RNA–Protein interactions for RNA: ENST00000544484.5

CHD4-211, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2 BASIC

Gene CHD4, Length 6,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-211ENST00000544484 NIPBLQ6KC79 2804 aaeCLIP7.42□□□□□ -1.227e-7■■□□□ 12
CHD4-211ENST00000544484 KRTAP7-1Q8IUC3 87 aa7.42□□□□□ -1.22
CHD4-211ENST00000544484 DCHS2Q6V1P9 2916 aa7.41□□□□□ -1.22
CHD4-211ENST00000544484 SPTBN5Q9NRC6 3674 aaKnown RBP7.39□□□□□ -1.23
CHD4-211ENST00000544484 DMXL1Q9Y485 3027 aa7.39□□□□□ -1.23
CHD4-211ENST00000544484 M0QZ58 72 aa7.37□□□□□ -1.23
CHD4-211ENST00000544484 USP34Q70CQ2 3546 aa7.37□□□□□ -1.23
CHD4-211ENST00000544484 RPL37P61927 97 aaKnown RBP7.35□□□□□ -1.23
CHD4-211ENST00000544484 SPATA8Q6RVD6 105 aa7.34□□□□□ -1.23
CHD4-211ENST00000544484 H1FX-AS1Q4G0G2 97 aa7.34□□□□□ -1.24
CHD4-211ENST00000544484 TNRC18O15417 2968 aaPredicted RBP7.33□□□□□ -1.24
CHD4-211ENST00000544484 ADM2Q7Z4H4 148 aa7.31□□□□□ -1.24
CHD4-211ENST00000544484 LOC400499M0QZD8 3231 aa7.3□□□□□ -1.24
CHD4-211ENST00000544484 KRTAP13-2Q52LG2 175 aa7.3□□□□□ -1.24
CHD4-211ENST00000544484 ROMO1P60602 79 aa7.26□□□□□ -1.25
CHD4-211ENST00000544484 FBN2P35556 2912 aa7.26□□□□□ -1.25
CHD4-211ENST00000544484 MYO15AQ9UKN7 3530 aa7.25□□□□□ -1.25
CHD4-211ENST00000544484 KRTAP13-1Q8IUC0 172 aa7.25□□□□□ -1.25
CHD4-211ENST00000544484 ASB16-AS1Q495Z4 193 aa7.24□□□□□ -1.25
CHD4-211ENST00000544484 NF1P21359 2839 aa7.23□□□□□ -1.25
CHD4-211ENST00000544484 HRNRQ86YZ3 2850 aaPredicted RBP7.2□□□□□ -1.26
CHD4-211ENST00000544484 RPS29P62273 56 aaKnown RBP7.18□□□□□ -1.26
CHD4-211ENST00000544484 PLAC4Q8WY50 150 aa7.15□□□□□ -1.26
CHD4-211ENST00000544484 A8MU10 97 aa7.15□□□□□ -1.27
CHD4-211ENST00000544484 TENM3Q9P273 2699 aa7.14□□□□□ -1.27
CHD4-211ENST00000544484 TENM1Q9UKZ4 2725 aa7.11□□□□□ -1.27
CHD4-211ENST00000544484 A8MUU9 505 aa7.09□□□□□ -1.27
CHD4-211ENST00000544484 WDFY3Q8IZQ1 3526 aa7.05□□□□□ -1.28
CHD4-211ENST00000544484 H3BS24 57 aa7.04□□□□□ -1.28
CHD4-211ENST00000544484 C20orf166-AS1Q96NR2 134 aa7.04□□□□□ -1.28
CHD4-211ENST00000544484 DCHS1Q96JQ0 3298 aa7.03□□□□□ -1.28
CHD4-211ENST00000544484 RELNP78509 3460 aa7.03□□□□□ -1.28
CHD4-211ENST00000544484 KRTAP21-3Q3LHN1 58 aa7.02□□□□□ -1.29
CHD4-211ENST00000544484 CELSR1Q9NYQ6 3014 aa7.02□□□□□ -1.29
CHD4-211ENST00000544484 A0A0A0MQY5 61 aa7.01□□□□□ -1.29
CHD4-211ENST00000544484 PKD1L1Q8TDX9 2849 aa6.99□□□□□ -1.29
CHD4-211ENST00000544484 TENM2Q9NT68 2774 aa6.98□□□□□ -1.29
CHD4-211ENST00000544484 MXRA5Q9NR99 2828 aa6.96□□□□□ -1.3
CHD4-211ENST00000544484 A6NN06 94 aa6.95□□□□□ -1.3
CHD4-211ENST00000544484 KRTAP1-4P0C5Y4 121 aa6.94□□□□□ -1.3
CHD4-211ENST00000544484 KRTAP25-1Q3LHN0 102 aa6.91□□□□□ -1.3
CHD4-211ENST00000544484 ASPMQ8IZT6 3477 aa6.9□□□□□ -1.31
CHD4-211ENST00000544484 VWFP04275 2813 aa6.87□□□□□ -1.31
CHD4-211ENST00000544484 XP32Q5T750 250 aa6.86□□□□□ -1.31
CHD4-211ENST00000544484 LAMA5O15230 3695 aa6.84□□□□□ -1.31
CHD4-211ENST00000544484 ZFHX4Q86UP3 3567 aa6.83□□□□□ -1.32
CHD4-211ENST00000544484 A0A1B0GVY2 172 aa6.79□□□□□ -1.32
CHD4-211ENST00000544484 TGP01266 2768 aa6.77□□□□□ -1.33
CHD4-211ENST00000544484 TNP1P09430 55 aa6.76□□□□□ -1.33
CHD4-211ENST00000544484 PDZD2O15018 2839 aa6.74□□□□□ -1.33
CHD4-211ENST00000544484 FBN1P35555 2871 aaKnown RBP6.73□□□□□ -1.33
CHD4-211ENST00000544484 NBPF19A0A087WUL8 3843 aa6.72□□□□□ -1.33
CHD4-211ENST00000544484 KRTAP16-1A8MUX0 517 aa6.7□□□□□ -1.34
CHD4-211ENST00000544484 CSMD1Q96PZ7 3565 aa6.7□□□□□ -1.34
CHD4-211ENST00000544484 NDUFAF8A1L188 74 aa6.69□□□□□ -1.34
CHD4-211ENST00000544484 KRTAP10-8P60410 259 aa6.68□□□□□ -1.34
CHD4-211ENST00000544484 C10orf95Q9H7T3 257 aa6.67□□□□□ -1.34
CHD4-211ENST00000544484 TPRXLQ17RH7 258 aa6.67□□□□□ -1.34
CHD4-211ENST00000544484 H0YAA0 97 aa6.64□□□□□ -1.35
CHD4-211ENST00000544484 DMDP11532 3685 aa6.64□□□□□ -1.35
CHD4-211ENST00000544484 SRRM2Q9UQ35 2752 aaKnown RBP6.63□□□□□ -1.35
CHD4-211ENST00000544484 MUC3AQ02505 3323 aa6.62□□□□□ -1.35
CHD4-211ENST00000544484 KRTAP13-3Q3SY46 172 aa6.62□□□□□ -1.35
CHD4-211ENST00000544484 ZFHX3Q15911 3703 aa6.61□□□□□ -1.35
CHD4-211ENST00000544484 P0C880 135 aa6.58□□□□□ -1.36
CHD4-211ENST00000544484 KRTAP10-10P60014 251 aa6.57□□□□□ -1.36
CHD4-211ENST00000544484 SMG1Q96Q15 3661 aaKnown RBP6.55□□□□□ -1.36
CHD4-211ENST00000544484 OTOGQ6ZRI0 2925 aa6.53□□□□□ -1.36
CHD4-211ENST00000544484 CUBNO60494 3623 aa6.53□□□□□ -1.36
CHD4-211ENST00000544484 SVEP1Q4LDE5 3571 aa6.49□□□□□ -1.37
CHD4-211ENST00000544484 PP632Q6XCG6 107 aa6.48□□□□□ -1.37
CHD4-211ENST00000544484 CSMD2Q7Z408 3487 aa6.44□□□□□ -1.38
CHD4-211ENST00000544484 FBN3Q75N90 2809 aa6.42□□□□□ -1.38
CHD4-211ENST00000544484 PRO2289Q9P1D8 64 aa6.33□□□□□ -1.4
CHD4-211ENST00000544484 COL7A1Q02388 2944 aa6.32□□□□□ -1.4
CHD4-211ENST00000544484 SPENQ96T58 3664 aaKnown RBP6.32□□□□□ -1.4
CHD4-211ENST00000544484 MEGF8Q7Z7M0 2845 aa6.29□□□□□ -1.4
CHD4-211ENST00000544484 KRTAP12-2P59991 146 aa6.28□□□□□ -1.4
CHD4-211ENST00000544484 TRRAPQ9Y4A5 3859 aa6.25□□□□□ -1.41
CHD4-211ENST00000544484 ANK3Q12955 4377 aaKnown RBP6.24□□□□□ -1.41
CHD4-211ENST00000544484 KRTAP3-1Q9BYR8 98 aa6.23□□□□□ -1.41
CHD4-211ENST00000544484 KRTAP12-1P59990 96 aa6.15□□□□□ -1.42
CHD4-211ENST00000544484 KRTAP13-4Q3LI77 160 aa6.09□□□□□ -1.44
CHD4-211ENST00000544484 BSNQ9UPA5 3926 aa6.03□□□□□ -1.44
CHD4-211ENST00000544484 KRTAP10-6P60371 365 aaPredicted RBP6.01□□□□□ -1.45
CHD4-211ENST00000544484 MT1HL1P0DM35 61 aa6.01□□□□□ -1.45
CHD4-211ENST00000544484 VPS13CQ709C8 3753 aa5.95□□□□□ -1.46
CHD4-211ENST00000544484 KRTAP4-5Q9BYR2 181 aa5.93□□□□□ -1.46
CHD4-211ENST00000544484 HUWE1Q7Z6Z7 4374 aaKnown RBP5.88□□□□□ -1.47
CHD4-211ENST00000544484 KRTAP15-1Q3LI76 137 aa5.86□□□□□ -1.47
CHD4-211ENST00000544484 CSMD3Q7Z407 3707 aa5.85□□□□□ -1.47
CHD4-211ENST00000544484 KRTAP10-4P60372 401 aaPredicted RBP5.85□□□□□ -1.47
CHD4-211ENST00000544484 KRTAP3-3Q9BYR6 98 aa5.82□□□□□ -1.48
CHD4-211ENST00000544484 KRTAP3-2Q9BYR7 98 aa5.8□□□□□ -1.48
CHD4-211ENST00000544484 ZNF469Q96JG9 3925 aaPredicted RBP5.67□□□□□ -1.5
CHD4-211ENST00000544484 KRTAP10-12P60413 245 aa5.64□□□□□ -1.51
CHD4-211ENST00000544484 CRCT1Q9UGL9 99 aa5.63□□□□□ -1.51
CHD4-211ENST00000544484 DNAH9Q9NYC9 4486 aa5.58□□□□□ -1.52
CHD4-211ENST00000544484 LORP23490 312 aaPredicted RBP5.58□□□□□ -1.52
CHD4-211ENST00000544484 DNAH5Q8TE73 4624 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 597.6 ms