
VPS39-212ENST00000570023 SVEP1Q4LDE5 3571 aa1.78□□□□□ -2.12
VPS39-212ENST00000570023 CRYBG3Q68DQ2 2970 aa1.78□□□□□ -2.12
VPS39-212ENST00000570023 VPS13DQ5THJ4 4388 aa1.77□□□□□ -2.13
VPS39-212ENST00000570023 KRTAP10-10P60014 251 aa1.77□□□□□ -2.13
VPS39-212ENST00000570023 C9orf92A6NGG3 77 aa1.76□□□□□ -2.13
VPS39-212ENST00000570023 COL6A5A8TX70 2615 aa1.76□□□□□ -2.13
VPS39-212ENST00000570023 VWFP04275 2813 aa1.76□□□□□ -2.13
VPS39-212ENST00000570023 TLN1Q9Y490 2541 aaKnown RBP1.75□□□□□ -2.13
VPS39-212ENST00000570023 SONP18583 2426 aaKnown RBP1.75□□□□□ -2.13
VPS39-212ENST00000570023 CCDC168Q8NDH2 2452 aa1.74□□□□□ -2.13
VPS39-212ENST00000570023 SETXQ7Z333 2677 aaKnown RBP1.74□□□□□ -2.13
VPS39-212ENST00000570023 APCP25054 2843 aa1.74□□□□□ -2.13
VPS39-212ENST00000570023 ANKRD11Q6UB99 2663 aaPredicted RBP1.73□□□□□ -2.13
VPS39-212ENST00000570023 TLN2Q9Y4G6 2542 aa1.73□□□□□ -2.13
VPS39-212ENST00000570023 MUC6Q6W4X9 2439 aa1.73□□□□□ -2.13
VPS39-212ENST00000570023 ANK2Q01484 3957 aa1.73□□□□□ -2.13
VPS39-212ENST00000570023 PTPN13Q12923 2485 aa1.73□□□□□ -2.13
VPS39-212ENST00000570023 BAHCC1Q9P281 2608 aa1.72□□□□□ -2.13
VPS39-212ENST00000570023 TEX15Q9BXT5 2789 aa1.72□□□□□ -2.13
VPS39-212ENST00000570023 MUC3AQ02505 3323 aa1.72□□□□□ -2.13
VPS39-212ENST00000570023 MEGF8Q7Z7M0 2845 aa1.72□□□□□ -2.13
VPS39-212ENST00000570023 NIPBLQ6KC79 2804 aaeCLIP1.71□□□□□ -2.14
VPS39-212ENST00000570023 TENM4Q6N022 2769 aa1.7□□□□□ -2.14
VPS39-212ENST00000570023 CSMD2Q7Z408 3487 aa1.7□□□□□ -2.14
VPS39-212ENST00000570023 TRRAPQ9Y4A5 3859 aa1.7□□□□□ -2.14
VPS39-212ENST00000570023 UTP20O75691 2785 aaKnown RBP1.7□□□□□ -2.14
VPS39-212ENST00000570023 SRRM2Q9UQ35 2752 aaKnown RBP1.7□□□□□ -2.14
VPS39-212ENST00000570023 MYO9AB2RTY4 2548 aa1.69□□□□□ -2.14
VPS39-212ENST00000570023 ZFYVE26Q68DK2 2539 aa1.69□□□□□ -2.14
VPS39-212ENST00000570023 USP9XQ93008 2570 aaPredicted RBP1.68□□□□□ -2.14
VPS39-212ENST00000570023 DMBT1Q9UGM3 2413 aaPredicted RBP1.68□□□□□ -2.14
VPS39-212ENST00000570023 JMJD1CQ15652 2540 aa1.68□□□□□ -2.14
VPS39-212ENST00000570023 MYCBP2O75592 4640 aa1.67□□□□□ -2.14
VPS39-212ENST00000570023 MXRA5Q9NR99 2828 aa1.67□□□□□ -2.14
VPS39-212ENST00000570023 FRAS1Q86XX4 4008 aa1.67□□□□□ -2.14
VPS39-212ENST00000570023 TGP01266 2768 aa1.67□□□□□ -2.14
VPS39-212ENST00000570023 DNAH10Q8IVF4 4471 aa1.67□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms