RNA–Protein interactions for RNA: ENST00000566612.5

CDH1-210, Transcript of cadherin 1, humanhuman

TSL 1 (best)

Gene CDH1, Length 4,138 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-210ENST00000566612 LINC00304Q8N9R0 145 aa6.92□□□□□ -1.3
CDH1-210ENST00000566612 KRTAP29-1A8MX34 341 aaPredicted RBP6.92□□□□□ -1.3
CDH1-210ENST00000566612 KRTAP10-1P60331 282 aa6.91□□□□□ -1.3
CDH1-210ENST00000566612 CSMD3Q7Z407 3707 aa6.89□□□□□ -1.31
CDH1-210ENST00000566612 IGLV7-46A0A075B6I9 117 aa6.89□□□□□ -1.31
CDH1-210ENST00000566612 CD164Q04900 197 aa6.89□□□□□ -1.31
CDH1-210ENST00000566612 A0A087X002 238 aa6.88□□□□□ -1.31
CDH1-210ENST00000566612 NOTCH2NLQ7Z3S9 236 aa6.88□□□□□ -1.31
CDH1-210ENST00000566612 Q8N9P0 234 aaPredicted RBP6.88□□□□□ -1.31
CDH1-210ENST00000566612 LINC00483Q53H64 154 aa6.88□□□□□ -1.31
CDH1-210ENST00000566612 DMBT1Q9UGM3 2413 aaPredicted RBP6.87□□□□□ -1.31
CDH1-210ENST00000566612 Q1T7F1 81 aa6.87□□□□□ -1.31
CDH1-210ENST00000566612 ZCCHC13Q8WW36 166 aaKnown RBP6.87□□□□□ -1.31
CDH1-210ENST00000566612 KRTAP13-1Q8IUC0 172 aa6.86□□□□□ -1.31
CDH1-210ENST00000566612 HRES1P13985 223 aa6.83□□□□□ -1.32
CDH1-210ENST00000566612 Q8N1X5 172 aa6.83□□□□□ -1.32
CDH1-210ENST00000566612 ATP11AUNQ6ZP68 121 aa6.79□□□□□ -1.32
CDH1-210ENST00000566612 LCE6AA0A183 80 aa6.78□□□□□ -1.32
CDH1-210ENST00000566612 COL7A1Q02388 2944 aa6.78□□□□□ -1.32
CDH1-210ENST00000566612 Q5W150 140 aa6.78□□□□□ -1.32
CDH1-210ENST00000566612 K7ERS5 55 aa6.76□□□□□ -1.33
CDH1-210ENST00000566612 FBN3Q75N90 2809 aa6.75□□□□□ -1.33
CDH1-210ENST00000566612 Q5VV11 94 aa6.75□□□□□ -1.33
CDH1-210ENST00000566612 FLG2Q5D862 2391 aaPredicted RBP6.74□□□□□ -1.33
CDH1-210ENST00000566612 UQCR11O14957 56 aa6.71□□□□□ -1.33
CDH1-210ENST00000566612 KRTAP13-2Q52LG2 175 aa6.7□□□□□ -1.34
CDH1-210ENST00000566612 MEGF8Q7Z7M0 2845 aa6.69□□□□□ -1.34
CDH1-210ENST00000566612 MIR22HGQ0VDD5 57 aa6.68□□□□□ -1.34
CDH1-210ENST00000566612 LINC01558Q9Y6Z2 57 aa6.68□□□□□ -1.34
CDH1-210ENST00000566612 Q75L30 129 aa6.68□□□□□ -1.34
CDH1-210ENST00000566612 CDC42SE1Q9NRR8 79 aa6.68□□□□□ -1.34
CDH1-210ENST00000566612 SPINK7P58062 85 aa6.66□□□□□ -1.34
CDH1-210ENST00000566612 A8MU10 97 aa6.6□□□□□ -1.35
CDH1-210ENST00000566612 DMAC1Q96GE9 116 aa6.59□□□□□ -1.35
CDH1-210ENST00000566612 ASB16-AS1Q495Z4 193 aa6.58□□□□□ -1.36
CDH1-210ENST00000566612 KTN1-AS1Q86SY8 53 aa6.57□□□□□ -1.36
CDH1-210ENST00000566612 LCA10Q71F78 164 aa6.55□□□□□ -1.36
CDH1-210ENST00000566612 Q6ZSA8 131 aa6.53□□□□□ -1.36
CDH1-210ENST00000566612 HUWE1Q7Z6Z7 4374 aaKnown RBP6.52□□□□□ -1.37
CDH1-210ENST00000566612 KRTAP1-4P0C5Y4 121 aa6.51□□□□□ -1.37
CDH1-210ENST00000566612 ANK2Q01484 3957 aa6.5□□□□□ -1.37
CDH1-210ENST00000566612 Q5VSD8 79 aa6.49□□□□□ -1.37
CDH1-210ENST00000566612 A0A0D9SG42 100 aa6.48□□□□□ -1.37
CDH1-210ENST00000566612 A0A1B0GU33 70 aa6.47□□□□□ -1.37
CDH1-210ENST00000566612 PRAC1Q96KF2 57 aa6.46□□□□□ -1.38
CDH1-210ENST00000566612 J3QL48 77 aa6.44□□□□□ -1.38
CDH1-210ENST00000566612 DNAH10Q8IVF4 4471 aa6.43□□□□□ -1.38
CDH1-210ENST00000566612 RBM12B-AS1Q9P1G2 102 aa6.4□□□□□ -1.38
CDH1-210ENST00000566612 RPS29P62273 56 aaKnown RBP6.36□□□□□ -1.39
CDH1-210ENST00000566612 KRTAP16-1A8MUX0 517 aa6.34□□□□□ -1.39
CDH1-210ENST00000566612 KRTAP21-3Q3LHN1 58 aa6.34□□□□□ -1.39
CDH1-210ENST00000566612 LYSTQ99698 3801 aa6.34□□□□□ -1.39
CDH1-210ENST00000566612 LINC01554Q52M75 96 aa6.34□□□□□ -1.39
CDH1-210ENST00000566612 COX6B2Q6YFQ2 88 aa6.34□□□□□ -1.4
CDH1-210ENST00000566612 SPINT4Q6UDR6 99 aa6.33□□□□□ -1.4
CDH1-210ENST00000566612 SPATA8Q6RVD6 105 aa6.32□□□□□ -1.4
CDH1-210ENST00000566612 DNAH9Q9NYC9 4486 aa6.32□□□□□ -1.4
CDH1-210ENST00000566612 PLECQ15149 4684 aaKnown RBP6.3□□□□□ -1.4
CDH1-210ENST00000566612 KRTAP13-3Q3SY46 172 aa6.3□□□□□ -1.4
CDH1-210ENST00000566612 S4R3F8 94 aa6.3□□□□□ -1.4
CDH1-210ENST00000566612 A6NN06 94 aa6.3□□□□□ -1.4
CDH1-210ENST00000566612 CRIPTQ9P021 101 aa6.29□□□□□ -1.4
CDH1-210ENST00000566612 A8MUU9 505 aa6.28□□□□□ -1.4
CDH1-210ENST00000566612 CSAG1Q6PB30 78 aa6.27□□□□□ -1.4
CDH1-210ENST00000566612 H1FX-AS1Q4G0G2 97 aa6.27□□□□□ -1.41
CDH1-210ENST00000566612 C20orf166-AS1Q96NR2 134 aa6.26□□□□□ -1.41
CDH1-210ENST00000566612 ADM2Q7Z4H4 148 aa6.26□□□□□ -1.41
CDH1-210ENST00000566612 DNAH1Q9P2D7 4330 aa6.17□□□□□ -1.42
CDH1-210ENST00000566612 RPL37P61927 97 aaKnown RBP6.17□□□□□ -1.42
CDH1-210ENST00000566612 DNHD1Q96M86 4753 aa6.15□□□□□ -1.42
CDH1-210ENST00000566612 A0A1B0GVY2 172 aa6.15□□□□□ -1.42
CDH1-210ENST00000566612 STARD9Q9P2P6 4700 aa6.15□□□□□ -1.43
CDH1-210ENST00000566612 DNAH11Q96DT5 4516 aa6.13□□□□□ -1.43
CDH1-210ENST00000566612 PRKDCP78527 4128 aaKnown RBP6.12□□□□□ -1.43
CDH1-210ENST00000566612 DNAH7Q8WXX0 4024 aa6.11□□□□□ -1.43
CDH1-210ENST00000566612 XP32Q5T750 250 aa6.11□□□□□ -1.43
CDH1-210ENST00000566612 CMYA5Q8N3K9 4069 aa6.1□□□□□ -1.43
CDH1-210ENST00000566612 KMT2AQ03164 3969 aa6.1□□□□□ -1.43
CDH1-210ENST00000566612 SEC61BP60468 96 aaKnown RBP6.09□□□□□ -1.43
CDH1-210ENST00000566612 R4GN34 69 aa6.08□□□□□ -1.44
CDH1-210ENST00000566612 VPS13DQ5THJ4 4388 aa6.05□□□□□ -1.44
CDH1-210ENST00000566612 H0YAA0 97 aa6.05□□□□□ -1.44
CDH1-210ENST00000566612 ROMO1P60602 79 aa6.05□□□□□ -1.44
CDH1-210ENST00000566612 FRAS1Q86XX4 4008 aa6.04□□□□□ -1.44
CDH1-210ENST00000566612 M0QZ58 72 aa6.04□□□□□ -1.44
CDH1-210ENST00000566612 DNAH3Q8TD57 4116 aa6.04□□□□□ -1.44
CDH1-210ENST00000566612 KRTAP10-8P60410 259 aa6.03□□□□□ -1.44
CDH1-210ENST00000566612 CAMK2N1Q7Z7J9 78 aa6□□□□□ -1.45
CDH1-210ENST00000566612 DNAH5Q8TE73 4624 aa6□□□□□ -1.45
CDH1-210ENST00000566612 KRTAP3-1Q9BYR8 98 aa5.99□□□□□ -1.45
CDH1-210ENST00000566612 DNAH17Q9UFH2 4485 aa5.95□□□□□ -1.46
CDH1-210ENST00000566612 DNAH8Q96JB1 4490 aa5.95□□□□□ -1.46
CDH1-210ENST00000566612 LRP1BQ9NZR2 4599 aa5.95□□□□□ -1.46
CDH1-210ENST00000566612 KRTAP25-1Q3LHN0 102 aa5.94□□□□□ -1.46
CDH1-210ENST00000566612 M0R2T5 61 aa5.94□□□□□ -1.46
CDH1-210ENST00000566612 DNAH2Q9P225 4427 aa5.92□□□□□ -1.46
CDH1-210ENST00000566612 P0C880 135 aa5.92□□□□□ -1.46
CDH1-210ENST00000566612 FAT1Q14517 4588 aa5.9□□□□□ -1.46
CDH1-210ENST00000566612 KRTAP10-4P60372 401 aaPredicted RBP5.9□□□□□ -1.47
CDH1-210ENST00000566612 DNAH6Q9C0G6 4158 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms