RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 REV3LO60673 3130 aa9.26□□□□□ -0.93
SYNE3-204ENST00000555759 ITPR2Q14571 2701 aa9.23□□□□□ -0.93
SYNE3-204ENST00000555759 KMT2BQ9UMN6 2715 aaPredicted RBP9.23□□□□□ -0.93
SYNE3-204ENST00000555759 TACC2O95359 2948 aa9.19□□□□□ -0.94
SYNE3-204ENST00000555759 CELSR3Q9NYQ7 3312 aa9.17□□□□□ -0.94
SYNE3-204ENST00000555759 SZT2Q5T011 3432 aa9.16□□□□□ -0.94
SYNE3-204ENST00000555759 FLNCQ14315 2725 aa9.15□□□□□ -0.95
SYNE3-204ENST00000555759 ATMQ13315 3056 aa9.14□□□□□ -0.95
SYNE3-204ENST00000555759 ASH1LQ9NR48 2969 aaKnown RBP9.13□□□□□ -0.95
SYNE3-204ENST00000555759 COL12A1Q99715 3063 aa9.11□□□□□ -0.95
SYNE3-204ENST00000555759 FRYLO94915 3013 aa9.11□□□□□ -0.95
SYNE3-204ENST00000555759 UTP20O75691 2785 aaKnown RBP9.1□□□□□ -0.95
SYNE3-204ENST00000555759 KRTAP10-8P60410 259 aa9.09□□□□□ -0.95
SYNE3-204ENST00000555759 XP32Q5T750 250 aa9.09□□□□□ -0.95
SYNE3-204ENST00000555759 ADGRG4Q8IZF6 3080 aa9.08□□□□□ -0.96
SYNE3-204ENST00000555759 LRBAP50851 2863 aa9.08□□□□□ -0.96
SYNE3-204ENST00000555759 NIPBLQ6KC79 2804 aaeCLIP9.06□□□□□ -0.96
SYNE3-204ENST00000555759 HIVEP1P15822 2718 aa9.03□□□□□ -0.96
SYNE3-204ENST00000555759 DMXL2Q8TDJ6 3036 aa9.02□□□□□ -0.96
SYNE3-204ENST00000555759 LAMA1P25391 3075 aa9.02□□□□□ -0.97
SYNE3-204ENST00000555759 VCANP13611 3396 aa9.01□□□□□ -0.97
SYNE3-204ENST00000555759 TENM4Q6N022 2769 aa9□□□□□ -0.97
SYNE3-204ENST00000555759 ZZEF1O43149 2961 aa9□□□□□ -0.97
SYNE3-204ENST00000555759 CRYBG3Q68DQ2 2970 aa8.99□□□□□ -0.97
SYNE3-204ENST00000555759 KRTAP21-3Q3LHN1 58 aa8.98□□□□□ -0.97
SYNE3-204ENST00000555759 COL6A3P12111 3177 aa8.97□□□□□ -0.97
SYNE3-204ENST00000555759 BOD1L1Q8NFC6 3051 aa8.96□□□□□ -0.97
SYNE3-204ENST00000555759 DNAH14Q0VDD8 3507 aa8.87□□□□□ -0.99
SYNE3-204ENST00000555759 TPRXLQ17RH7 258 aa8.87□□□□□ -0.99
SYNE3-204ENST00000555759 KRTAP12-2P59991 146 aa8.84□□□□□ -0.99
SYNE3-204ENST00000555759 CELSR2Q9HCU4 2923 aa8.84□□□□□ -0.99
SYNE3-204ENST00000555759 EYSQ5T1H1 3165 aa8.84□□□□□ -0.99
SYNE3-204ENST00000555759 CFAP47Q6ZTR5 3102 aa8.79□□□□□ -1
SYNE3-204ENST00000555759 TNRC18O15417 2968 aaPredicted RBP8.77□□□□□ -1
SYNE3-204ENST00000555759 TGP01266 2768 aa8.76□□□□□ -1.01
SYNE3-204ENST00000555759 HRNRQ86YZ3 2850 aaPredicted RBP8.74□□□□□ -1.01
SYNE3-204ENST00000555759 KRTAP12-1P59990 96 aa8.74□□□□□ -1.01
SYNE3-204ENST00000555759 DCHS2Q6V1P9 2916 aa8.72□□□□□ -1.01
SYNE3-204ENST00000555759 KRTAP13-4Q3LI77 160 aa8.72□□□□□ -1.01
SYNE3-204ENST00000555759 ZANQ9Y493 2812 aa8.71□□□□□ -1.02
SYNE3-204ENST00000555759 KRTAP3-1Q9BYR8 98 aa8.65□□□□□ -1.02
SYNE3-204ENST00000555759 DMXL1Q9Y485 3027 aa8.65□□□□□ -1.03
SYNE3-204ENST00000555759 SPTBN5Q9NRC6 3674 aaKnown RBP8.64□□□□□ -1.03
SYNE3-204ENST00000555759 USP34Q70CQ2 3546 aa8.62□□□□□ -1.03
SYNE3-204ENST00000555759 SPEGQ15772 3267 aa8.62□□□□□ -1.03
SYNE3-204ENST00000555759 A0A1B0GVY2 172 aa8.6□□□□□ -1.03
SYNE3-204ENST00000555759 FBN2P35556 2912 aa8.55□□□□□ -1.04
SYNE3-204ENST00000555759 KRTAP15-1Q3LI76 137 aa8.53□□□□□ -1.04
SYNE3-204ENST00000555759 KRTAP10-6P60371 365 aaPredicted RBP8.51□□□□□ -1.05
SYNE3-204ENST00000555759 PRO2289Q9P1D8 64 aa8.51□□□□□ -1.05
SYNE3-204ENST00000555759 NF1P21359 2839 aa8.5□□□□□ -1.05
SYNE3-204ENST00000555759 KRTAP10-10P60014 251 aa8.43□□□□□ -1.06
SYNE3-204ENST00000555759 TENM3Q9P273 2699 aa8.4□□□□□ -1.06
SYNE3-204ENST00000555759 TENM1Q9UKZ4 2725 aa8.39□□□□□ -1.07
SYNE3-204ENST00000555759 LOC400499M0QZD8 3231 aa8.37□□□□□ -1.07
SYNE3-204ENST00000555759 TENM2Q9NT68 2774 aa8.37□□□□□ -1.07
SYNE3-204ENST00000555759 CELSR1Q9NYQ6 3014 aa8.34□□□□□ -1.07
SYNE3-204ENST00000555759 INE1O15225 51 aa8.33□□□□□ -1.08
SYNE3-204ENST00000555759 MXRA5Q9NR99 2828 aa8.33□□□□□ -1.08
SYNE3-204ENST00000555759 MYO15AQ9UKN7 3530 aa8.29□□□□□ -1.08
SYNE3-204ENST00000555759 PKD1L1Q8TDX9 2849 aa8.24□□□□□ -1.09
SYNE3-204ENST00000555759 KRTAP3-2Q9BYR7 98 aa8.19□□□□□ -1.1
SYNE3-204ENST00000555759 PDZD2O15018 2839 aa8.19□□□□□ -1.1
SYNE3-204ENST00000555759 DCHS1Q96JQ0 3298 aa8.18□□□□□ -1.1
SYNE3-204ENST00000555759 RELNP78509 3460 aa8.14□□□□□ -1.11
SYNE3-204ENST00000555759 KRTAP3-3Q9BYR6 98 aa8.1□□□□□ -1.11
SYNE3-204ENST00000555759 VWFP04275 2813 aa8.06□□□□□ -1.12
SYNE3-204ENST00000555759 WDFY3Q8IZQ1 3526 aa8.04□□□□□ -1.12
SYNE3-204ENST00000555759 KRTAP23-1A1A580 65 aa7.95□□□□□ -1.14
SYNE3-204ENST00000555759 NBPF19A0A087WUL8 3843 aa7.94□□□□□ -1.14
SYNE3-204ENST00000555759 LAMA5O15230 3695 aa7.9□□□□□ -1.14
SYNE3-204ENST00000555759 ASPMQ8IZT6 3477 aa7.9□□□□□ -1.14
SYNE3-204ENST00000555759 ZFHX3Q15911 3703 aa7.85□□□□□ -1.15
SYNE3-204ENST00000555759 FBN1P35555 2871 aaKnown RBP7.84□□□□□ -1.15
SYNE3-204ENST00000555759 OTOGQ6ZRI0 2925 aa7.81□□□□□ -1.16
SYNE3-204ENST00000555759 FBN3Q75N90 2809 aa7.8□□□□□ -1.16
SYNE3-204ENST00000555759 MEGF8Q7Z7M0 2845 aa7.77□□□□□ -1.16
SYNE3-204ENST00000555759 CSMD1Q96PZ7 3565 aa7.76□□□□□ -1.17
SYNE3-204ENST00000555759 SRRM2Q9UQ35 2752 aaKnown RBP7.76□□□□□ -1.17
SYNE3-204ENST00000555759 ZFHX4Q86UP3 3567 aa7.75□□□□□ -1.17
SYNE3-204ENST00000555759 KRTAP10-12P60413 245 aa7.66□□□□□ -1.18
SYNE3-204ENST00000555759 MUC3AQ02505 3323 aa7.64□□□□□ -1.19
SYNE3-204ENST00000555759 DMDP11532 3685 aa7.64□□□□□ -1.19
SYNE3-204ENST00000555759 MT1HL1P0DM35 61 aa7.63□□□□□ -1.19
SYNE3-204ENST00000555759 KRTAP12-3P60328 96 aa7.58□□□□□ -1.2
SYNE3-204ENST00000555759 KRTAP10-4P60372 401 aaPredicted RBP7.56□□□□□ -1.2
SYNE3-204ENST00000555759 ANK3Q12955 4377 aaKnown RBP7.55□□□□□ -1.2
SYNE3-204ENST00000555759 SMG1Q96Q15 3661 aaKnown RBP7.52□□□□□ -1.2
SYNE3-204ENST00000555759 CSMD2Q7Z408 3487 aa7.51□□□□□ -1.21
SYNE3-204ENST00000555759 LCE3AQ5TA76 89 aa7.49□□□□□ -1.21
SYNE3-204ENST00000555759 COL7A1Q02388 2944 aa7.4□□□□□ -1.22
SYNE3-204ENST00000555759 LORP23490 312 aaPredicted RBP7.4□□□□□ -1.23
SYNE3-204ENST00000555759 SVEP1Q4LDE5 3571 aa7.34□□□□□ -1.23
SYNE3-204ENST00000555759 TRRAPQ9Y4A5 3859 aa7.33□□□□□ -1.24
SYNE3-204ENST00000555759 KRTAP4-5Q9BYR2 181 aa7.31□□□□□ -1.24
SYNE3-204ENST00000555759 CUBNO60494 3623 aa7.28□□□□□ -1.24
SYNE3-204ENST00000555759 HUWE1Q7Z6Z7 4374 aaKnown RBP7.26□□□□□ -1.25
SYNE3-204ENST00000555759 SPENQ96T58 3664 aaKnown RBP7.23□□□□□ -1.25
SYNE3-204ENST00000555759 CRCT1Q9UGL9 99 aa7.14□□□□□ -1.27
SYNE3-204ENST00000555759 ALMS1Q8TCU4 4167 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms